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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1705 fasta sequence
[AAGAACTTCTCCTTCCCCTGCTTCCCCCACCGGCCATGGCCATGTCCATGGCGATGTCGAGAGCTCTCGCCGCGCGGCATCGAAGCCATTTGGGCCACCGAATTGAGGTGAAGAGCCACCATGCGTCCCCGCCGCGGCTTCCTCTTCTTCCTCGGAGTCCCGGGCTCACGCTCGCGTCGCGCCCGCGGATGCTACCGGCGAGGCCCAGGATGTCGTCGAGTGAGTCGGACCTGTCGCCGACGCCGCCGTCGGAGCGCACCATGACGGCCTGGGACCTAGCCAGCCTCTGGGTCGGCCTTGTGGTCGGCGTGCCGTCCTACTACCTCGCCGGCAGCCTCGTCGACCTCGGCATGTCGGCGCTGCAGGGCGTCGCGACCGTCGCGTTCGCCAACCTGGTGGTGCTCGTCTCGCTCGTGCTCACGGCCGCGCCGGCGGTCACGCACGGGCTGCCGTTCCCGGTGCTCGCGCGAGCGGCGTTCGGGGTGCGCGGCGCGCACTTGCCGGCGGTCATCCGCGCGCTCGTCGGCTGCGGGTGGTTCGGCATCGAGTCCTGGATCGGTGGCCGCGCCGTGTTCCTCCTCCTGCCGTCCAGGCTCAAGTCGTACCAGCCGCTGCTCGCGCCGGTGCCAGGCCTCGGTGCAGCGCCGCTGGAGTTCGCGTGCTTCCTCGCGTTCTGGGCCGCGCAGCTCGGCGTCATCATGCACGGGATGGAGGGCATCCGCAAGCTCGAGAAGTACTCGGCGCCGGTGCTCATCGTGCTCACCTCCGCGCTGCTGGCCTGGGCCTACGTGTCCGCCGGCGGCTTCGGGCGCATCCTCTCGCTGCCGCCGAGGCTGACGCGCGCCGAGTTCTGGAAGGTGCTCTTCCCGTCGCTCACCGCGAACATCAGCTTCTGGGCGACGGTGGCCATCAACATACCGGACTTCGCGCGGTACGCGCGGAGCCAGGCGGACCAGGTGCTCGGCCAGGCCGGGCTGCCGGTGTTCATGGGCATGTTCACCTTCGCCGGCCTCGCCGTGACGTCCGCCACCGAGGCCATCTTCGGCCACGTCATCTCCGACCCCATCGAGCTCCTCGGCCGCATCGGCGGGCCGGCGACGACGGTGCTCGCCATCGTCGGCATCAGCCTCGCGACCATCACGACCAACATTGCCGCCAACGTGGTGGCGCCGGCGAACGCGCTCGTCAGCATGAGCCCGCGCAAGTTCACGTTCGCCAAGGGGGCGCTGGTCACCGCGTTGCTCGGCATCGCCTTCCAGCCATGGCGGCTGCTCAGCCCCAGCGAGAGCTTCGTCTACACATGGCTGCTCGGCTACTCGGCTCTCATGGGCCCGATCGGAGGGATCATCCTCGCCGACCACTACATCGTCCGGCGAACCGCGCTGGACGTCGACGCGCTCTACTCGGAGGACAGCCACGGGCCTTACTATTTCCAGGGCGGTTTCAACGTCGCCGCCATGGCGGCGATGGCGGCCGGAGTTGCGCCGATCGTGCCGGGATTCCTGCACAATGTTGGAGTTCTACCGAGCGTCTCCAAGGCATTTGAGACAGCCTACAACAACGCTTGGTTCGTCAGTTTTTTCGTCGCCGGCGCCGTCTACTGCCTGCTCTGTCGCCGGAATAGGAATGAACTGAAACACCAGCACGATTGATTGTAATTTGCAAACACAAAGGAGTAAAAAATGTTGCAAATGATAGTTGAAAG]
[+] EMBL AK106879 [AAGAACTTCTCCTTCCCCTGCTTCCCCCACCGGCCATGGCCATGTCCATGGCGATGTCGAGAGCTCTCGCCGCGCGGCATCGAAGCCATTTGGGCCACCGAATTGAGGTGAAGAGCCACCATGCGTCCCCGCCGCGGCTTCCTCTTCTTCCTCGGAGTCCCGGGCTCACGCTCGCGTCGCGCCCGCGGATGCTACCGGCGAGGCCCAGGATGTCGTCGAGTGAGTCGGACCTGTCGCCGACGCCGCCGTCGGAGCGCACCATGACGGCCTGGGACCTAGCCAGCCTCTGGGTCGGCCTTGTGGTCGGCGTGCCGTCCTACTACCTCGCCGGCAGCCTCGTCGACCTCGGCATGTCGGCGCTGCAGGGCGTCGCGACCGTCGCGTTCGCCAACCTGGTGGTGCTCGTCTCGCTCGTGCTCACGGCCGCGCCGGCGGTCACGCACGGGCTGCCGTTCCCGGTGCTCGCGCGAGCGGCGTTCGGGGTGCGCGGCGCGCACTTGCCGGCGGTCATCCGCGCGCTCGTCGGCTGCGGGTGGTTCGGCATCGAGTCCTGGATCGGTGGCCGCGCCGTGTTCCTCCTCCTGCCGTCCAGGCTCAAGTCGTACCAGCCGCTGCTCGCGCCGGTGCCAGGCCTCGGTGCAGCGCCGCTGGAGTTCGCGTGCTTCCTCGCGTTCTGGGCCGCGCAGCTCGGCGTCATCATGCACGGGATGGAGGGCATCCGCAAGCTCGAGAAGTACTCGGCGCCGGTGCTCATCGTGCTCACCTCCGCGCTGCTGGCCTGGGCCTACGTGTCCGCCGGCGGCTTCGGGCGCATCCTCTCGCTGCCGCCGAGGCTGACGCGCGCCGAGTTCTGGAAGGTGCTCTTCCCGTCGCTCACCGCGAACATCAGCTTCTGGGCGACGGTGGCCATCAACATACCGGACTTCGCGCGGTACGCGCGGAGCCAGGCGGACCAGGTGCTCGGCCAGGCCGGGCTGCCGGTGTTCATGGGCATGTTCACCTTCGCCGGCCTCGCCGTGACGTCCGCCACCGAGGCCATCTTCGGCCACGTCATCTCCGACCCCATCGAGCTCCTCGGCCGCATCGGCGGGCCGGCGACGACGGTGCTCGCCATCGTCGGCATCAGCCTCGCGACCATCACGACCAACATTGCCGCCAACGTGGTGGCGCCGGCGAACGCGCTCGTCAGCATGAGCCCGCGCAAGTTCACGTTCGCCAAGGGGGCGCTGGTCACCGCGTTGCTCGGCATCGCCTTCCAGCCATGGCGGCTGCTCAGCCCCAGCGAGAGCTTCGTCTACACATGGCTGCTCGGCTACTCGGCTCTCATGGGCCCGATCGGAGGGATCATCCTCGCCGACCACTACATCGTCCGGCGAACCGCGCTGGACGTCGACGCGCTCTACTCGGAGGACAGCCACGGGCCTTACTATTTCCAGGGCGGTTTCAACGTCGCCGCCATGGCGGCGATGGCGGCCGGAGTTGCGCCGATCGTGCCGGGATTCCTGCACAATGTTGGAGTTCTACCGAGCGTCTCCAAGGCATTTGAGACAGCCTACAACAACGCTTGGTTCGTCAGTTTTTTCGTCGCCGGCGCCGTCTACTGCCTGCTCTGTCGCCGGAATAGGAATGAACTGAAACACCAGCACGATTGATTGTAATTTGCAAACACAAAGGAGTAAAAAATGTTGCAAATGATAGTTGAAAG]
[+] EMBL AU225219 [ gCCGC TTGGACGTCGACGCGCTCTACTCGGAGGACAGCCACGGGCCTTACTATTTCCAGGGCGGTTTCAACGTCGCCGCCATGGCGGCGATGGCGGCCGGAGTTGCGCCGATCGTGCCGGGATTCCTGCACAATGTTGGAGTTCTACCGAGCGTCTCCAAGGCATTTGANACAGCCTACAACAACGCTTGGTTCGTCAGTTTTTTCGTCGCCGGCGCCGTCTACTGCCTGCTCTGTCNCCGGAATANGAATG ]
consensusID : consensus_5034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[GGAGAGGCGTGCACGGGCTCCCGTTCCCGGTGCTCGCGCGTACGGCGTTCGGGGTGCGCAGCACGCACTTGCCGCGGTCATTAGCGTGCTCATCGTTGCGGGTGGTTCGGCATCGAATCCTGGATCGGTGCCGCGCTGTGTTCCTCCTCCTGCCGTCCAGGCTCAAAGTCGTACCAGCCGCTGCTCGCGCCAATGCCAGGCCTGGGGCTGCGCCGCTGGAGTTCGCGTGCTTCCTCGCTTTCTGGCCGCGCAGCTCGGCGTCATCATGCACGGCATGGAGGGCATCAGCAAGCTCGAGAAGTACTTGGACCATCACGACCAACATTCCCGCCAACGTGGTGGCGCCAGCAAACGCGCTCGTCAGCTTGAGCCCGCTGAAGTTCACGTTCGCCAAGGTGGCGCTGGTCACTGCGTTGCTCGGCATCGCCTTCCAGCCATGGCGGCTGTTCGGCTCCAGCGAGAGCTTCATCTACACATGCCCGTTCGAGCTCTCATCCGCCACCACGCCGCTTAGAGATCCAAGCTAC]
