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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1041 fasta sequence
[GGCATCGGCGCCATGCGCATCTACTCCGCCGACCGCGAGGCCCTCGACGCCCTGCGCGGCTCGGGCATCGACCTCGCCCTCGACGTCGGCGAACGGAACGACGTCGGCCAGCTCGCGGCCAACGCGGACTCCTGGGTCCAGGACAACGTGAAGGCTTACTACCCGGACGTCAAGATCAAGTACATCGTCGTCGGCAACGAGCTCACCGGCACCGGCGACGCGGCGAGCATCCTCCCGGCCATGCAGAACGTCCAGGCCGCCCTCGCGTCCGCAGGCCTCGCGGACAGCATCAAGGTGACCACCGCCATCAAGATGGACACGCTCGCCGCCTCATCGCCGCCGTCCGCCGGCGTGTTCACCAACCCATCCGTCATGGAGCCCATCGTGAGGTTCCTCACCGGCAACGGCGCGCCGCTCCTGGCCAACGTGTACCCCTACTTCGCGTACAGGGACAGCCAGGACATCGACCTCAGCTACGCGCTCTTCCAGCCGAGCTCGACCACGGTGAGCGACCCCAACGGCGGCGGGCTGAGCTACACGAACCTCTTCGACGCCATGGTCGACGCCGTCCGCGCCGCGGTGGAGAAGGTGAGCGGCGGCGGAAGCAGCGTCGTCGACGTCGTGGTGTCGGAGAGCGGGTGGCCGTCGGACGGCGGGAAGGGGGCCACCGTGGAGAACGCGCGGGCGTACAACCAGAATCTGATCGACCACGTCGCCCAAGGCACGCCGAAGAAGCCCGGGCAGATGGAGGTGTACGTGTTCGCCTTGTTCAACGAGAACCGGAAGGAAGGCGACGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCAAGACAAGACACCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTACAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATGTGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGTGCACATATGTACTTTTAAACAAGCTCATGTTTCA]
[+] EMBL AK058891 [GGCATCGGCGCCATGCGCATCTACTCCGCCGACCGCGAGGCCCTCGACGCCCTGCGCGGCTCGGGCATCGACCTCGCCCTCGACGTCGGCGAACGGAACGACGTCGGCCAGCTCGCGGCCAACGCGGACTCCTGGGTCCAGGACAACGTGAAGGCTTACTACCCGGACGTCAAGATCAAGTACATCGTCGTCGGCAACGAGCTCACCGGCACCGGCGACGCGGCGAGCATCCTCCCGGCCATGCAGAACGTCCAGGCCGCCCTCGCGTCCGCAGGCCTCGCGGACAGCATCAAGGTGACCACCGCCATCAAGATGGACACGCTCGCCGCCTCATCGCCGCCGTCCGCCGGCGTGTTCACCAACCCATCCGTCATGGAGCCCATCGTGAGGTTCCTCACCGGCAACGGCGCGCCGCTCCTGGCCAACGTGTACCCCTACTTCGCGTACAGGGACAGCCAGGACATCGACCTCAGCTACGCGCTCTTCCAGCCGAGCTCGACCACGGTGAGCGACCCCAACGGCGGCGGGCTGAGCTACACGAACCTCTTCGACGCCATGGTCGACGCCGTCCGCGCCGCGGTGGAGAAGGTGAGCGGCGGCGGAAGCAGCGTCGTCGACGTCGTGGTGTCGGAGAGCGGGTGGCCGTCGGACGGCGGGAAGGGGGCCACCGTGGAGAACGCGCGGGCGTACAACCAGAATCTGATCGACCACGTCGCCCAAGGCACGCCGAAGAAGCCCGGGCAGATGGAGGTGTACGTGTTCGCCTTGTTCAACGAGAACCGGAAGGAAGGCGACGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCAAGACAAGACACCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTACAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATGTGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGTGCACATATGTACTTTTAAACAAGCTCATGTTTCA]
consensusID : consensus_503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[GCCATGAGCCGGCGTAATTGGGCCCCGATAGGGGGAATGGGGTAGGGGGCCCCCCCTTGAGGTGGCGGGAATCGGTTAGCGTATTAGCGGGCGAGACAAGGGGGAGAACGCGCGGGCGTCCAACCAGAATCTGATCGACCACGTCGCCCAAGGCACTCCCAAGAAGCCCGGGCAGATGGAGGTGTACGCGTTCGCCTTGTTCAACGAGAACCGGAAGGAAGGCGCCGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCAGACAAGACACCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTACAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATGTGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGCGCACATATGTACTTTTATCCAAGCTCATGTTTCAATTGTAACATTTGGTTAACGAATATTTTGGTTGGATTTGGAAAGGTAGGAATGCCCGGTAACTTTTGGAACAGACTAATTTGCACATGGTCGATCTATATAATATTTGTATGTTACATCTAGATAACCCATAAACAATCCCAATAGGTTGTTGTATCTAGCTGTCTCAAATAAATTCGTGTAATGAAAAAAAAAAAA]
[-] EMBL CA759684 [GCCATGAGCCGGCGTAATTGGGCCCCGATAGGGGGAATGGGGTAGGGGGCCCCCCCTTGAGGTGGCGGGAATCGGTTAGCGTATTAGCGGGCGAGACAAGGGGGAGAACGCGCGGGCGTCCAACCAGAATCTGATCGACCACGTCGCCCAAGGCACTCCCAAGAAGCCCGGGCAGATGGAGGTGTACGCGTTCGCCTTGTTCAACGAGAACCGGAAGGAAGGCGCCGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCAGACAAGACACCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTACAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATGTGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGCGCACATATGTACTTTTATCCAAGCTCATGTTTCAATTGTAACATTTGGTTAACGAATATTTTGGTTGGATTTGGAAAGGTAGGAATGCCCGGTAACTTTTGGAACAGACTAATTTGCACATGGTCGATCTATATAATATTTGTATGTTACATCTAGATAACCCATAAACAATCCCAATAGGTTGTTGTATCTAGCTGTCTCAAATAAATTCGTGTAATGAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_503#0 GGCATCGGCGCCATGCGCATCTACTCCGCCGACCGCGAGGCCCTCGACGCCCTGCGCGGC 60
