These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1463 fasta sequence [GCGTCAGGCCAAACGCCTCCCCTTCCCGATGCACACTGTAGCTACTTGCAACTTGCGCAAGGAGTATCCCCGAACGCATATTTCCTTTCCTTCGTCTACCTCCAGCAGCATCAGCGGCGGCGGCAGCTGGATCCTCCCTCCCGAGACTGAGAGCACGGCAAGATTTGCAAAATTGCAAGGCGAGTAGTTGCGTGAGACTGAGTTTTTGAGTGAGCGAGTTAGCCATGCTGGTAAGGAGCGCCTCCACGCCGGTTCTCGGCGCGCTCCTCCCGTCCGGGAGCCACTCGCCGGCTGTCTCCTCCCCGGCCGTCCACTTCTTCGCCGACTCGTCGCCGACGGTCTCGTACCACCCGCCGACCATCTCCTGCCGGCTCACGCCAGGCGGCTCCGACGCCCACGACCGCTCCCTCGGTGGCCTGCGCCGCGCTTGCTCCGATGGGAACCTCGCCGCTCTAGGCGCCAGCGGGGACGACGACCACCACCACCACCTCCCGCCGTCCGGCAAGTGCGCGCCGCGCTCCAAGCCAACGACGCTCGAGACGATCCAGTCGTTCACGCAACGCGGCGGCGCTTCCACGGACGAGGAGGAGGAGGAGGACGACGACGACGGCGACCACGAAAGCGCGGAGCAGGAGCTGAGCTTTGGGAAGTTCCGCTTCAGCGGCAGCAGCACGTTCGCGCAGGTCGAGCACCCGCTGTTCCTCGCCAGAGGCCTCGGGATCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGGCGGCAGCGGCGGTTCCGACGGCGGCGGCGGCGGTGGCGCCGGAGGCAGTTACCTGGTGACCTCCGACAACGGAGGGAATCGCTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTTCCTGAGGAACTACGCGCAGTTCCTGTATCAGATTAAAGGGGATAGCCGGAAGGCAGAGGAGTACTACTCCCGTGCCATCCTCGCCGACCCGAACGACGGCGAGCTCCTGTCGGAGTACGCCAAGCTGGTCTGGGACGTGCACCGCGACGAGGACCGCGCCTCCAGCTACTTCGAGCGGGCAGCGAGAGCCTCCCCGCAGAACAGCCACGTTCTCGCCGCGCACGCCGCGTTCTTGTGGGACACGGACGACGGCGACGGGCCGGAGGGTAGCAGCAGCGACGCGCTGGGCTACGCGGGGTTCGCCGCTGCTGCTGCTCACTCGTCCTTGGCTTCGGCAACAACCTGATCTGAACAAACGAACAACCTTCCTGTTGTCTCTGAAACTAGCATGGTGTAGTATTGGTAGTCTCGCGTTCATTTCAGTACTAGCTTCCCAATAATTGGAGCGCTAAATGGCTGGTCCAGTATGTGTGTATACTGCTGTTGTAAATCACCAAGCGGAATCAAGTTTACGACGTATGAATGCTGCAGCACTGATCTGAGCTTCGTGTCACTATAACCTGTT] [+] EMBL AK070000 [GCGTCAGGCCAAACGCCTCCCCTTCCCGATGCACACTGTAGCTACTTGCAACTTGCGCAAGGAGTATCCCCGAACGCATATTTCCTTTCCTTCGTCTACCTCCAGCAGCATCAGCGGCGGCGGCAGCTGGATCCTCCCTCCCGAGACTGAGAGCACGGCAAGATTTGCAAAATTGCAAGGCGAGTAGTTGCGTGAGACTGAGTTTTTGAGTGAGCGAGTTAGCCATGCTGGTAAGGAGCGCCTCCACGCCGGTTCTCGGCGCGCTCCTCCCGTCCGGGAGCCACTCGCCGGCTGTCTCCTCCCCGGCCGTCCACTTCTTCGCCGACTCGTCGCCGACGGTCTCGTACCACCCGCCGACCATCTCCTGCCGGCTCACGCCAGGCGGCTCCGACGCCCACGACCGCTCCCTCGGTGGCCTGCGCCGCGCTTGCTCCGATGGGAACCTCGCCGCTCTAGGCGCCAGCGGGGACGACGACCACCACCACCACCTCCCGCCGTCCGGCAAGTGCGCGCCGCGCTCCAAGCCAACGACGCTCGAGACGATCCAGTCGTTCACGCAACGCGGCGGCGCTTCCACGGACGAGGAGGAGGAGGAGGACGACGACGACGGCGACCACGAAAGCGCGGAGCAGGAGCTGAGCTTTGGGAAGTTCCGCTTCAGCGGCAGCAGCACGTTCGCGCAGGTCGAGCACCCGCTGTTCCTCGCCAGAGGCCTCGGGATCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGGCGGCAGCGGCGGTTCCGACGGCGGCGGCGGCGGTGGCGCCGGAGGCAGTTACCTGGTGACCTCCGACAACGGAGGGAATCGCTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTTCCTGAGGAACTACGCGCAGTTCCTGTATCAGATTAAAGGGGATAGCCGGAAGGCAGAGGAGTACTACTCCCGTGCCATCCTCGCCGACCCGAACGACGGCGAGCTCCTGTCGGAGTACGCCAAGCTGGTCTGGGACGTGCACCGCGACGAGGACCGCGCCTCCAGCTACTTCGAGCGGGCAGCGAGAGCCTCCCCGCAGAACAGCCACGTTCTCGCCGCGCACGCCGCGTTCTTGTGGGACACGGACGACGGCGACGGGCCGGAGGGTAGCAGCAGCGACGCGCTGGGCTACGCGGGGTTCGCCGCTGCTGCTGCTCACTCGTCCTTGGCTTCGGCAACAACCTGATCTGAACAAACGAACAACCTTCCTGTTGTCTCTGAAACTAGCATGGTGTAGTATTGGTAGTCTCGCGTTCATTTCAGTACTAGCTTCCCAATAATTGGAGCGCTAAATGGCTGGTCCAGTATGTGTGTATACTGCTGTTGTAAATCACCAAGCGGAATCAAGTTTACGACGTATGAATGCTGCAGCACTGATCTGAGCTTCGTGTCACTATAACCTGTT] [+] EMBL