[+] EMBL BI810756 [GGAGAGGCGTGCACGGGCTCCCGTTCCCGGTGCTCGCGCGTACGGCGTTCGGGGTGCGCAGCACGCACTTGCCGCGGTCATTAGCGTGCTCATCGTTGCGGGTGGTTCGGCATCGAATCCTGGATCGGTGCCGCGCTGTGTTCCTCCTCCTGCCGTCCAGGCTCAAAGTCGTACCAGCCGCTGCTCGCGCCAATGCCAGGCCTGGGGCTGCGCCGCTGGAGTTCGCGTGCTTCCTCGCTTTCTGGCCGCGCAGCTCGGCGTCATCATGCACGGCATGGAGGGCATCAGCAAGCTCGAGAAGTACTTGGACCATCACGACCAACATTCCCGCCAACGTGGTGGCGCCAGCAAACGCGCTCGTCAGCTTGAGCCCGCTGAAGTTCACGTTCGCCAAGGTGGCGCTGGTCACTGCGTTGCTCGGCATCGCCTTCCAGCCATGGCGGCTGTTCGGCTCCAGCGAGAGCTTCATCTACACATGCCCGTTCGAGCTCTCATCCGCCACCACGCCGCTTAGAGATCCAAGCTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5034#0 AAGAACTTCTCCTTCCCCTGCTTCCCCCACCGGCCATGGCCATGTCCATGGCGATGTCGA 60
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 GAGCTCTCGCCGCGCGGCATCGAAGCCATTTGGGCCACCGAATTGAGGTGAAGAGCCACC 120
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 ATGCGTCCCCGCCGCGGCTTCCTCTTCTTCCTCGGAGTCCCGGGCTCACGCTCGCGTCGC 180
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 GCCCGCGGATGCTACCGGCGAGGCCCAGGATGTCGTCGAGTGAGTCGGACCTGTCGCCGA 240
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 CGCCGCCGTCGGAGCGCACCATGACGGCCTGGGACCTAGCCAGCCTCTGGGTCGGCCTTG 300
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 TGGTCGGCGTGCCGTCCTACTACCTCGCCGGCAGCCTCGTCGACCTCGGCATGTCGGCGC 360
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 TGCAGGGCGTCGCGACCGTCGCGTTCGCCAACCTGGTGGTGCTCGTCTCGCTCGTGCTCA 420
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 CGGCCGCGCCGGCGGTCACGCACGGGCTGCCGTTCCCGGTGCTCGCGCGAGCGGCGTTCG 480
consensus_5034#1 ---------GGAGAGGCGTGCACGGGCTCCCGTTCCCGGTGCTCGCGCGTACGGCGTTCG 51
* * * ********* ******************** *********
consensus_5034#0 GGGTGCGCGGCGCGCACTTGCCGGCGGTCATCCGCGCGCTCGTCGGCTGCGGGTGGTTCG 540
consensus_5034#1 GGGTGCGCAGCACGCACTTGCCG-CGGTCATTAGCGTGCTCATCG-TTGCGGGTGGTTCG 109
******** ** *********** ******* *** **** *** *************
consensus_5034#0 GCATCGAGTCCTGGATCGGTGGCCGCGCCGTGTTCCTCCTCCTGCCGTCCAGGCTCAA-G 599
consensus_5034#1 GCATCGAATCCTGGATCGGTG-CCGCGCTGTGTTCCTCCTCCTGCCGTCCAGGCTCAAAG 168
******* ************* ****** ***************************** *
consensus_5034#0 TCGTACCAGCCGCTGCTCGCGCCGGTGCCAGGCCTCGGTGCAGCGCCGCTGGAGTTCGCG 659
consensus_5034#1 TCGTACCAGCCGCTGCTCGCGCCAATGCCAGGCCT-GGGGCTGCGCCGCTGGAGTTCGCG 227
*********************** ********** ** ** ******************
consensus_5034#0 TGCTTCCTCGCGTTCTGGGCCGCGCAGCTCGGCGTCATCATGCACGGGATGGAGGGCATC 719
consensus_5034#1 TGCTTCCTCGCTTTCTGG-CCGCGCAGCTCGGCGTCATCATGCACGGCATGGAGGGCATC 286
*********** ****** **************************** ************
consensus_5034#0 CGCAAGCTCGAGAAGTACTCGGCGC-CGGTGCTCATCGTGCTCACCTCCGCGCTGCTGGC 778
