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Oryza sativa
cluster # 5039 cluster # 5039       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5039#0 length = 1578 sequences # 1  
consensus_5039#1 length = 1526 sequences # 2  

consensusID : consensus_5039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1578
fasta sequence
                              [TGTTCCCGTCGCTGGGCGTCGGACACCTGAACCCCATGGTGGAGCTGGCCAAGCACCTGCACCGCCAAGGCCTCGGCGTCGTCGTCGCGGTGATCGACCCACGCGACGATGATGCCACGTCGGCCGACGCGACGGCGCGCCTCGCCGCGGCCAACCCTTCCGTCACGTTCCGCATCCTGCCGGCGCCGGCCACGGCCAGCCCGGACCCCGGCCCGCACCGTGTCAGGCGCAGCCTCGACACGCTCCGGCTCGCCAACCCGGTGCTCCTGGAGTTCCTCCGCTCGCTGCCGGCCGCTGTCGACGCGCTCCTGCTCGACATGTTCTGCGTCGACGCGCTCGACGTCGCGGCCGAGCTCGCCATCCCCGCATACTTCTTCTTCCCCTCCCCGGCAAGCGCCCTCGCCGTCTTCCTCCACCTCCCGCATTACTACGCCAACGGGACGTCATTCAGGGAGATGGGACAAGGAGAGCGAGACGACCAAGATCAGGTTGTACCAGTTCAAGCGGATGATGGAAGGGAAGGGCGTGCTGGTGAACAGCTTCGACTGGCTGGAGCCCAAGGCCCTGAAAGCGCTCGCCGCCGGTGTCTGCGTGCCCGACAAGCCCACGCCGAGCGTCTACTGCGTCGGGCCACTGGTCGACACCGGCAACAAGGTAGGGAGCGGCGCCGAGAGGCGCCATGCGTGCCTCGTGTGGCTTGACGCCCAGCCGCGGCGGAGCGTCGTGTTCCTCTCCTTCGGCAGCCAGGGCGCGCTCCCGGCGGCGCAGCTGAAGGAGATAGCTCGTGGGCTCGAGAGCTCCGGCCACCGCTTCCTGTGGGTCGTGAGGAGCCCGCCGGAGGAGCAGGCCACATCACCGGAGCCGGACCTGGAGCGGCTGCTTCCGGCGGGGTTCTTGGAGAGGACGAAGGGCACAGGCATGGTGGCCAAGAACTGGGCGCCACAGGCGGAGGTGGTGCAACACGAGGCGGTCGGCGTGTTCGTCACGCACTGCGGGTGGAACTCGACGCTGGAGGCGATCATGTCGGCGCTGCCGATGATATGCTGGCCGCTGTACGCGGAGCAGGCGATGAACAAGGTGATCATGGTGGAGGAGATGAAGATCGCCGTGCCGCTCGACGGCTACGAGGAAGGAGGGTTGGTGAAGGCCGAGGAAGTGGAGGCGAAGGTGAGGCTGGTGATGGAGACCGAGGAAGGGAGGAAGCTCAGGGAGAAGCTGGTGGAGACGAGGGACATGGCGTTGGATGCCGTCAAGGAAGGTGGGTCTTCTGAAGTGGCATTTGATGAGTTCATGAGAGATTTGGAGAAGAGCAGCTTGGAGAATGGCGTTTGTAGCTGATCAAGCAGAGTTACGCTCATGACCGAATAGAAATGGTGATGGTTTCTTGATTCCATTTTTTTTTTTAAGGTTGGCGTAACTGAGGACTCTGCATAACTGTATTGGTGCATCAATGCGTAGCTGATGGGTGGGGGCTAACAGAAAGGAAAAATTTCAAAAACCACCCCAAATATCACTCTAAGTTTAAGATGCCCCCCTATAAGAAGATTTGTTGCAAATTCCCACCTCCTAATTCACCTT]

