These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 900 fasta sequence [CAGCCACGCCATTCTGTCGCCTCCTCCACTTCTTCTCCTTCGCCATGGCTGTGCAGGCGCAGTATGGGGGTGGGATGGCGGCGGGGATGTGCTTGCCAGACCATGAGGTGGAGGCGCAGATGCGGGAGCTCGGCGCGATGTTCTCGGCGGCAGGTGGTGGTTGCTACAACGGCGGCGGTGGCGGCGGAGGGTATGACTGCGCCGCCGTGGTGAGCGGCGCGGCGCAGAGCGAGCTGACGTGCAACAACGGTGGTGTTTGTGGTGGTGCGGTGGGGATGGGGGTGGGGGCGGGGAGGAAGCGGGAGAGGGAGGTGGTGGAGCAGTATGCGGCGGTGGCGTCGTCCGCGGCGCTGCTGCCGATCCCCGGGATGATGAAGGTGGCGGCGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGTCGACGAGTGGGAGGTCAGCGGCGGCGGTGGGGGATGCGCTGGTGTCGGAGCTGTGCGCGCAGAGCGCGGAGATCGACGCGGTGGTGCGGATGGAGTGCGAGCCCAAGCTGGACGCTTGCCCCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCGTCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATTAGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAAAAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATTACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTACAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTT] [+] EMBL AK108274 [CAGCCACGCCATTCTGTCGCCTCCTCCACTTCTTCTCCTTCGCCATGGCTGTGCAGGCGCAGTATGGGGGTGGGATGGCGGCGGGGATGTGCTTGCCAGACCATGAGGTGGAGGCGCAGATGCGGGAGCTCGGCGCGATGTTCTCGGCGGCAGGTGGTGGTTGCTACAACGGCGGCGGTGGCGGCGGAGGGTATGACTGCGCCGCCGTGGTGAGCGGCGCGGCGCAGAGCGAGCTGACGTGCAACAACGGTGGTGTTTGTGGTGGTGCGGTGGGGATGGGGGTGGGGGCGGGGAGGAAGCGGGAGAGGGAGGTGGTGGAGCAGTATGCGGCGGTGGCGTCGTCCGCGGCGCTGCTGCCGATCCCCGGGATGATGAAGGTGGCGGCGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGTCGACGAGTGGGAGGTCAGCGGCGGCGGTGGGGGATGCGCTGGTGTCGGAGCTGTGCGCGCAGAGCGCGGAGATCGACGCGGTGGTGCGGATGGAGTGCGAGCCCAAGCTGGACGCTTGCCCCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCGTCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATTAGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAAAAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATTACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTACAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTT] consensusID : consensus_5033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [GCTGCTCCTCCCATGCCGCCACCTCTGCCTCTGCAAGGCGTGCGAGCCCAAGCTGGACGCTTGCCCCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCGTCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATTAGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAAAAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATTACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTACAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTTTTACCAAACAAAAAA] [+] EMBL AU166783 [GCTGCTCCTCCCATGCCGCCACCTCTGCCTCTGCAAGGCGTGCGAGCCCAAGCTGGACGCTTGCCCCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCGTCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATTAGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAAAAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATTACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTACAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTTTTACCAAACAAAAAA] consensusID : consensus_5033#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [TCGTCCGCGGCGCTGCTGCCGATCCCCGGGATGATGAAGGTGGCAGGCAGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGTCGACGAGTGGGAGGTCAGCAGGCAGGCGGTGGGGGATGCGCTGGTGTCGTGAGCTGTGCGCGCAGAGCGCGGAGATCGACGCGGTGGTGCGGATGGAGTGCGAGCGGATGCGCGCCGGGCTGGAGCAGGCGCGGAAGCGGCAGTGCCAGGCGGTGGTGCGCGCGGCGTCGGCCGCCGCGGCGCGGCGGCTGCGGGAGAAGGAGGCCGAGCTCGACGCCGCACGGCGCCGCGCGGCCGAGCTGGAGGAGCGGCTCCGCCAGGTCGCCGNCGAGAGCCAGGCGTGGTGCGGCTCCCCGCANCAAC] [+] EMBL AU166782 [TCGTCCGCGGCGCTGCTGCCGATCCCCGGGATGATGAAGGTGGCAGGCAGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGTCGACGAGTGGGAGGTCAGCAGGCAGGCGGTGGGGGATGCGCTGGTGTCGTGAGCTGTGCGCGCAGAGCGCGGAGATCGACGCGGTGGTGCGGATGGAGTGCGAGCGGATGCGCGCCGGGCTGGAGCAGGCGCGGAAGCGGCAGTGCCAGGCGGTGGTGCGCGCGGCGTCGGCCGCCGCGGCGCGGCGGCTGCGGGAGAAGGAGGCCGAGCTCGACGCCGCACGGCGCCGCGCGGCCGAGCTGGAGGAGCGGCTCCGCCAGGTCGCCGNCGAGAGCCAGGCGTGGTGCGGCTCCCCGCANCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5033#0 CAGCCACGCCATTCTGTCGCCTCCTCCACTTCTTCTCCTTCGCCATGGCTGTGCAGGCGC 60 