These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1712 fasta sequence [CCACCCAAATCCTTTCCTCCTCCGCCATCCCAATTCCATTCCATTCCACCACCCCCAAAAAAATCTCCACCCGCCGCCGCCTCCGGCGACACCGCCACCGCCCACCGGAGAGATGTTGCTGGTGAGCCAGGCCGCCAATGGTTCCGTCTCCGCGCGGCGGCTGCCCTCCAAGCAGCCCCTCCGGATCCCCCGCCACCACCACCGCCACCGAGGACCCCGTCCTCGTCGGCGTTACGGACGAGGGCGTCCCCCTCGAGGGCGTCATCCAGTTCGATAAGCCCGGCGACGCCGCCGCCGAGTCCAAGCTCGTCTCCTACGCGAAGCTGGGGCTTCTGGCCAGCGGCGATGTGCTCTGCCTCCTCGTCTTCTCCGCGATAGGAAGGTTCAGCCATGGGCTGCCTGTTCTTGACGCGGAGACGTTCAAGACGGCCGATCCCTTCATTGCTGGATGGTTGCTCAGTGCCTATCTCCTTGGCGGATTCGGGGATGATGCGAAAGGTCGCAATGGCGTGGGGAACGCTGTAGTTGTTGCGGCCAAATCCTGGGCTGTTGGGATACCGTTGGGCCTCGCCATTCGAGCACTGTCATCTGGTCATATTCCACCAACTCCTTTTATCCTGGTAGCCATGGGAAGTACTTGGGTTTTGTTGACTGGATGGCGTGCCCTGGTTTCTCTACTATTTTCCACTGGACAGAGCCAGCAAGATGATGTCTACAGGCGGGGAAGTCCTTTTGAGCTTTTTGAGGTTAAGAAAGTTCTTCAAATTATTGGCATATTTTTTTACACCTGCAACTAGTTTGCTGAAGAGTGATGTTCTGGGCCTATACTTTTGTTGTCACGTAAATGGTTCCATTTGGAGCAACTAGTAAAGAATGCATACAACCACATCTAACCATTTAAACTTTTGCGCCTTATTACCTGATGATACCATGCTACTCACGATGATTAGAAACTCTACATTTTATTGACTAACCCTATAGAGTGTCATCTAACAGCCACCGAACAATACTATCAATCCTCACACATCAGTATAACTGCAAAAATGATGAAATCAAACAATTATTTGAAATTTTTCAATGAGCATGGATCTTATGTTTCTTTATATATATTGGGAGTTTGCTTTGGTCATAAGTTGGCTACTTGCCTGAATATATCTTGGGAGTTTGCTTTCTGAATATATCTCACTGTAACCAATTTGTAAGTTGTAACATCATGGCTCCAAACTCATCATGCATGACTGGAGGAGCTCATTGAGGTAGCCAGAATTCGTAAGTTAATAAAATGGTGAGAGCTGAACTGTTGCATTTTTTTTAAAAAAAAATCTGAAAGTGATCATGTGATAAGGTTTCTTGGTTTCTGTCGAAAGCCATTTTTTCCTTGCATTCTTACTGATAATTGTTTACTCAAGAAACTGCTTGCAAGAAGCGCTAACTGCTTCTATTGTTTTGACAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGTGTAAAGGTGATGATTGCCATCCAACACTAGGTTCTAATTTCTATCGTGTAAGTACAATTTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTGTAACAAGATGGCACAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAATCCATCACTGACATCTCTTTCTTGTGTAGCATGGCCCAATCAT] [+] EMBL AK107548 [CCACCCAAATCCTTTCCTCCTCCGCCATCCCAATTCCATTCCATTCCACCACCCCCAAAAAAATCTCCACCCGCCGCCGCCTCCGGCGACACCGCCACCGCCCACCGGAGAGATGTTGCTGGTGAGCCAGGCCGCCAATGGTTCCGTCTCCGCGCGGCGGCTGCCCTCCAAGCAGCCCCTCCGGATCCCCCGCCACCACCACCGCCACCGAGGACCCCGTCCTCGTCGGCGTTACGGACGAGGGCGTCCCCCTCGAGGGCGTCATCCAGTTCGATAAGCCCGGCGACGCCGCCGCCGAGTCCAAGCTCGTCTCCTACGCGAAGCTGGGGCTTCTGGCCAGCGGCGATGTGCTCTGCCTCCTCGTCTTCTCCGCGATAGGAAGGTTCAGCCATGGGCTGCCTGTTCTTGACGCGGAGACGTTCAAGACGGCCGATCCCTTCATTGCTGGATGGTTGCTCAGTGCCTATCTCCTTGGCGGATTCGGGGATGATGCGAAAGGTCGCAATGGCGTGGGGAACGCTGTAGTTGTTGCGGCCAAATCCTGGGCTGTTGGGATACCGTTGGGCCTCGCCATTCGAGCACTGTCATCTGGTCATATTCCACCAACTCCTTTTATCCTGGTAGCCATGGGAAGTACTTGGGTTTTGTTGACTGGATGGCGTGCCCTGGTTTCTCTACTATTTTCCACTGGACAGAGCCAGCAAGATGATGTCTACAGGCGGGGAAGTCCTTTTGAGCTTTTTGAGGTTAAGAAAGTTCTTCAAATTATTGGCATATTTTTTTACACCTGCAACTAGTTTGCTGAAGAGTGATGTTCTGGGCCTATACTTTTGTTGTCACGTAAATGGTTCCATTTGGAGCAACTAGTAAAGAATGCATACAACCACATCTAACCATTTAAACTTTTGCGCCTTATTACCTGATGATACCATGCTACTCACGATGATTAGAAACTCTACATTTTATTGACTAACCCTATAGAGTGTCATCTAACAGCCACCGAACAATACTATCAATCCTCACACATCAGTATAACTGCAAAAATGATGAAATCAAACAATTATTTGAAATTTTTCAATGAGCATGGATCTTATGTTTCTTTATATATATTGGGAGTTTGCTTTGGTCATAAGTTGGCTACTTGCCTGAATATATCTTGGGAGTTTGCTTTCTGAATATATCTCACTGTAACCAATTTGTAAGTTGTAACATCATGGCTCCAAACTCATCATGCATGACTGGAGGAGCTCATTGAGGTAGCCAGAATTCGTAAGTTAATAAAATGGTGAGAGCTGAACTGTTGCATTTTTTTTAAAAAAAAATCTGAAAGTGATCATGTGATAAGGTTTCTTGGTTTCTGTCGAAAGCCATTTTTTCCTTGCATTCTTACTGATAATTGTTTACTCAAGAAACTGCTTGCAAGAAGCGCTAACTGCTTCTATTGTTTTGACAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGTGTAAAGGTGATGATTGCCATCCAACACTAGGTTCTAATTTCTATCGTGTAAGTACAATTTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTGTAACAAGATGGCACAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAATCCATCACTGACATCTCTTTCTTGTGTAGCATGGCCCAATCAT] consensusID : consensus_5045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 483 fasta sequence [TGTTTGGGGATACCGTTGGGCCCTCGCCATTCGAGCANGCNTGTCATCTGGTCAGTATGTCCACCCAACTCCTTTTATCCTGGTAGCCACTGGGAAGTACTTGGGTTTTGTTGACTGGATGGCGTGCCCCTGGTTTCTCTACTATTTTCCCCTGGACCAGAGCCAGCAAGATGATGTCTACACGGCCGGGGAAGTCCTTTTGAGCTTTTTGAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGTGTAAAGGTGATGATTGCCATCCNACACCTAGGCTTCTAATTTCTATCGTGTAAGTAC-ATTTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTGTAACACAGATGGCACCAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAACCCCTC-CTGACATCTCTTTCTTGTGTAAAAAGGCCCAATCATTTTGATTAC] [+] EMBL BM421685 [TGTTTGGGGATACCGTTGGGCCCTCGCCATTCGAGCANGCNTGTCATCTGGTCAGTATGTCCACCCAACTCCTTTTATCCTGGTAGCCACTGGGAAGTACTTGGGTTTTGTTGACTGGATGGCGTGCCCCTGGTTTCTCTACTATTTTCCCCTGGACCAGAGCCAGCAAGATGATGTCTACACGGCCGGGGAAGTCCTTTTGAGCTTTTTGAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGTGTAAAGGTGATGATTGCCATCCNACACCTAGGCTTCTAATTTCTATCGTGTAAGTAC ATTTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTGTAACACAGATGGCACCAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAACCCCTC CTGACATCTCTTTCTTGTGTAAAAA ] [+] EMBL CB685177 [ nacTGTCATCTGGTCA TAT TCCA CCAACTCCTTTTATCCTGGTAGCCA TGGGAAGTACTTGGGTTTTGTTGACTGGATGGCGTG CCCTGGTTTCTCTACTATTTTCCACTGGA CAGAGCCAGCAAGATGATGTCTACA GG CGGGGAAGTCCTTTTGAGCTTTTTGAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGTGTAAAGGTGATGATTGCCATCCAACA CTAGG TTCTAATTTCTATCGCGTAAGTACAATTTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTGTAACA AGATGGCA CAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAATCCATCACTGACATCTCTTTCTTGTGTAGCATGGCCCAATCATTTTGATTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5045#0 CCACCCAAATCCTTTCCTCCTCCGCCATCCCAATTCCATTCCATTCCACCACCCCCAAAA 60 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 AAATCTCCACCCGCCGCCGCCTCCGGCGACACCGCCACCGCCCACCGGAGAGATGTTGCT 120 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 GGTGAGCCAGGCCGCCAATGGTTCCGTCTCCGCGCGGCGGCTGCCCTCCAAGCAGCCCCT 180 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 CCGGATCCCCCGCCACCACCACCGCCACCGAGGACCCCGTCCTCGTCGGCGTTACGGACG 240 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 AGGGCGTCCCCCTCGAGGGCGTCATCCAGTTCGATAAGCCCGGCGACGCCGCCGCCGAGT 300 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 CCAAGCTCGTCTCCTACGCGAAGCTGGGGCTTCTGGCCAGCGGCGATGTGCTCTGCCTCC 360 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TCGTCTTCTCCGCGATAGGAAGGTTCAGCCATGGGCTGCCTGTTCTTGACGCGGAGACGT 420 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TCAAGACGGCCGATCCCTTCATTGCTGGATGGTTGCTCAGTGCCTATCTCCTTGGCGGAT 480 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TCGGGGATGATGCGAAAGGTCGCAATGGCGTGGGGAACGCTGTAGTTGTTGCGGCCAAAT 540 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 CCTGGGCTGTTGGGATACCGTTGGGCCTCGCCATTCGAGCACTGTCATCTGGTCATATTC 600 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 