[+] EMBL AK068878             [TGTTCCCGTCGCTGGGCGTCGGACACCTGAACCCCATGGTGGAGCTGGCCAAGCACCTGCACCGCCAAGGCCTCGGCGTCGTCGTCGCGGTGATCGACCCACGCGACGATGATGCCACGTCGGCCGACGCGACGGCGCGCCTCGCCGCGGCCAACCCTTCCGTCACGTTCCGCATCCTGCCGGCGCCGGCCACGGCCAGCCCGGACCCCGGCCCGCACCGTGTCAGGCGCAGCCTCGACACGCTCCGGCTCGCCAACCCGGTGCTCCTGGAGTTCCTCCGCTCGCTGCCGGCCGCTGTCGACGCGCTCCTGCTCGACATGTTCTGCGTCGACGCGCTCGACGTCGCGGCCGAGCTCGCCATCCCCGCATACTTCTTCTTCCCCTCCCCGGCAAGCGCCCTCGCCGTCTTCCTCCACCTCCCGCATTACTACGCCAACGGGACGTCATTCAGGGAGATGGGACAAGGAGAGCGAGACGACCAAGATCAGGTTGTACCAGTTCAAGCGGATGATGGAAGGGAAGGGCGTGCTGGTGAACAGCTTCGACTGGCTGGAGCCCAAGGCCCTGAAAGCGCTCGCCGCCGGTGTCTGCGTGCCCGACAAGCCCACGCCGAGCGTCTACTGCGTCGGGCCACTGGTCGACACCGGCAACAAGGTAGGGAGCGGCGCCGAGAGGCGCCATGCGTGCCTCGTGTGGCTTGACGCCCAGCCGCGGCGGAGCGTCGTGTTCCTCTCCTTCGGCAGCCAGGGCGCGCTCCCGGCGGCGCAGCTGAAGGAGATAGCTCGTGGGCTCGAGAGCTCCGGCCACCGCTTCCTGTGGGTCGTGAGGAGCCCGCCGGAGGAGCAGGCCACATCACCGGAGCCGGACCTGGAGCGGCTGCTTCCGGCGGGGTTCTTGGAGAGGACGAAGGGCACAGGCATGGTGGCCAAGAACTGGGCGCCACAGGCGGAGGTGGTGCAACACGAGGCGGTCGGCGTGTTCGTCACGCACTGCGGGTGGAACTCGACGCTGGAGGCGATCATGTCGGCGCTGCCGATGATATGCTGGCCGCTGTACGCGGAGCAGGCGATGAACAAGGTGATCATGGTGGAGGAGATGAAGATCGCCGTGCCGCTCGACGGCTACGAGGAAGGAGGGTTGGTGAAGGCCGAGGAAGTGGAGGCGAAGGTGAGGCTGGTGATGGAGACCGAGGAAGGGAGGAAGCTCAGGGAGAAGCTGGTGGAGACGAGGGACATGGCGTTGGATGCCGTCAAGGAAGGTGGGTCTTCTGAAGTGGCATTTGATGAGTTCATGAGAGATTTGGAGAAGAGCAGCTTGGAGAATGGCGTTTGTAGCTGATCAAGCAGAGTTACGCTCATGACCGAATAGAAATGGTGATGGTTTCTTGATTCCATTTTTTTTTTTAAGGTTGGCGTAACTGAGGACTCTGCATAACTGTATTGGTGCATCAATGCGTAGCTGATGGGTGGGGGCTAACAGAAAGGAAAAATTTCAAAAACCACCCCAAATATCACTCTAAGTTTAAGATGCCCCCCTATAAGAAGATTTGTTGCAAATTCCCACCTCCTAATTCACCTT]