consensus_5033#1 ------------------------------------------------------------ consensus_5033#2 ------------------------------------------------------------ consensus_5033#0 AGTATGGGGGTGGGATGGCGGCGGGGATGTGCTTGCCAGACCATGAGGTGGAGGCGCAGA 120 consensus_5033#1 ------------------------------------------------------------ consensus_5033#2 ------------------------------------------------------------ consensus_5033#0 TGCGGGAGCTCGGCGCGATGTTCTCGGCGGCAGGTGGTGGTTGCTACAACGGCGGCGGTG 180 consensus_5033#1 ------------------------------------------------------------ consensus_5033#2 ------------------------------------------------------------ consensus_5033#0 GCGGCGGAGGGTATGACTGCGCCGCCGTGGTGAGCGGCGCGGCGCAGAGCGAGCTGACGT 240 consensus_5033#1 ------------------------------------------------------------ consensus_5033#2 ------------------------------------------------------------ consensus_5033#0 GCAACAACGGTGGTGTTTGTGGTGGTGCGGTGGGGATGGGGGTGGGGGCGGGGAGGAAGC 300 consensus_5033#1 ------------------------------------------------------------ consensus_5033#2 ------------------------------------------------------------ consensus_5033#0 GGGAGAGGGAGGTGGTGGAGCAGTATGCGGCGGTGGCGTCGTCCGCGGCGCTGCTGCCGA 360 consensus_5033#1 ------------------------------------------------------------ consensus_5033#2 ------------------------------------------------------------ consensus_5033#0 TCCCCGGGATGATGAAGGTGGCGGCGCCGGTGAGCCGGTTGGTGGAGTCGGGGATGACGT 420 consensus_5033#1 ------------------------------------------------------------ consensus_5033#2 ------------------------------------------------------------ consensus_5033#0 CGACGAGTGGGAGGTCAGCGGCGGCGGTGGGGGATGCGCTGGTGTCGGAGCTGTGCGCGC 480 consensus_5033#1 -------------------------------------------------GCTGCTCCTCC 11 consensus_5033#2 ------------------------------------------------------TCGTCC 6 * * consensus_5033#0 AGAGCGCGGAGATCGACGCGGTGGTGCGGATGGAGTGCGAGCCCAAGCTGGACGCTTGCC 540 consensus_5033#1 C--ATGCCGCCACCTCTGCC----TCTGCAAGGCGTGCGAGCCCAAGCTGGACGCTTGCC 65 consensus_5033#2 GCGGCGCTGCTGCCGATCCC-----CGGGATGATGAAGGTGGC--AGGCAGCCGGTGAGC 59 ** * * * * * * * * * * ** * ** * * consensus_5033#0 CCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCG 600 consensus_5033#1 CCGTCTGCCTCGCCGCCAAGAACGCCTCCGTCCACATCGCCATCAACTGATCGAACACCG 125 consensus_5033#2 CGGTTGGTGGAGTCGGGGATGACGTCGACGAGTGGGAGGTCAGCAGGCAGGCGGTGGGGG 119 * ** * * ** * *** * ** * ** ** ** * consensus_5033#0 TCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATT 660 consensus_5033#1 TCCTCCTCATCGCCATCGATCTCGCTAACTCCAGATGAGTAATTTAGCTAGACATAGATT 185 consensus_5033#2 ATGCGCTGGT-GTCGTGAGCTGTGC--GCGCAGAGCGCGGAGATCGACGCGGTGGTGCGG 176 ** * * * * ** * * * * * * * * * consensus_5033#0 AGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAA 720 consensus_5033#1 AGGTAGGGGGATTAGCTGAATTGATCCAGTTCGTTTTGTTCTTTTAGTATTAGGGTAAAA 245 consensus_5033#2 ATGGAGTGCGAGCGGATGCGC--GCCGGGCTGGAGCAGGCGCGGAAGCGGCAGTGCC--- 231 * * ** * ** * ** * * * * * ** ** * consensus_5033#0 AAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATT 780 consensus_5033#1 AAAATGATGACATGGTTAAATTCAATTGGCGTTTTGTGTTCATCCCCTCTCTGTAAAATT 305 consensus_5033#2 -AGGCGGTGGTGCGCGCGGCGTCGGCCGCCGCGGCGCG------GCGGCTGCGGGAGAAG 284 * * ** * ** * ** * * * ** * * * consensus_5033#0 ACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTA 840 consensus_5033#1 ACCGCTCAGTGGAAAATTTCACCGTGTCCTCTTTTGGCCTTCCGGGTCAAGAAAAGCTTA 365 consensus_5033#2 GAGGCCGAGCTCGACGCCGCACGGCGCCGCG---CGGCCGAGCTGGAGGAGCGGCTCCGC 341 ** ** * *** * * * **** * ** ** * consensus_5033#0 CAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTT 900 consensus_5033#1 CAAGTTGTAAAAAAAAAAGTCAGGCATCTGATTGTAAAAATTGAATGCATGGCCCTTTTT 425 consensus_5033#2 CAGGTCGCCGNCGAG--AGCCAGGCGT------GGTGCGGCTCCCCGCANCAAC------ 387 ** ** * * ** ***** * * * *** * consensus_5033#0 --------------- consensus_5033#1 TTACCAAACAAAAAA 440 consensus_5033#2 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||