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Oryza sativa
cluster # 5046 cluster # 5046       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5046#0 length = 1418 sequences # 3  

consensusID : consensus_5046#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1418
fasta sequence
                              [CTTCCAGAAGGAAATTTAAATAATGATGCAGCCTTATCTAGTGAAAAGACGGGGAATGTGGGTCCTTGCAGTAGCATTGCACATCGTAATGAAAAGCCCCCTGATGAACTACAGAGCAGTGGACTGCCTGCTAACAGTAAGACTGGAACCCAATCAGGGAAATCTCCTAATGAAGAAGTGTCCAGTGTATTAGTTTCAGGCAGTGCGGATTCAACAAATGATACCTTGCATGAGCAGAAATCTCATGAAATTTCTGGGGAAAAATGCTCAGACAACTCTTCTATTGTTGCTTCTGAAGCAAATATCAAGTCAAAAGCAGACTCTGAGCTCATTTCGGGCAGAGATGTGGAAATGGTTGATAATGATATACCACCAAAGGATCAAACCAACAACATTGCCACTGAGGACAAACCCAGTACTCAAGAAACCTCTGAAGCACATAAAATGGTAGTTGTGGAGGTGAGCGCCAATACTGGAATACAAATAAGCCAGGGTGACA-GTGCTGGCACTGAAGAGAATCTCCACACTGAAGTAACTTCTGTTCCACACATGATCAATGATGTGGCAATGGCTACCAATGCTGGAACACCAATATGTCCAAGCAACAACGTTGCCATTGAAGAAAAGCCCAAGTCTACTGTAATTTCCGAGGTATGTACAACCAAAGATACGGAAATGACTACTGATGCCACTTTAGATCAAAACACCAATGTTGCTACAGAAGAAATTCCTTTGCCTGAATCAATTTCTGCAACTGAGGATGCTGACATGACTACTGATACTGGAATACCAACAAATCAAAGACAGGAAGTAAATGGATTGGCTGAAAATGGCAGAAAAGAACATCCCCTGGGAGAAACAGATAAACACAAATCTGACCATAGTACGATGCCTGATATGTCTACAGCCCCACAGATAACATCAAATGGAGTTATGCATTCAAAAGATGAAGCTGCATGTGGCCATGAAGGTGAAATTGTGGACATCAGTGCAGCAGCAACAGAGGAAAACAATTAGATTCAGATATAGTAGATTGCATCCAATTCCATTTGCAGACGCGATCGTGATGAAGCCACCTGTAGTTCGGTTAGTGCCTAGCGTAGCTTCAGTGATTAACCATGCTGTCAACATTCTTTTGGACCAGTCACCATAAGTTCATCATGTGCTGCCGGCCATTTCCCATGAGTGCCTACTTCCTACTGGACTTGCTGGAATCAATGTAGCGCGCATGAAGGATGTTGTTACCTTACCGTAGTTCCTTCGGCTATCACTCCTAGCTATATTTAGTTTCTTTACCTGTCTTGTCTTCCTCTGCGCTGATCTTATAAAGGCTGTAATTACATAGGATTTGGTTGAGTGACTCATAGGTTCTGTCGTAATGATATGATTTTTTCCCGTAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK108806             [CTTCCAGAAGGAAATTTAAATAATGATGCAGCCTTATCTAGTGAAAAGACGGGGAATGTGGGTCCTTGCAGTAGCATTGCACATCGTAATGAAAAGCCCCCTGATGAACTACAGAGCAGTGGACTGCCTGCTAACAGTAAGACTGGAACCCAATCAGGGAAATCTCCTAATGAAGAAGTGTCCAGTGTATTAGTTTCAGGCAGTGCGGATTCAACAAATGATACCTTGCATGAGCAGAAATCTCATGAAATTTCTGGGGAAAAATGCTCAGACAACTCTTCTATTGTTGCTTCTGAAGCAAATATCAAGTCAAAAGCAGACTCTGAGCTCATTTCGGGCAGAGATGTGGAAATGGTTGATAATGATATACCACCAAAGGATCAAACCAACAACATTGCCACTGAGGACAAACCCAGTACTCAAGAAACCTCTGAAGCACATAAAATGGTAGTTGTGGAGGTGAGCGCCAATACTGGAATACAAATAAGCCAGGGTGACA