>consensus_5039#0 TGTTCCCGTCGCTGGGCGTCGGACACCTGAACCCCATGGTGGAGCTGGCCAAGCACCTGC ACCGCCAAGGCCTCGGCGTCGTCGTCGCGGTGATCGACCCACGCGACGATGATGCCACGT CGGCCGACGCGACGGCGCGCCTCGCCGCGGCCAACCCTTCCGTCACGTTCCGCATCCTGC CGGCGCCGGCCACGGCCAGCCCGGACCCCGGCCCGCACCGTGTCAGGCGCAGCCTCGACA CGCTCCGGCTCGCCAACCCGGTGCTCCTGGAGTTCCTCCGCTCGCTGCCGGCCGCTGTCG ACGCGCTCCTGCTCGACATGTTCTGCGTCGACGCGCTCGACGTCGCGGCCGAGCTCGCCA TCCCCGCATACTTCTTCTTCCCCTCCCCGGCAAGCGCCCTCGCCGTCTTCCTCCACCTCC CGCATTACTACGCCAACGGGACGTCATTCAGGGAGATGGGACAAGGAGAGCGAGACGACC AAGATCAGGTTGTACCAGTTCAAGCGGATGATGGAAGGGAAGGGCGTGCTGGTGAACAGC TTCGACTGGCTGGAGCCCAAGGCCCTGAAAGCGCTCGCCGCCGGTGTCTGCGTGCCCGAC AAGCCCACGCCGAGCGTCTACTGCGTCGGGCCACTGGTCGACACCGGCAACAAGGTAGGG AGCGGCGCCGAGAGGCGCCATGCGTGCCTCGTGTGGCTTGACGCCCAGCCGCGGCGGAGC GTCGTGTTCCTCTCCTTCGGCAGCCAGGGCGCGCTCCCGGCGGCGCAGCTGAAGGAGATA GCTCGTGGGCTCGAGAGCTCCGGCCACCGCTTCCTGTGGGTCGTGAGGAGCCCGCCGGAG GAGCAGGCCACATCACCGGAGCCGGACCTGGAGCGGCTGCTTCCGGCGGGGTTCTTGGAG AGGACGAAGGGCACAGGCATGGTGGCCAAGAACTGGGCGCCACAGGCGGAGGTGGTGCAA CACGAGGCGGTCGGCGTGTTCGTCACGCACTGCGGGTGGAACTCGACGCTGGAGGCGATC ATGTCGGCGCTGCCGATGATATGCTGGCCGCTGTACGCGGAGCAGGCGATGAACAAGGTG ATCATGGTGGAGGAGATGAAGATCGCCGTGCCGCTCGACGGCTACGAGGAAGGAGGGTTG GTGAAGGCCGAGGAAGTGGAGGCGAAGGTGAGGCTGGTGATGGAGACCGAGGAAGGGAGG AAGCTCAGGGAGAAGCTGGTGGAGACGAGGGACATGGCGTTGGATGCCGTCAAGGAAGGT GGGTCTTCTGAAGTGGCATTTGATGAGTTCATGAGAGATTTGGAGAAGAGCAGCTTGGAG AATGGCGTTTGTAGCTGATCAAGCAGAGTTACGCTCATGACCGAATAGAAATGGTGATGG TTTCTTGATTCCATTTTTTTTTTTAAGGTTGGCGTAACTGAGGACTCTGCATAACTGTAT TGGTGCATCAATGCGTAGCTGATGGGTGGGGGCTAACAGAAAGGAAAAATTTCAAAAACC ACCCCAAATATCACTCTAAGTTTAAGATGCCCCCCTATAAGAAGATTTGTTGCAAATTCC CACCTCCTAATTCACCTT