AU166916 [ TGGGACGTGCACCGCGACGAGGACCGCGCCTCCAGCTACTTCGAGCGGGCAGCGAGAGCCTCCCCGCAGAACAGCCACGTTCTCGCCGCGCACGCCGCGTTCTTGTGGGACACGGACGACGGCGACGGGCCGGAGGGTAGCAGCAGCGACGCGCTGGGCTACGCGGGGTTCGCCGCTGCTGCTGCTCACTCGTCCTTGGCTTCGGCAACAACCTGATCTGAACAAACGAACAACCTTCCTGTTGTCTCTGAAACTAGCATGGTGTAGTATTGGTAGTCTCGCGTTCATTTCAGTACTAGCTTCCCAATAATTGGAGCGCTAAATGGCTGGTCCAGTATGTGTGTATACTGCTGTTGTAAATCACCAAGCGGAATCAAGTTTACGACGTATGAATGCTGCAGCACTGATCTGAGCTTCGTGTCAaaaaaaa ] consensusID : consensus_5055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [CGGCNGGCCTTCCACGGACGAGGAGGAGGAGGAGGACGACGACGACGGCNACCACGAAANCNCGGANAGGNAGCTGAGCTTTGGGAAGTTCCGCTTCANNCAGCAGCACGTTCGCGCAGGTCGAGCACCCNCTGTTCCTCGCCAGAGCCTCGGGATCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGGGCAAGCGGCNGTNTCCGACGGCGGCGGCGGCGGTNGCGCGAAGNAGTTTTACCTGGGTGACCTCCGACAACGGAGNGAATCGCTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTTTCCTNAGGAACTACGCGCAGTTCCTGTATCAGATTAAA] [+] EMBL C27642 [CGGCNGGCCTTCCACGGACGAGGAGGAGGAGGAGGACGACGACGACGGCNACCACGAAANCNCGGANAGGNAGCTGAGCTTTGGGAAGTTCCGCTTCANNCAGCAGCACGTTCGCGCAGGTCGAGCACCCNCTGTTCCTCGCCAGAGCCTCGGGATCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGGGCAAGCGGCNGTNTCCGACGGCGGCGGCGGCGGTNGCGCGAAGNAGTTTTACCTGGGTGACCTCCGACAACGGAGNGAATCGCTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTTTCCTNAGGAACTACGCGCAGTTCCTGTATCAGATTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5055#0 GCGTCAGGCCAAACGCCTCCCCTTCCCGATGCACACTGTAGCTACTTGCAACTTGCGCAA 60 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 GGAGTATCCCCGAACGCATATTTCCTTTCCTTCGTCTACCTCCAGCAGCATCAGCGGCGG 120 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 CGGCAGCTGGATCCTCCCTCCCGAGACTGAGAGCACGGCAAGATTTGCAAAATTGCAAGG 180 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 CGAGTAGTTGCGTGAGACTGAGTTTTTGAGTGAGCGAGTTAGCCATGCTGGTAAGGAGCG 240 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 CCTCCACGCCGGTTCTCGGCGCGCTCCTCCCGTCCGGGAGCCACTCGCCGGCTGTCTCCT 300 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 CCCCGGCCGTCCACTTCTTCGCCGACTCGTCGCCGACGGTCTCGTACCACCCGCCGACCA 360 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 TCTCCTGCCGGCTCACGCCAGGCGGCTCCGACGCCCACGACCGCTCCCTCGGTGGCCTGC 420 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 GCCGCGCTTGCTCCGATGGGAACCTCGCCGCTCTAGGCGCCAGCGGGGACGACGACCACC 480 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 ACCACCACCTCCCGCCGTCCGGCAAGTGCGCGCCGCGCTCCAAGCCAACGACGCTCGAGA 