GTGCTGGCACTGAAGAGAATCTCCACACTGAAGTAACTTCTGTTCCACACATGATCAATGATGTGGCAATGGCTACCAATGCTGGAACACCAATATGTCCAAGCAACAACGTTGCCATTGAAGAAAAGCCCAAGTCTACTGTAATTTCCGAGGTATGTACAACCAAAGATACGGAAATGACTACTGATGCCACTTTAGATCAAAACACCAATGTTGCTACAGAAGAAATTCCTTTGCCTGAATCAATTTCTGCAACTGAGGATGCTGACATGACTACTGATACTGGAATACCAACAAATCAAAGACAGGAAGTAAATGGATTGGCTGAAAATGGCAGAAAAGAACATCCCCTGGGAGAAACAGATAAACACAAATCTGACCATAGTACGATGCCTGATATGTCTACAGCCCCACAGATAACATCAAATGGAGTTATGCATTCAAAAGATGAAGCTGCATGTGGCCATGAAGGTGAAATTGTGGACATCAGTGCAGCAGCAACAGAGGAAAACAATTAGATTCAGATATAGTAGATTGCATCCAATTCCATTTGCAGACGCGATCGTGATGAAGCCACCTGTAGTTCGGTTAGTGCCAAGCGTAGCTTCAGTGATTAACCATGCTGTCAACATTCTTTTGGACCAGTCACCATAAGTTCATCATGTGCTGCCGGCCATTTCCCATGAGTGCTTACTTCCTACTGGACTTGCTGGAATCAATGTAGCGCGCATGAAGGATGTTGTTACCTTACCGTAGTTCCTTCGGCTATCACTCCTAGCTATATTTAGTTTCTTTACCTGTCTTGTCTTCCTCTGCGCTGATCTTATAAAGGCTGTAATTACATAGGATTTGGTTGAGTGACTCATAGGTTCTGTCGTAATGATATGAT                              ]
[+] EMBL CA764990             [                                                                                                                                                                                                                                                                                                                                                                                                                            CCAGTACTCAAGAAACCTCTGAAGCACATAAAATGGAAGTTGTGGAGGTGAGCGCCAATACTGGAATACAAATAAGCCAGGGTGACATGTGCTGGCACTGAAGAGAATCTCCACACTGAAGTAACTTCTGTTCCACACATGATCAATGGTGTGGCAATGGCTACCAATGCTGGAACACCAATATGTCCAAGCAGCAACGTTGCCATTGAAGAAAAGCCCAAGTCTACTGTAATTTCCGAGGTATGTACAACCAAAGATACGGAAATGACTACTGATGCCACTTTAGATCAAAACACCAATGTTGCTACAGAAGAAATTCCTTTGCCTGAATCAATTTCTGCAACTGAGGATGCTGACATGACTACTGATACTGGAATACCAACAAATCAAAGACAGGAAGTAAATGGATTGGCTGAAAATGGCAGAAAAGAACATCCCCTGGGAGAAACAGATAAACACAAATCTGACCATAGTACGATGCCTGATATGTCTACAGCCCCACAGATAACATCAAATGGAGTTATGCATTCAAAAGATGAAGCTGCATGTGGCCATGAAGGTGAAATTGTGGACATCAGTGCAGCAGCAACAGAGGAAAACAATTAGATTCAGATATAGTAGATTGCATCCAATTCCATTTGCAGACGCGATCGTGATGAAGCCACCTGTAGNTCGGTTAGTGCCTANCGTAGCTTCAGTGATTAACCATGCTGTCAACATTCTTTTGGACCAGTCACTATAAGTTCATCATGTGCTGNCGGCCATTTCCCATGAGTGCCTACTTtc                                                                                                                                                                                                                             ]