consensusID : consensus_5039#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1526
fasta sequence
                              [GATCGATCGGAGCCATGAGGACAAAGACGTTTGTGTTGTTCCCGTCTCTTGGCGTCGGCCACCTCAACCCCATGGTGGAGATGGCCAAGCACCTGCGCCGCCGCGGCCTCGCCGTCGTCGTCGTGGTGATCGACCCGCCCGACAACGACGCCACCTGGCCGACGCGACGGCGCGCCTCGCCGCGGCCAACCCGTCCATCACGTTCCGCCTCCTGCCGGCGCCGCCCAGCCCGGACGCCGCCGCGCACCCGGCCAGGCGCGCCCTCGACGCGCTCCGCCTGGCCAACCCCGTGCTCCGGGAGTTCCTCCGCTCGCTGCCCGACGCCGCCGACGCCCTCCTGCTCGACGCGTTCTGCGTCGACGCGCTCGACGTCGCGGCCGAGCTCGCCATCCCCGCCTACTTCTTCTTCCCGACAAGCCCACGCCGAGGGTCTACTGCATCGGGCCACTGGTCGACGCCGCCGCCGGCAAGAACGGCGAGAGACACCCGTGCCTCGCGTGGCTGGACGCGCAGCCGCGCCAGAGTGTCGTGTTCCTCTGCTTCGGCAGCAAGGGCGCGTTCCCGGCGGCGCAGCTGAAGGACATAGCTCGTGGGCTGGAGAACTCCGGCCACCGTTTCCTGTGGGCAGTGAGGAGCCCGCCGGAGGAGCAGAGCACATCGCCGGAGCCTGACCTGGAGCGGCTGCTGCCGGCGGGGTTCTTGGAGAGGACGAAGCATCGCGGCATGGTGGTCAAGAACTGGGCGCCACAGGCGGAGGTGGTGCGGCACGAGGCGGCCGGCGCGTTCGTGACGCACTGCGGGTGGAACTCGACGCTGGAGGCGATCATGTCGGCGCTGCCGATGATTTGCTGGCCGCTTTACACGGAGCAGGCGATGAACAGGGTGCTCATGGTGGAGGAGATGAAGGTCGCCGTGGCGCTCGACGGCGGCGAGGTGGGTGGCGCGTTGGTGGCGGTGGCGGCGGAGGAGGTGGAGGCGAAGGTGAGGCTGGTGATGGAGACCGAGGAAGGGAGGAAGCTCAGGGAGAGGGTGGTGGAGACGAGAGACATGGCGCTGGATGCCATCAACGGAGGTGGGTCTTCTGAGATTGCATTTGATGAGTTCATGAGGGATTTGGAGAAGATGAACAGCTTGGAGAACGGAGGAGGACGCAGCTGCTGATCAAGCAGGATTTCACCATGACACGAGAACTATTATTGATCATAGAAAATATTGATCCATTAAAAACAGTTGTGGCATGGTGTTCTTTTACAGTAAAAGCAGTTGTCTTTCGGAGTTAAGCAGGTGTTTTGGCGAGGCGTTTGTAAACCCCTTGTTGGCCTAGTGGCAATTGGTCACGCTTAGCGGTGGTCGGCTTGGTAATAGTGTCTTCTCCAGGGTATTGTGTGAGGAGTTGCCAACTCGTGGTGTCGGTATGTTTGTTTTTGTTTCTCCTAGTTACAATCTTTCCAGGGTTGTGATATTGTTTTTTTTTTTCTGCTATCAATATAAACTCCGTACTGTCTTATNNAANANNNNNNANNAAA]