consensus_503#1 ------------------------------------------------------------
consensus_503#0 TCGGGCATCGACCTCGCCCTCGACGTCGGCGAACGGAACGACGTCGGCCAGCTCGCGGCC 120
consensus_503#1 ------------------------------------------------------------
consensus_503#0 AACGCGGACTCCTGGGTCCAGGACAACGTGAAGGCTTACTACCCGGACGTCAAGATCAAG 180
consensus_503#1 ------------------------------------------------------------
consensus_503#0 TACATCGTCGTCGGCAACGAGCTCACCGGCACCGGCGACGCGGCGAGCATCCTCCCGGCC 240
consensus_503#1 ------------------------------------------------------------
consensus_503#0 ATGCAGAACGTCCAGGCCGCCCTCGCGTCCGCAGGCCTCGCGGACAGCATCAAGGTGACC 300
consensus_503#1 ------------------------------------------------------------
consensus_503#0 ACCGCCATCAAGATGGACACGCTCGCCGCCTCATCGCCGCCGTCCGCCGGCGTGTTCACC 360
consensus_503#1 ------------------------------------------------------------
consensus_503#0 AACCCATCCGTCATGGAGCCCATCGTGAGGTTCCTCACCGGCAACGGCGCGCCGCTCCTG 420
consensus_503#1 ------------------------------------------------------------
consensus_503#0 GCCAACGTGTACCCCTACTTCGCGTACAGGGACAGCCAGGACATCGACCTCAGCTACGCG 480
consensus_503#1 ------------------------------------------------------------
consensus_503#0 CTCTTCCAGCCGAGCTCGACCACGGTGAGCGACCCCAACGGCGGCGGGCTGAGCTACACG 540
consensus_503#1 ------------------------------------------------------------
consensus_503#0 AACCTCTTCGACGCCATG-GTCGACGCCGTCCGCGCCGCGGTGGAGAAGGTGAGCGGCGG 599
consensus_503#1 ------------GCCATGAGCCGGCGTAATTGG-GCCCCGATAGGGGGAATGGG------ 41
****** * ** ** * * *** ** * * * ** *
consensus_503#0 CGGAAGCAGCGTCGTCGACGTCGTGGTGTCGGAGAGCGGGTGGC-CGTCGGACGGCGGGA 658
consensus_503#1 -GTAGGGGGCCCCCCC----TTGAGGTGGCGGGAATCGGTTAGCGTATTAGCGGGCGAGA 96
* * * ** * * * * **** *** * *** * ** * * **** **
consensus_503#0 AGGGGGCCACCGTGGAGAACGCGCGGGCGTACAACCAGAATCTGATCGACCACGTCGCCC 718
consensus_503#1 CAAGGG-------GGAGAACGCGCGGGCGTCCAACCAGAATCTGATCGACCACGTCGCCC 149
*** ***************** *****************************
consensus_503#0 AAGGCACGCCGAAGAAGCCCGGGCAGATGGAGGTGTACGTGTTCGCCTTGTTCAACGAGA 778
consensus_503#1 AAGGCACTCCCAAGAAGCCCGGGCAGATGGAGGTGTACGCGTTCGCCTTGTTCAACGAGA 209
******* ** **************************** ********************
consensus_503#0 ACCGGAAGGAAGGCGACGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCAAGACAAGACA 838
consensus_503#1 ACCGGAAGGAAGGCGCCGCCACGGAGAAGAAGTTTGGGCTGTTCAATCCA-GACAAGACA 268
*************** ********************************** *********
consensus_503#0 CCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTA 898
consensus_503#1 CCGGTTTACCCAATCACTTTCTGAAAAATTACTCCAATACGGAATATGTACTACGTCGTA 328
************************************************************
consensus_503#0 CAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATG 958
consensus_503#1 CAGTATATATCATGTGCTTAATCTGGTGCTTACGAATCAAAATCTGTTAGAATTTGTATG 388
************************************************************
consensus_503#0 TGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGTGCACATATGTA 1018
consensus_503#1 TGCCAGATGTTGAACATGAACAGTCGTTGAACACTCACCCACCACATGCGCACATATGTA 448
************************************************ ***********
consensus_503#0 CTTTTAAACAAGCTCATGTTTCA------------------------------------- 1041
consensus_503#1 CTTTTATCCAAGCTCATGTTTCAATTGTAACATTTGGTTAACGAATATTTTGGTTGGATT 508
****** ***************
consensus_503#0 ------------------------------------------------------------
consensus_503#1 TGGAAAGGTAGGAATGCCCGGTAACTTTTGGAACAGACTAATTTGCACATGGTCGATCTA 568
consensus_503#0 ------------------------------------------------------------
consensus_503#1 TATAATATTTGTATGTTACATCTAGATAACCCATAAACAATCCCAATAGGTTGTTGTATC 628
consensus_503#0 ----------------------------------------
consensus_503#1 TAGCTGTCTCAAATAAATTCGTGTAATGAAAAAAAAAAAA 668
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||