[+] EMBL AU166866             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGACATCAGTGCAGCAGCAACAGAGGAAAACAATTAGATTCAGATATAGTAGATTGCATCCAATTCCATTTGCAGACGCGATCGTGATGAAGCCNCCTGTAGTTCGGTTAGTGCCTAGCGTAGCTTCAGTGATTAACCATGCTGTCAACATTNTTTTGGACCAGTCNCCATAAGTTCATCATGTGCTGCCGGCCATTTCCCATGAGTGCCTACTTCCTACTGGACTTGCTGGAATCAATGTAGCGCGCATGAAGGATGTTGTTACCTTACCGTAGTTCCTTCGGCTATCACTCCTAGCTATATTTAGTTTCTTTACCTGTCTTGTCTTCCTCTGCGCTGATCTTATAAAGGCTGTAATTACATAGGATTTGGTTGAGTGACTCATAGGTTCTGTCGTAATGATATGATTTTTTCCCGTAAAAAAAAAAAAAAAAAAAA]


>consensus_5046#0 CTTCCAGAAGGAAATTTAAATAATGATGCAGCCTTATCTAGTGAAAAGACGGGGAATGTG GGTCCTTGCAGTAGCATTGCACATCGTAATGAAAAGCCCCCTGATGAACTACAGAGCAGT GGACTGCCTGCTAACAGTAAGACTGGAACCCAATCAGGGAAATCTCCTAATGAAGAAGTG TCCAGTGTATTAGTTTCAGGCAGTGCGGATTCAACAAATGATACCTTGCATGAGCAGAAA TCTCATGAAATTTCTGGGGAAAAATGCTCAGACAACTCTTCTATTGTTGCTTCTGAAGCA AATATCAAGTCAAAAGCAGACTCTGAGCTCATTTCGGGCAGAGATGTGGAAATGGTTGAT AATGATATACCACCAAAGGATCAAACCAACAACATTGCCACTGAGGACAAACCCAGTACT CAAGAAACCTCTGAAGCACATAAAATGGTAGTTGTGGAGGTGAGCGCCAATACTGGAATA CAAATAAGCCAGGGTGACAGTGCTGGCACTGAAGAGAATCTCCACACTGAAGTAACTTCT GTTCCACACATGATCAATGATGTGGCAATGGCTACCAATGCTGGAACACCAATATGTCCA AGCAACAACGTTGCCATTGAAGAAAAGCCCAAGTCTACTGTAATTTCCGAGGTATGTACA ACCAAAGATACGGAAATGACTACTGATGCCACTTTAGATCAAAACACCAATGTTGCTACA GAAGAAATTCCTTTGCCTGAATCAATTTCTGCAACTGAGGATGCTGACATGACTACTGAT ACTGGAATACCAACAAATCAAAGACAGGAAGTAAATGGATTGGCTGAAAATGGCAGAAAA GAACATCCCCTGGGAGAAACAGATAAACACAAATCTGACCATAGTACGATGCCTGATATG TCTACAGCCCCACAGATAACATCAAATGGAGTTATGCATTCAAAAGATGAAGCTGCATGT GGCCATGAAGGTGAAATTGTGGACATCAGTGCAGCAGCAACAGAGGAAAACAATTAGATT CAGATATAGTAGATTGCATCCAATTCCATTTGCAGACGCGATCGTGATGAAGCCACCTGT AGTTCGGTTAGTGCCTAGCGTAGCTTCAGTGATTAACCATGCTGTCAACATTCTTTTGGA CCAGTCACCATAAGTTCATCATGTGCTGCCGGCCATTTCCCATGAGTGCCTACTTCCTAC TGGACTTGCTGGAATCAATGTAGCGCGCATGAAGGATGTTGTTACCTTACCGTAGTTCCT TCGGCTATCACTCCTAGCTATATTTAGTTTCTTTACCTGTCTTGTCTTCCTCTGCGCTGA TCTTATAAAGGCTGTAATTACATAGGATTTGGTTGAGTGACTCATAGGTTCTGTCGTAAT GATATGATTTTTTCCCGTAAAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)