[+] EMBL AK109007             [GATCGATCGGAGCCATGAGGACAAAGACGTTTGTGTTGTTCCCGTCTCTTGGCGTCGGCCACCTCAACCCCATGGTGGAGATGGCCAAGCACCTGCGCCGCCGCGGCCTCGCCGTCGTCGTCGTGGTGATCGACCCGCCCGACAACGACGCCACCTGGCCGACGCGACGGCGCGCCTCGCCGCGGCCAACCCGTCCATCACGTTCCGCCTCCTGCCGGCGCCGCCCAGCCCGGACGCCGCCGCGCACCCGGCCAGGCGCGCCCTCGACGCGCTCCGCCTGGCCAACCCCGTGCTCCGGGAGTTCCTCCGCTCGCTGCCCGACGCCGCCGACGCCCTCCTGCTCGACGCGTTCTGCGTCGACGCGCTCGACGTCGCGGCCGAGCTCGCCATCCCCGCCTACTTCTTCTTCCCGACAAGCCCACGCCGAGGGTCTACTGCATCGGGCCACTGGTCGACGCCGCCGCCGGCAAGAACGGCGAGAGACACCCGTGCCTCGCGTGGCTGGACGCGCAGCCGCGCCAGAGTGTCGTGTTCCTCTGCTTCGGCAGCAAGGGCGCGTTCCCGGCGGCGCAGCTGAAGGACATAGCTCGTGGGCTGGAGAACTCCGGCCACCGTTTCCTGTGGGCAGTGAGGAGCCCGCCGGAGGAGCAGAGCACATCGCCGGAGCCTGACCTGGAGCGGCTGCTGCCGGCGGGGTTCTTGGAGAGGACGAAGCATCGCGGCATGGTGGTCAAGAACTGGGCGCCACAGGCGGAGGTGGTGCGGCACGAGGCGGCCGGCGCGTTCGTGACGCACTGCGGGTGGAACTCGACGCTGGAGGCGATCATGTCGGCGCTGCCGATGATTTGCTGGCCGCTTTACACGGAGCAGGCGATGAACAGGGTGCTCATGGTGGAGGAGATGAAGGTCGCCGTGGCGCTCGACGGCGGCGAGGTGGGTGGCGCGTTGGTGGCGGTGGCGGCGGAGGAGGTGGAGGCGAAGGTGAGGCTGGTGATGGAGACCGAGGAAGGGAGGAAGCTCAGGGAGAGGGTGGTGGAGACGAGAGACATGGCGCTGGATGCCATCAACGGAGGTGGGTCTTCTGAGATTGCATTTGATGAGTTCATGAGGGATTTGGAGAAGATGAACAGCTTGGAGAACGGAGGAGGACGCAGCTGCTGATCAAGCAGGATTTCACCATGACACGAGAACTATTATTGATCATAGAAAATATTGATCCATTAAAAACAGTTGTGGCATGGTGTTCTTTTACAGTAAAAGCAGTTGTCTTTCGGAGTTAAGCAGGTGTTTTGGCGAGGCGTTTGTAAACCCCTTGTTGGCCTAGTGGCAATTGGTCACGCTTAGCGGTGGTCGGCTTGGTAATAGTGTCTTCTCCAGGGTATTGTGTGAGGAGTTGCCAACTCGTGGTGTCGGTATGTTTGTTTTTGTTTCTCCTAGTTACAATCTTTCCAGGGTTGTGATATTGTTTTTTTTTTTCTGCTATCAATATAAACTCCGTACTGTCTTAT                  ]
[+] EMBL CA755931             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGATGAACAGCTTGGAGAACGGAGGAGGACGCAGCTGCTGATCAAGCAGGATTTCACCATGACACGAGAACTATTATTGATCATAGAAAATATTGATCCATTAAAAACAGTTGTGGCATGGTGTTCTTTTACAGTAAAAGCAGTTGTCTTTCGGAGTTAAGCAGGTGTTTTGGCGAGGCGTTTGTAAACCCCTTGTTGGCCTAGTGGCAATTGGTCACGCTTAGCGGTGGTCGGCTTGGTAATAGTGTCTTCTCCAGGGTATTGTGTGAGGAGTTGCCAACTCGTGGTGTCGGTATGTTTGTTTTTGTTTCTCCTAGTTACAATCTTTCCAGGGTTGTGATATTG TTTTTTTTTTCTGCTATCAATATAAACTCCGTACTGTCTTANNNAANANNNNNNANNAAA]


