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Oryza sativa
cluster # 5043 cluster # 5043       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5043#0 length = 1576 sequences # 3  

consensusID : consensus_5043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1576
fasta sequence
                              [GAGGTTGCCGTGTCGGGCGCGCGCGGGTGATTGATTTCGCCGGCGGCGAGGGGAGGGAGGGAGGCAAAAGAGATGGACCGGGCGGCGCTGACGGTGGGGCCGGGGATGGACATGCCGATAATGCACGACGGCGACCGGTACGAGCTGGTGCGGGACATCGGCTCCGGCAACTTCGGCGTCGCGCGCCTCATGCGCAGCCGCGCCGACGGCCAGCTCGTCGCCGTCAAGTACATCGAGCGCGGCGACAAGATCGACGAGAACGTGCAGCGGGAGATCATCAACCACCGCTCGCTGCGCCACCCCAACATCATCCGCTTCAAGGAGGTCATCCTCACCCCCACCCACCTCGCCATCGTCATGGAGTACGCCTCCGGCGGCGAGCTCTTCGAGCGCACCTGCAACGCCGGCAGGTTCAGCGAGGACGAGGCACGGTTCTTTTTCCAGCAACTGATTTCAGGAGTCAGCTATTGCCATTCCATGCAAGTATGCCATCGTGACCTGAAGCTGGAGAACACCCTGCTCGACGGCAGCACGGCGCCTCGCCTCAAGATATGCGACTTTGGCTATTCAAAGTCGTCTGTTCTTCATTCGCAACCAAAATCTACTGTTGGAACTCCGGCATACATCGCTCCTGAGGTTCTGCTGAAGAAGGAATATGATGGAAAGATTGCTGATGTGTGGTCGTGTGGAGTAACCCTCTACGTAATGCTGGTTGGTGCATATCCTTTTGAGGATCCAGATGAGCCTAAGAATTTCAGGAAGACAATTCAGAGAATATTGGGTGTGCAGTACTCTATTCCAGATTATGTCCACATATCTCCAGAGTGCCGAGATCTTATTGCGAGGATTTTTGTGGCCAACCCAGCCACTAGAATCTCTATCCCCGAGATCAGAAATCATCCATGGTTCTTGAAGAATCTCCCAGCTGACCTTATGGATGATAGCAAGATGAGCAGCCAGTACGAGGAGCCCGAACAGCCAATGCAGAGCATGGATGAGATCATGCAGATACTGGCAGAGGCGACCATACCAGCAGCTGGGTCTGGTGGAATCAACCAGTTCTTGAATGATGGCCTTGACCTCGATGATGACATGGAGGGCCTTGATTCAGACCCCGATCTTGACGTGGAAAGCGGTGGGGAGATAGTATACGCTATGTGATGCTGTGAATTCTAGCAAGCAGACAGGCAGATTGCTTGTCAGTTGCCCGCGAATTGGTTTGTTGTATTACAGTCACAGATGACAAAGGTGGCCAAGAAACTGGGAAGTGGATACATGTGTCAAGAGTACATCACAAAAAAGTTCGGTTGCCTATGCTGTTTATTATGCCTGATGATCCCTGTTGTCTCCTGTTTTGTCGCCGTTGATTTGTGTATTGGAGTGTCCTAGATCTCGTTTTGAGAACTGTTTGGAACCTTGTCTTTGCTCCCCTTAACTGAGGGAAAGCGATGTAGTGGTAGTAGTAGTAGTAGTAGCAGCGTGAAGACTGAATAAGAGATGCCCCCAGTAAGCTCAGTACACGAACTTGTTTCCATTTTCAAAGCACCATCTGCACTGCACGTCATTAATTTTATTT]