CACCAACTCCTTTTATCCTGGTAGCCATGGGAAGTACTTGGGTTTTGTTGACTGGATGGC 660 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 GTGCCCTGGTTTCTCTACTATTTTCCACTGGACAGAGCCAGCAAGATGATGTCTACAGGC 720 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 GGGGAAGTCCTTTTGAGCTTTTTGAGGTTAAGAAAGTTCTTCAAATTATTGGCATATTTT 780 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TTTACACCTGCAACTAGTTTGCTGAAGAGTGATGTTCTGGGCCTATACTTTTGTTGTCAC 840 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 GTAAATGGTTCCATTTGGAGCAACTAGTAAAGAATGCATACAACCACATCTAACCATTTA 900 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 AACTTTTGCGCCTTATTACCTGATGATACCATGCTACTCACGATGATTAGAAACTCTACA 960 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 TTTTATTGACTAACCCTATAGAGTGTCATCTAACAGCCACCGAACAATACTATCAATCCT 1020 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 CACACATCAGTATAACTGCAAAAATGATGAAATCAAACAATTATTTGAAATTTTTCAATG 1080 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 AGCATGGATCTTATGTTTCTTTATATATATTGGGAGTTTGCTTTGGTCATAAGTTGGCTA 1140 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 CTTGCCTGAATATATCTTGGGAGTTTGCTTTCTGAATATATCTCACTGTAACCAATTTGT 1200 consensus_5045#1 ------------------------------------------------------------ consensus_5045#0 AAGTTGTAACATCATGGCTCCAAACTCATCATGCATGACTGGAGGAGCTCATTGAGGTAG 1260 consensus_5045#1 -----------------------------------TGTTTGG-GGATACCGTTG-GGCCC 23 ** *** *** * *** ** consensus_5045#0 CCAGAATTCG--TAAGTTAATAAAATGGTGAGA--GCTGAACTGTTGCATTTTTTTTAAA 1316 consensus_5045#1 TCGCCATTCGAGCANGCNTGTCATCTGGTCAGTATGTCCACCCAACTCCTTTTATCCTGG 83 * ***** * * * * **** ** * * * * **** * consensus_5045#0 AAAAAATCTGAAAGTGATCATGTGATAAGGTTTCTTGGTTTCTGTCGAAAGCCATTTTTT 1376 consensus_5045#1 TAGCCACTGGGAAGTACTTGGGTTTT---GTTGACTGG---ATGGCGTGCCCCTGGTTTC 137 * * * **** * ** * *** *** ** ** ** *** consensus_5045#0 CCTTGCATTCTTACTGATAATTGTTTACTCAAGAAACTGCTTGCAAGAAGCGCTAACTGC 1436 consensus_5045#1 TCTACTATTTTCCCCTGGACCAGAGCCAGCAAGATGATGTCTACACGGCCGGGGAAGTCC 197 ** *** * * * * ***** ** * ** * * ** * * consensus_5045#0 TTCTATTGTTTTGACAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGT 1496 consensus_5045#1 TTTTGA-GCTTTTTGAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGT 256 ** * * *** ********************************************* consensus_5045#0 GTAAAGGTGATGATTGCCATCCAACAC-TAGG-TTCTAATTTCTATCGTGTAAGTACAAT 1554 consensus_5045#1 GTAAAGGTGATGATTGCCATCCNACACCTAGGCTTCTAATTTCTATCGTGTAAGTACA-T 315 ********************** **** **** ************************* * consensus_5045#0 TTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTG 1614 consensus_5045#1 TTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAATCGCTTTCTG 375 ************************************************************ consensus_5045#0 TAACA-AGATGGCAC-AAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAATCC 1672 consensus_5045#1 TAACACAGATGGCACCAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAACCC 435 ***** ********* ***************************************** ** consensus_5045#0 ATCACTGACATCTCTTTCTTGTGTAGCATGGCCCAATCAT--------- 1712 consensus_5045#1 CTC-CTGACATCTCTTTCTTGTGTAAAAAGGCCCAATCATTTTGATTAC 483 ** ********************* * *********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||