>consensus_5039#1 GATCGATCGGAGCCATGAGGACAAAGACGTTTGTGTTGTTCCCGTCTCTTGGCGTCGGCC ACCTCAACCCCATGGTGGAGATGGCCAAGCACCTGCGCCGCCGCGGCCTCGCCGTCGTCG TCGTGGTGATCGACCCGCCCGACAACGACGCCACCTGGCCGACGCGACGGCGCGCCTCGC CGCGGCCAACCCGTCCATCACGTTCCGCCTCCTGCCGGCGCCGCCCAGCCCGGACGCCGC CGCGCACCCGGCCAGGCGCGCCCTCGACGCGCTCCGCCTGGCCAACCCCGTGCTCCGGGA GTTCCTCCGCTCGCTGCCCGACGCCGCCGACGCCCTCCTGCTCGACGCGTTCTGCGTCGA CGCGCTCGACGTCGCGGCCGAGCTCGCCATCCCCGCCTACTTCTTCTTCCCGACAAGCCC ACGCCGAGGGTCTACTGCATCGGGCCACTGGTCGACGCCGCCGCCGGCAAGAACGGCGAG AGACACCCGTGCCTCGCGTGGCTGGACGCGCAGCCGCGCCAGAGTGTCGTGTTCCTCTGC TTCGGCAGCAAGGGCGCGTTCCCGGCGGCGCAGCTGAAGGACATAGCTCGTGGGCTGGAG AACTCCGGCCACCGTTTCCTGTGGGCAGTGAGGAGCCCGCCGGAGGAGCAGAGCACATCG CCGGAGCCTGACCTGGAGCGGCTGCTGCCGGCGGGGTTCTTGGAGAGGACGAAGCATCGC GGCATGGTGGTCAAGAACTGGGCGCCACAGGCGGAGGTGGTGCGGCACGAGGCGGCCGGC GCGTTCGTGACGCACTGCGGGTGGAACTCGACGCTGGAGGCGATCATGTCGGCGCTGCCG ATGATTTGCTGGCCGCTTTACACGGAGCAGGCGATGAACAGGGTGCTCATGGTGGAGGAG ATGAAGGTCGCCGTGGCGCTCGACGGCGGCGAGGTGGGTGGCGCGTTGGTGGCGGTGGCG GCGGAGGAGGTGGAGGCGAAGGTGAGGCTGGTGATGGAGACCGAGGAAGGGAGGAAGCTC AGGGAGAGGGTGGTGGAGACGAGAGACATGGCGCTGGATGCCATCAACGGAGGTGGGTCT TCTGAGATTGCATTTGATGAGTTCATGAGGGATTTGGAGAAGATGAACAGCTTGGAGAAC GGAGGAGGACGCAGCTGCTGATCAAGCAGGATTTCACCATGACACGAGAACTATTATTGA TCATAGAAAATATTGATCCATTAAAAACAGTTGTGGCATGGTGTTCTTTTACAGTAAAAG CAGTTGTCTTTCGGAGTTAAGCAGGTGTTTTGGCGAGGCGTTTGTAAACCCCTTGTTGGC CTAGTGGCAATTGGTCACGCTTAGCGGTGGTCGGCTTGGTAATAGTGTCTTCTCCAGGGT ATTGTGTGAGGAGTTGCCAACTCGTGGTGTCGGTATGTTTGTTTTTGTTTCTCCTAGTTA CAATCTTTCCAGGGTTGTGATATTGTTTTTTTTTTTCTGCTATCAATATAAACTCCGTAC TGTCTTATNNAANANNNNNNANNAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5039#0      ------------------------------------TGTTCCCGTCGCTGGGCGTCGGAC 24
consensus_5039#1      GATCGATCGGAGCCATGAGGACAAAGACGTTTGTGTTGTTCCCGTCTCTTGGCGTCGGCC 60
                                                          ********** ** ******** *

consensus_5039#0      ACCTGAACCCCATGGTGGAGCTGGCCAAGCACCTGCACCGCCAAGGCCTCGGCGTCGTCG 84
consensus_5039#1      ACCTCAACCCCATGGTGGAGATGGCCAAGCACCTGCGCCGCCGCGGCCTCGCCGTCGTCG 120
                      **** *************** *************** *****  ******* ********

consensus_5039#0      TCGCGGTGATCGACCCACGCGACGATGATGCCACGTCGGCCGACGCGACGGCGCGCCTCG 144
consensus_5039#1      TCGTGGTGATCGACCCGCCCGACAACGACGCCAC-CTGGCCGACGCGACGGCGCGCCTCG 179
                      *** ************ * **** * ** *****   ***********************

consensus_5039#0      CCGCGGCCAACCCTTCCGTCACGTTCCGCATCCTGCCGGCGCCGGCCACGGCCAGCCCGG 204
consensus_5039#1      CCGCGGCCAACCCGTCCATCACGTTCCGCCTCCTGCCGGCGCCGCC------CAGCCCGG 233
                      ************* *** *********** ************** *      ********

consensus_5039#0      ACCCCGGCCCGCACCGTGTCAGGCGCAGCCTCGACACGCTCCGGCTCGCCAACCCGGTGC 264
consensus_5039#1      ACGCCGCCGCGCACCCGGCCAGGCGCGCCCTCGACGCGCTCCGCCTGGCCAACCCCGTGC 293
                      ** *** * ******  * *******  ******* ******* ** ******** ****

consensus_5039#0      TCCTGGAGTTCCTCCGCTCGCTGCCGGCCGCTGTCGACGCGCTCCTGCTCGACATGTTCT 324
consensus_5039#1      TCCGGGAGTTCCTCCGCTCGCTGCCCGACGCCGCCGACGCCCTCCTGCTCGACGCGTTCT 353
                      *** ********************* * *** * ****** ************  *****