[+] EMBL AK100538             [GAGGTTGCCGTGTCGGGCGCGCGCGGGTGATTGATTTCGCCGGCGGCGAGGGGAGGGAGGGAGGCAAAAGAGATGGACCGGGCGGCGCTGACGGTGGGGCCGGGGATGGACATGCCGATAATGCACGACGGCGACCGGTACGAGCTGGTGCGGGACATCGGCTCCGGCAACTTCGGCGTCGCGCGCCTCATGCGCAGCCGCGCCGACGGCCAGCTCGTCGCCGTCAAGTACATCGAGCGCGGCGACAAGATCGACGAGAACGTGCAGCGGGAGATCATCAACCACCGCTCGCTGCGCCACCCCAACATCATCCGCTTCAAGGAGGTCATCCTCACCCCCACCCACCTCGCCATCGTCATGGAGTACGCCTCCGGCGGCGAGCTCTTCGAGCGCACCTGCAACGCCGGCAGGTTCAGCGAGGACGAGGCACGGTTCTTTTTCCAGCAACTGATTTCAGGAGTCAGCTATTGCCATTCCATGCAAGTATGCCATCGTGACCTGAAGCTGGAGAACACCCTGCTCGACGGCAGCACGGCGCCTCGCCTCAAGATATGCGACTTTGGCTATTCAAAGTCGTCTGTTCTTCATTCGCAACCAAAATCTACTGTTGGAACTCCGGCATACATCGCTCCTGAGGTTCTGCTGAAGAAGGAATATGATGGAAAGATTGCTGATGTGTGGTCGTGTGGAGTAACCCTCTACGTAATGCTGGTTGGTGCATATCCTTTTGAGGATCCAGATGAGCCTAAGAATTTCAGGAAGACAATTCAGAGAATATTGGGTGTGCAGTACTCTATTCCAGATTATGTCCACATATCTCCAGAGTGCCGAGATCTTATTGCGAGGATTTTTGTGGCCAACCCAGCCACTAGAATCTCTATCCCCGAGATCAGAAATCATCCATGGTTCTTGAAGAATCTCCCAGCTGACCTTATGGATGATAGCAAGATGAGCAGCCAGTACGAGGAGCCCGAACAGCCAATGCAGAGCATGGATGAGATCATGCAGATACTGGCAGAGGCGACCATACCAGCAGCTGGGTCTGGTGGAATCAACCAGTTCTTGAATGATGGCCTTGACCTCGATGATGACATGGAGGACCTTGATTCAGACCCCGATCTTGACGTGGAAAGCAGTGGGGAGATAGTATACGCTATGTGATGCTGTGAATTCTAGCAAGCAGACAGGCAGATTGCTTGTCAGTTGCCCGCGAATTGGTTTGTTGTATTACAGTCACAGATGACAAAGATGGCCAAGAAACTGGGAAGTGGATACATGTGTCAAGAGTACATCACAAAAAAGTTCGGTTGCCTATGCTGTTTATTATGCCTGATGATCCCTGTTGTCTCCTGTTTTGTCGCCGTTGATTTGTGTATTGGAGTGTCCTAGATCTCGTTTTGAGAACTGTTTGGAACCTTGTCTTTGCTCCCCTTAACTGAGGGAAAGCGATGTAGTGGTAGTAGTAGTAGTAGTAGCAGCGTGAAGACTGAATAAGAGATGCCCCCAGTAAGCTCAGTACACGAACTTGTTTCCATTTTCAAAGCACCATCTGCACTGCACGTCATTAATTTTATTT]
[+] EMBL CA882886             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCGAACAGCCAATGCAGAGCATGGATGAGATCATGCAGATACTGGCAGAGGCGACCATACCAGCAGCTGGGTCTGGTGGAATCAACCAGTTCTTGAATGATGGCCTTGACCTCGATGATGACATGGAGGGCCTTGATTCAGACCCCGATCTTGACGTGGAAAGCGGTGGGGAGATAGTATACGCTATGTGATGCTGTGAATTCTAGCAAGCAGACAGGCAGATTGCTTGTCAGTTGCCCGCGAATTGGTTTGTTGTATTACAGTCACAGATGACAAAGGTGGCCAAGAAACTGGGAAGTGGATACATG                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA882812             