These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1041 fasta sequence [GGCATCGGCGCCATGCGCATCTACTCCGCCGACCGCGAGGCCCTCGACGCCCTGCGCGGCTCGGGCATCGACCTCGCCCTCGACGTCGGCGAACGGAACGACGTCGGCCAGCTCGCGGCCAACGCGGACTCCTGGGTCCAGGACAACGTGAAGGCTTACTACCCGGACGTCAAGATCAAGTACATCGTCGTCGGCAACGAGCTCACCGGCACCGGCGACGCGGCGAGCATCCTCCCGGCCATGCAGAACGTCCAGGCCGCCCTCGCGTCCGCAGGCCTCGCGGACAGCATCAAGGTGACCACCGCCATCAAGATGGACACGCTCGCCGCCTCATCGCCGCCGTCCGCCGGCGTGTTCACCAACCCATCCGTCATGGAGCCCATCGTGAGGTTCCTCACCGGCAACGGCGCGCCGCTCCTGGCCAACGTGTACCCCTACTTCGCGTACAGGGACAGCCAGGACATCGACCTCAGCTACGCGCTCTTCCAGCCGAGCTCGACCACGGTGAGCGACCCCAACGGCGGCGGGCTGAGCTACACGAACCTCTTCGACGCCATGGTCGACGCCGTCCGCGCCGCGGTGGAGAAGGTGAGCGGCGGCGGAAGCAGCGTCGTCGACGTCGTGGTGTCGGAGAGCGGGTGGCCGTCGGACGGCGGGAAGGGGGCCACCGTGGAGAACGCGCGGGCGTACAACCAGAATCTGATCGACCACGTCGCCCAAGGCACGCCGAAGAAGCCCGGGCAGATGGAGGTGTACGTGTTCGCCTTGTTCAACGAGAACCGGAAGGAAGGCGACGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCAAGACAAGACACCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTACAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATGTGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGTGCACATATGTACTTTTAAACAAGCTCATGTTTCA] [+] EMBL AK058891 [GGCATCGGCGCCATGCGCATCTACTCCGCCGACCGCGAGGCCCTCGACGCCCTGCGCGGCTCGGGCATCGACCTCGCCCTCGACGTCGGCGAACGGAACGACGTCGGCCAGCTCGCGGCCAACGCGGACTCCTGGGTCCAGGACAACGTGAAGGCTTACTACCCGGACGTCAAGATCAAGTACATCGTCGTCGGCAACGAGCTCACCGGCACCGGCGACGCGGCGAGCATCCTCCCGGCCATGCAGAACGTCCAGGCCGCCCTCGCGTCCGCAGGCCTCGCGGACAGCATCAAGGTGACCACCGCCATCAAGATGGACACGCTCGCCGCCTCATCGCCGCCGTCCGCCGGCGTGTTCACCAACCCATCCGTCATGGAGCCCATCGTGAGGTTCCTCACCGGCAACGGCGCGCCGCTCCTGGCCAACGTGTACCCCTACTTCGCGTACAGGGACAGCCAGGACATCGACCTCAGCTACGCGCTCTTCCAGCCGAGCTCGACCACGGTGAGCGACCCCAACGGCGGCGGGCTGAGCTACACGAACCTCTTCGACGCCATGGTCGACGCCGTCCGCGCCGCGGTGGAGAAGGTGAGCGGCGGCGGAAGCAGCGTCGTCGACGTCGTGGTGTCGGAGAGCGGGTGGCCGTCGGACGGCGGGAAGGGGGCCACCGTGGAGAACGCGCGGGCGTACAACCAGAATCTGATCGACCACGTCGCCCAAGGCACGCCGAAGAAGCCCGGGCAGATGGAGGTGTACGTGTTCGCCTTGTTCAACGAGAACCGGAAGGAAGGCGACGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCAAGACAAGACACCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTACAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATGTGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGTGCACATATGTACTTTTAAACAAGCTCATGTTTCA] consensusID : consensus_503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [GCCATGAGCCGGCGTAATTGGGCCCCGATAGGGGGAATGGGGTAGGGGGCCCCCCCTTGAGGTGGCGGGAATCGGTTAGCGTATTAGCGGGCGAGACAAGGGGGAGAACGCGCGGGCGTCCAACCAGAATCTGATCGACCACGTCGCCCAAGGCACTCCCAAGAAGCCCGGGCAGATGGAGGTGTACGCGTTCGCCTTGTTCAACGAGAACCGGAAGGAAGGCGCCGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCAGACAAGACACCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTACAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATGTGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGCGCACATATGTACTTTTATCCAAGCTCATGTTTCAATTGTAACATTTGGTTAACGAATATTTTGGTTGGATTTGGAAAGGTAGGAATGCCCGGTAACTTTTGGAACAGACTAATTTGCACATGGTCGATCTATATAATATTTGTATGTTACATCTAGATAACCCATAAACAATCCCAATAGGTTGTTGTATCTAGCTGTCTCAAATAAATTCGTGTAATGAAAAAAAAAAAA] [-] EMBL CA759684 [GCCATGAGCCGGCGTAATTGGGCCCCGATAGGGGGAATGGGGTAGGGGGCCCCCCCTTGAGGTGGCGGGAATCGGTTAGCGTATTAGCGGGCGAGACAAGGGGGAGAACGCGCGGGCGTCCAACCAGAATCTGATCGACCACGTCGCCCAAGGCACTCCCAAGAAGCCCGGGCAGATGGAGGTGTACGCGTTCGCCTTGTTCAACGAGAACCGGAAGGAAGGCGCCGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCAGACAAGACACCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTACAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATGTGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGCGCACATATGTACTTTTATCCAAGCTCATGTTTCAATTGTAACATTTGGTTAACGAATATTTTGGTTGGATTTGGAAAGGTAGGAATGCCCGGTAACTTTTGGAACAGACTAATTTGCACATGGTCGATCTATATAATATTTGTATGTTACATCTAGATAACCCATAAACAATCCCAATAGGTTGTTGTATCTAGCTGTCTCAAATAAATTCGTGTAATGAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_503#0 GGCATCGGCGCCATGCGCATCTACTCCGCCGACCGCGAGGCCCTCGACGCCCTGCGCGGC 