consensus_5039#0      GCGTCGACGCGCTCGACGTCGCGGCCGAGCTCGCCATCCCCGCATACTTCTTCTTCCCCT 384
consensus_5039#1      GCGTCGACGCGCTCGACGTCGCGGCCGAGCTCGCCATCCCCGCCTACTTCTTCTTCCC-- 411
                      ******************************************* **************  

consensus_5039#0      CCCCGGCAAGCGCCCTCGCCGTCTTCCTCCACCTCCCGCATTACTACGCCAACGGGACGT 444
consensus_5039#1      ------------------------------------------------------------
                                                                                  

consensus_5039#0      CATTCAGGGAGATGGGACAAGGAGAGCGAGACGACCAAGATCAGGTTGTACCAGTTCAAG 504
consensus_5039#1      ------------------------------------------------------------
                                                                                  

consensus_5039#0      CGGATGATGGAAGGGAAGGGCGTGCTGGTGAACAGCTTCGACTGGCTGGAGCCCAAGGCC 564
consensus_5039#1      ------------------------------------------------------------
                                                                                  

consensus_5039#0      CTGAAAGCGCTCGCCGCCGGTGTCTGCGTGCCCGACAAGCCCACGCCGAGCGTCTACTGC 624
consensus_5039#1      ---------------------------------GACAAGCCCACGCCGAGGGTCTACTGC 438
                                                       ***************** *********

consensus_5039#0      GTCGGGCCACTGGTCGACACCGGCAACAAGGTAGGGAGCGGCGCCGAGAGGCGCCATGCG 684
consensus_5039#1      ATCGGGCCACTGGTCGACGCCGCCGCC--GGCAAGAA----CGGCGAGAGACACC---CG 489
                       ***************** *** *  *  ** * * *    ** ****** * **   **

consensus_5039#0      TGCCTCGTGTGGCTTGACGCCCAGCCGCGGCGGAGCGTCGTGTTCCTCTCCTTCGGCAGC 744
consensus_5039#1      TGCCTCGCGTGGCTGGACGCGCAGCCGCGCCAGAGTGTCGTGTTCCTCTGCTTCGGCAGC 549
                      ******* ****** ***** ******** * *** ************* **********

consensus_5039#0      CAGGGCGCGCTCCCGGCGGCGCAGCTGAAGGAGATAGCTCGTGGGCTCGAGAGCTCCGGC 804
consensus_5039#1      AAGGGCGCGTTCCCGGCGGCGCAGCTGAAGGACATAGCTCGTGGGCTGGAGAACTCCGGC 609
                       ******** ********************** ************** **** *******

consensus_5039#0      CACCGCTTCCTGTGGGTCGTGAGGAGCCCGCCGGAGGAGCAGGCCACATCACCGGAGCCG 864
consensus_5039#1      CACCGTTTCCTGTGGGCAGTGAGGAGCCCGCCGGAGGAGCAGAGCACATCGCCGGAGCCT 669
                      ***** **********  ************************  ****** ******** 

consensus_5039#0      GACCTGGAGCGGCTGCTTCCGGCGGGGTTCTTGGAGAGGACGAAGGGCACAGGCATGGTG 924
consensus_5039#1      GACCTGGAGCGGCTGCTGCCGGCGGGGTTCTTGGAGAGGACGAAGCATCGCGGCATGGTG 729
                      ***************** ***************************      *********

consensus_5039#0      GCCAAGAACTGGGCGCCACAGGCGGAGGTGGTGCAACACGAGGCGGTCGGCGTGTTCGTC 984
consensus_5039#1      GTCAAGAACTGGGCGCCACAGGCGGAGGTGGTGCGGCACGAGGCGGCCGGCGCGTTCGTG 789
                      * ********************************  ********** ***** ****** 

consensus_5039#0      ACGCACTGCGGGTGGAACTCGACGCTGGAGGCGATCATGTCGGCGCTGCCGATGATATGC 1044
consensus_5039#1      ACGCACTGCGGGTGGAACTCGACGCTGGAGGCGATCATGTCGGCGCTGCCGATGATTTGC 849
                      ******************************************************** ***