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCGAACAGCCAATGCAGAGCATGGATGAGATCATGCAGATACTGGCAGAGGCGACCATACCAGCAGCTGGGTCTGGTGGAATCAACCAGTTCTTGAATGATGGCCTTGACCTCGATGATGACATGGAGGGCCTTGATTCAGACCCCGATCTTGACGTGGAAAGCGGTGGGGAGATAGTATACGCTATGTGATGCTGTGAATTCTAGCAAGCAGACAGGCAGATTGCTTGTCAGTTGCCCGCGAATTGGTTTGTTGTATTACAGTCACAGATGACAAAGGTGGCCAAGAAACTGGGAAGTGGATACATG                                                                                                                                                                                                                                                                                                          ]


>consensus_5043#0 GAGGTTGCCGTGTCGGGCGCGCGCGGGTGATTGATTTCGCCGGCGGCGAGGGGAGGGAGG GAGGCAAAAGAGATGGACCGGGCGGCGCTGACGGTGGGGCCGGGGATGGACATGCCGATA ATGCACGACGGCGACCGGTACGAGCTGGTGCGGGACATCGGCTCCGGCAACTTCGGCGTC GCGCGCCTCATGCGCAGCCGCGCCGACGGCCAGCTCGTCGCCGTCAAGTACATCGAGCGC GGCGACAAGATCGACGAGAACGTGCAGCGGGAGATCATCAACCACCGCTCGCTGCGCCAC CCCAACATCATCCGCTTCAAGGAGGTCATCCTCACCCCCACCCACCTCGCCATCGTCATG GAGTACGCCTCCGGCGGCGAGCTCTTCGAGCGCACCTGCAACGCCGGCAGGTTCAGCGAG GACGAGGCACGGTTCTTTTTCCAGCAACTGATTTCAGGAGTCAGCTATTGCCATTCCATG CAAGTATGCCATCGTGACCTGAAGCTGGAGAACACCCTGCTCGACGGCAGCACGGCGCCT CGCCTCAAGATATGCGACTTTGGCTATTCAAAGTCGTCTGTTCTTCATTCGCAACCAAAA TCTACTGTTGGAACTCCGGCATACATCGCTCCTGAGGTTCTGCTGAAGAAGGAATATGAT GGAAAGATTGCTGATGTGTGGTCGTGTGGAGTAACCCTCTACGTAATGCTGGTTGGTGCA TATCCTTTTGAGGATCCAGATGAGCCTAAGAATTTCAGGAAGACAATTCAGAGAATATTG GGTGTGCAGTACTCTATTCCAGATTATGTCCACATATCTCCAGAGTGCCGAGATCTTATT GCGAGGATTTTTGTGGCCAACCCAGCCACTAGAATCTCTATCCCCGAGATCAGAAATCAT CCATGGTTCTTGAAGAATCTCCCAGCTGACCTTATGGATGATAGCAAGATGAGCAGCCAG TACGAGGAGCCCGAACAGCCAATGCAGAGCATGGATGAGATCATGCAGATACTGGCAGAG GCGACCATACCAGCAGCTGGGTCTGGTGGAATCAACCAGTTCTTGAATGATGGCCTTGAC CTCGATGATGACATGGAGGGCCTTGATTCAGACCCCGATCTTGACGTGGAAAGCGGTGGG GAGATAGTATACGCTATGTGATGCTGTGAATTCTAGCAAGCAGACAGGCAGATTGCTTGT CAGTTGCCCGCGAATTGGTTTGTTGTATTACAGTCACAGATGACAAAGGTGGCCAAGAAA CTGGGAAGTGGATACATGTGTCAAGAGTACATCACAAAAAAGTTCGGTTGCCTATGCTGT TTATTATGCCTGATGATCCCTGTTGTCTCCTGTTTTGTCGCCGTTGATTTGTGTATTGGA GTGTCCTAGATCTCGTTTTGAGAACTGTTTGGAACCTTGTCTTTGCTCCCCTTAACTGAG GGAAAGCGATGTAGTGGTAGTAGTAGTAGTAGTAGCAGCGTGAAGACTGAATAAGAGATG CCCCCAGTAAGCTCAGTACACGAACTTGTTTCCATTTTCAAAGCACCATCTGCACTGCAC GTCATTAATTTTATTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)