540 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 CGATCCAGTCGTTCACGCAACGCGGCGGCGCTTCCACGGACGAGGAGGAGGAGGAGGACG 600 consensus_5055#1 ----------------------CGGCNGGCCTTCCACGGACGAGGAGGAGGAGGAGGACG 38 **** * ****************************** consensus_5055#0 ACGACGACGGCGACCACGAAAGCGCGGAGCAGGAGCTGAGCTTTGGGAAGTTCCGCTTCA 660 consensus_5055#1 ACGACGACGGCNACCACGAAANCNCGGANAGGNAGCTGAGCTTTGGGAAGTTCCGCTTCA 98 *********** ********* * **** * *************************** consensus_5055#0 GCGGCAGCAGCACGTTCGCGCAGGTCGAGCACCCGCTGTTCCTCGCCAGAGGCCTCGGGA 720 consensus_5055#1 NN--CAGCAGCACGTTCGCGCAGGTCGAGCACCCNCTGTTCCTCGCCAGAG-CCTCGGGA 155 ****************************** **************** ******** consensus_5055#0 TCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGGCGGCAGCGGCGGTT-CCGACGGC 779 consensus_5055#1 TCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGG-GCAAGCGGCNGTNTCCGACGGC 214 ************************************* * ****** ** ******** consensus_5055#0 GGCGGCGGCGGTGGCGCCGGAGGCAGTTACCTGG-TGACCTCCGACAACGGAGGGAATCG 838 consensus_5055#1 GGCGGCGGCGGTNGCGCGAAGNAGTTTTACCTGGGTGACCTCCGACAACGGAGNGAATCG 274 ************ **** ******** ****************** ****** consensus_5055#0 CTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTT 898 consensus_5055#1 CTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTT 334 ************************************************************ consensus_5055#0 -CCTGAGGAACTACGCGCAGTTCCTGTATCAGATTAAAGGGGATAGCCGGAAGGCAGAGG 957 consensus_5055#1 TCCTNAGGAACTACGCGCAGTTCCTGTATCAGATTAAA---------------------- 372 *** ********************************* consensus_5055#0 AGTACTACTCCCGTGCCATCCTCGCCGACCCGAACGACGGCGAGCTCCTGTCGGAGTACG 1017 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 CCAAGCTGGTCTGGGACGTGCACCGCGACGAGGACCGCGCCTCCAGCTACTTCGAGCGGG 1077 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 CAGCGAGAGCCTCCCCGCAGAACAGCCACGTTCTCGCCGCGCACGCCGCGTTCTTGTGGG 1137 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 ACACGGACGACGGCGACGGGCCGGAGGGTAGCAGCAGCGACGCGCTGGGCTACGCGGGGT 1197 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 TCGCCGCTGCTGCTGCTCACTCGTCCTTGGCTTCGGCAACAACCTGATCTGAACAAACGA 1257 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 ACAACCTTCCTGTTGTCTCTGAAACTAGCATGGTGTAGTATTGGTAGTCTCGCGTTCATT 1317 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 TCAGTACTAGCTTCCCAATAATTGGAGCGCTAAATGGCTGGTCCAGTATGTGTGTATACT 1377 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 GCTGTTGTAAATCACCAAGCGGAATCAAGTTTACGACGTATGAATGCTGCAGCACTGATC 1437 consensus_5055#1 ------------------------------------------------------------ consensus_5055#0 TGAGCTTCGTGTCACTATAACCTGTT 1463 consensus_5055#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||