consensus_5039#0      TGGCCGCTGTACGCGGAGCAGGCGATGAACAAGGTGATCATGGTGGAGGAGATGAAGATC 1104
consensus_5039#1      TGGCCGCTTTACACGGAGCAGGCGATGAACAGGGTGCTCATGGTGGAGGAGATGAAGGTC 909
                      ******** *** ****************** **** ******************** **

consensus_5039#0      GCCGTGCCGCTCGACGGCTACGAGGAAGGAGG---------GTTGGTGAAGGCCGAGGAA 1155
consensus_5039#1      GCCGTGGCGCTCGACGGCGGCGAGGTGGGTGGCGCGTTGGTGGCGGTGGCGGCGGAGGAG 969
                      ****** ***********  *****  ** **         *  ****  *** ***** 

consensus_5039#0      GTGGAGGCGAAGGTGAGGCTGGTGATGGAGACCGAGGAAGGGAGGAAGCTCAGGGAGAAG 1215
consensus_5039#1      GTGGAGGCGAAGGTGAGGCTGGTGATGGAGACCGAGGAAGGGAGGAAGCTCAGGGAGAGG 1029
                      ********************************************************** *

consensus_5039#0      CTGGTGGAGACGAGGGACATGGCGTTGGATGCCGTCAAGGAAGGTGGGTCTTCTGAAGTG 1275
consensus_5039#1      GTGGTGGAGACGAGAGACATGGCGCTGGATGCCATCAACGGAGGTGGGTCTTCTGAGATT 1089
                       ************* ********* ******** **** * ***************  * 

consensus_5039#0      GCATTTGATGAGTTCATGAGAGATTTGGAGAAGA---GCAGCTTGGAGAATGGCGT---- 1328
consensus_5039#1      GCATTTGATGAGTTCATGAGGGATTTGGAGAAGATGAACAGCTTGGAGAACGGAGGAGGA 1149
                      ******************** *************    ************ ** *     

consensus_5039#0      --TTGTAGCTGATCAAGCAGAGTTACGCTCATGACCGAATAGAAATGGTGATGGTTTCTT 1386
consensus_5039#1      CGCAGCTGCTGATCAAGCAGGATTTCAC-CATGAC---ACGAGAACTATTATTGATCATA 1205
                          *  *************  ** * * ******   *    **   * ** * *  * 

consensus_5039#0      GATTCCATTTTTTTTTTTAAGGTTGGCGTAACTGAGGACTCTGC----ATAACTGTATTG 1442
consensus_5039#1      GAAAATATTGATCCATTAAAAACAGTTGTGGCATGGTGTTCTTTTACAGTAAAAGCAGTT 1265
                      **    ***  *   ** **    *  **  *   *   ***       ***  * * * 

consensus_5039#0      GTGCATCAATGCGTAGCTGATG----GGTGGGG-GCTAACAGAAA-------GGAAAAAT 1490
consensus_5039#1      GTCTTTCGGAGTTAAGCAGGTGTTTTGGCGAGGCGTTTGTAAACCCCTTGTTGGCCTAGT 1325
                      **   **   *   *** * **    ** * ** * *   * *         **   * *

consensus_5039#0      TTCAAA-AACCACCCCAAATATCACTCTAAGTT-TAAGATGCCCCCCTATAAGAAGATTT 1548
consensus_5039#1      GGCAATTGGTCACGCTTAGCGGTGGTCGGCTTGGTAATAGTGTCTTCTCCAGGGTATTGT 1385
                        ***     *** *  *       **    *  *** *    *  **  * *    * *

consensus_5039#0      GTTGCAAATTCCCACCTCCTAAT-TCACCTT----------------------------- 1578
consensus_5039#1      GTGAGGAGTTGCCAACTCGTGGTGTCGGTATGTTTGTTTTTGTTTCTCCTAGTTACAATC 1445
                      **    * ** *** *** *  * **    *                             

consensus_5039#0      ------------------------------------------------------------
consensus_5039#1      TTTCCAGGGTTGTGATATTGTTTTTTTTTTTCTGCTATCAATATAAACTCCGTACTGTCT 1505
                                                                                  

consensus_5039#0      ---------------------
consensus_5039#1      TATNNAANANNNNNNANNAAA 1526
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)