consensus_5034#1 AGCAAGCTCGAGAAGTACTTGGACCATCACGACCAACATTCCCGCCAACG---TGGTGGC 343
****************** ** * * ** * * * * ** ** ** ****
consensus_5034#0 CTGGGCCTACGTGTCCGCCGGCGGCTTCGGGCGCATCCTCTCGCTGCCGCCGAGGCTGAC 838
consensus_5034#1 GCCAGCAAACGCGCTCGTCAGC--TTGAGCCCGCTGAAGTTCACGTTCGCCAAGG-TGGC 400
** *** * ** * ** * * *** ** * **** *** ** *
consensus_5034#0 GCGCGCCGAGTTCTGGAAGGTGCTCTTCCCGTCGCTCACCGCGAACATCAGCTTCTGGGC 898
consensus_5034#1 GCTGGTCACTGCGTTGCTCG-GCATCGCCTTCCAGCCATGGCGGCTGTTCGGCTCCAG-C 458
** * * * * * ** ** * ** *** * * ** * *
consensus_5034#0 GACGGTGGCCATCAACATACCGGACTTCGCGCGGTACGCGCGGAGCCAGGCGGACCAGGT 958
consensus_5034#1 GAGAGCT-TCATCTACACATGCCCGTTCGAGCTCT-CATCCGCCACCACGCCGCTTAGAG 516
** * **** *** * **** ** * * ** *** ** * **
consensus_5034#0 GCTCGGCCAGGCCGGGCTGCCGGTGTTCATGGGCATGTTCACCTTCGCCGGCCTCGCCGT 1018
consensus_5034#1 ATCCAAGCTAC------------------------------------------------- 527
* *
consensus_5034#0 GACGTCCGCCACCGAGGCCATCTTCGGCCACGTCATCTCCGACCCCATCGAGCTCCTCGG 1078
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 CCGCATCGGCGGGCCGGCGACGACGGTGCTCGCCATCGTCGGCATCAGCCTCGCGACCAT 1138
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 CACGACCAACATTGCCGCCAACGTGGTGGCGCCGGCGAACGCGCTCGTCAGCATGAGCCC 1198
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 GCGCAAGTTCACGTTCGCCAAGGGGGCGCTGGTCACCGCGTTGCTCGGCATCGCCTTCCA 1258
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 GCCATGGCGGCTGCTCAGCCCCAGCGAGAGCTTCGTCTACACATGGCTGCTCGGCTACTC 1318
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 GGCTCTCATGGGCCCGATCGGAGGGATCATCCTCGCCGACCACTACATCGTCCGGCGAAC 1378
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 CGCGCTGGACGTCGACGCGCTCTACTCGGAGGACAGCCACGGGCCTTACTATTTCCAGGG 1438
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 CGGTTTCAACGTCGCCGCCATGGCGGCGATGGCGGCCGGAGTTGCGCCGATCGTGCCGGG 1498
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 ATTCCTGCACAATGTTGGAGTTCTACCGAGCGTCTCCAAGGCATTTGAGACAGCCTACAA 1558
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 CAACGCTTGGTTCGTCAGTTTTTTCGTCGCCGGCGCCGTCTACTGCCTGCTCTGTCGCCG 1618
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 GAATAGGAATGAACTGAAACACCAGCACGATTGATTGTAATTTGCAAACACAAAGGAGTA 1678
consensus_5034#1 ------------------------------------------------------------
consensus_5034#0 AAAAATGTTGCAAATGATAGTTGAAAG 1705
consensus_5034#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||