60 consensus_503#1 ------------------------------------------------------------ consensus_503#0 TCGGGCATCGACCTCGCCCTCGACGTCGGCGAACGGAACGACGTCGGCCAGCTCGCGGCC 120 consensus_503#1 ------------------------------------------------------------ consensus_503#0 AACGCGGACTCCTGGGTCCAGGACAACGTGAAGGCTTACTACCCGGACGTCAAGATCAAG 180 consensus_503#1 ------------------------------------------------------------ consensus_503#0 TACATCGTCGTCGGCAACGAGCTCACCGGCACCGGCGACGCGGCGAGCATCCTCCCGGCC 240 consensus_503#1 ------------------------------------------------------------ consensus_503#0 ATGCAGAACGTCCAGGCCGCCCTCGCGTCCGCAGGCCTCGCGGACAGCATCAAGGTGACC 300 consensus_503#1 ------------------------------------------------------------ consensus_503#0 ACCGCCATCAAGATGGACACGCTCGCCGCCTCATCGCCGCCGTCCGCCGGCGTGTTCACC 360 consensus_503#1 ------------------------------------------------------------ consensus_503#0 AACCCATCCGTCATGGAGCCCATCGTGAGGTTCCTCACCGGCAACGGCGCGCCGCTCCTG 420 consensus_503#1 ------------------------------------------------------------ consensus_503#0 GCCAACGTGTACCCCTACTTCGCGTACAGGGACAGCCAGGACATCGACCTCAGCTACGCG 480 consensus_503#1 ------------------------------------------------------------ consensus_503#0 CTCTTCCAGCCGAGCTCGACCACGGTGAGCGACCCCAACGGCGGCGGGCTGAGCTACACG 540 consensus_503#1 ------------------------------------------------------------ consensus_503#0 AACCTCTTCGACGCCATG-GTCGACGCCGTCCGCGCCGCGGTGGAGAAGGTGAGCGGCGG 599 consensus_503#1 ------------GCCATGAGCCGGCGTAATTGG-GCCCCGATAGGGGGAATGGG------ 41 ****** * ** ** * * *** ** * * * ** * consensus_503#0 CGGAAGCAGCGTCGTCGACGTCGTGGTGTCGGAGAGCGGGTGGC-CGTCGGACGGCGGGA 658 consensus_503#1 -GTAGGGGGCCCCCCC----TTGAGGTGGCGGGAATCGGTTAGCGTATTAGCGGGCGAGA 96 * * * ** * * * * **** *** * *** * ** * * **** ** consensus_503#0 AGGGGGCCACCGTGGAGAACGCGCGGGCGTACAACCAGAATCTGATCGACCACGTCGCCC 718 consensus_503#1 CAAGGG-------GGAGAACGCGCGGGCGTCCAACCAGAATCTGATCGACCACGTCGCCC 149 *** ***************** ***************************** consensus_503#0 AAGGCACGCCGAAGAAGCCCGGGCAGATGGAGGTGTACGTGTTCGCCTTGTTCAACGAGA 778 consensus_503#1 AAGGCACTCCCAAGAAGCCCGGGCAGATGGAGGTGTACGCGTTCGCCTTGTTCAACGAGA 209 ******* ** **************************** ******************** consensus_503#0 ACCGGAAGGAAGGCGACGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCAAGACAAGACA 838 consensus_503#1 ACCGGAAGGAAGGCGCCGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCA-GACAAGACA 268 *************** ********************************** ********* consensus_503#0 CCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTA 898 consensus_503#1 CCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTA 328 ************************************************************ consensus_503#0 CAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATG 958 consensus_503#1 CAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATG 388 ************************************************************ consensus_503#0 TGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGTGCACATATGTA 1018 consensus_503#1 TGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGCGCACATATGTA 448 ************************************************ *********** consensus_503#0 CTTTTAAACAAGCTCATGTTTCA------------------------------------- 1041 consensus_503#1 CTTTTATCCAAGCTCATGTTTCAATTGTAACATTTGGTTAACGAATATTTTGGTTGGATT 508 ****** *************** consensus_503#0 ------------------------------------------------------------ consensus_503#1 TGGAAAGGTAGGAATGCCCGGTAACTTTTGGAACAGACTAATTTGCACATGGTCGATCTA 568 consensus_503#0 ------------------------------------------------------------ consensus_503#1 TATAATATTTGTATGTTACATCTAGATAACCCATAAACAATCCCAATAGGTTGTTGTATC 628 consensus_503#0 ---------------------------------------- consensus_503#1 TAGCTGTCTCAAATAAATTCGTGTAATGAAAAAAAAAAAA 668 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||