cluster # 5055

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Oryza sativa
cluster # 5055 cluster # 5055 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5055#0 length = 1463 sequences # 2

consensus_5055#1 length = 372 sequences # 1

consensusID : consensus_5055#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1463
fasta sequence

                              [GCGTCAGGCCAAACGCCTCCCCTTCCCGATGCACACTGTAGCTACTTGCAACTTGCGCAAGGAGTATCCCCGAACGCATATTTCCTTTCCTTCGTCTACCTCCAGCAGCATCAGCGGCGGCGGCAGCTGGATCCTCCCTCCCGAGACTGAGAGCACGGCAAGATTTGCAAAATTGCAAGGCGAGTAGTTGCGTGAGACTGAGTTTTTGAGTGAGCGAGTTAGCCATGCTGGTAAGGAGCGCCTCCACGCCGGTTCTCGGCGCGCTCCTCCCGTCCGGGAGCCACTCGCCGGCTGTCTCCTCCCCGGCCGTCCACTTCTTCGCCGACTCGTCGCCGACGGTCTCGTACCACCCGCCGACCATCTCCTGCCGGCTCACGCCAGGCGGCTCCGACGCCCACGACCGCTCCCTCGGTGGCCTGCGCCGCGCTTGCTCCGATGGGAACCTCGCCGCTCTAGGCGCCAGCGGGGACGACGACCACCACCACCACCTCCCGCCGTCCGGCAAGTGCGCGCCGCGCTCCAAGCCAACGACGCTCGAGACGATCCAGTCGTTCACGCAACGCGGCGGCGCTTCCACGGACGAGGAGGAGGAGGAGGACGACGACGACGGCGACCACGAAAGCGCGGAGCAGGAGCTGAGCTTTGGGAAGTTCCGCTTCAGCGGCAGCAGCACGTTCGCGCAGGTCGAGCACCCGCTGTTCCTCGCCAGAGGCCTCGGGATCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGGCGGCAGCGGCGGTTCCGACGGCGGCGGCGGCGGTGGCGCCGGAGGCAGTTACCTGGTGACCTCCGACAACGGAGGGAATCGCTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTTCCTGAGGAACTACGCGCAGTTCCTGTATCAGATTAAAGGGGATAGCCGGAAGGCAGAGGAGTACTACTCCCGTGCCATCCTCGCCGACCCGAACGACGGCGAGCTCCTGTCGGAGTACGCCAAGCTGGTCTGGGACGTGCACCGCGACGAGGACCGCGCCTCCAGCTACTTCGAGCGGGCAGCGAGAGCCTCCCCGCAGAACAGCCACGTTCTCGCCGCGCACGCCGCGTTCTTGTGGGACACGGACGACGGCGACGGGCCGGAGGGTAGCAGCAGCGACGCGCTGGGCTACGCGGGGTTCGCCGCTGCTGCTGCTCACTCGTCCTTGGCTTCGGCAACAACCTGATCTGAACAAACGAACAACCTTCCTGTTGTCTCTGAAACTAGCATGGTGTAGTATTGGTAGTCTCGCGTTCATTTCAGTACTAGCTTCCCAATAATTGGAGCGCTAAATGGCTGGTCCAGTATGTGTGTATACTGCTGTTGTAAATCACCAAGCGGAATCAAGTTTACGACGTATGAATGCTGCAGCACTGATCTGAGCTTCGTGTCACTATAACCTGTT]

[+] EMBL AK070000             [GCGTCAGGCCAAACGCCTCCCCTTCCCGATGCACACTGTAGCTACTTGCAACTTGCGCAAGGAGTATCCCCGAACGCATATTTCCTTTCCTTCGTCTACCTCCAGCAGCATCAGCGGCGGCGGCAGCTGGATCCTCCCTCCCGAGACTGAGAGCACGGCAAGATTTGCAAAATTGCAAGGCGAGTAGTTGCGTGAGACTGAGTTTTTGAGTGAGCGAGTTAGCCATGCTGGTAAGGAGCGCCTCCACGCCGGTTCTCGGCGCGCTCCTCCCGTCCGGGAGCCACTCGCCGGCTGTCTCCTCCCCGGCCGTCCACTTCTTCGCCGACTCGTCGCCGACGGTCTCGTACCACCCGCCGACCATCTCCTGCCGGCTCACGCCAGGCGGCTCCGACGCCCACGACCGCTCCCTCGGTGGCCTGCGCCGCGCTTGCTCCGATGGGAACCTCGCCGCTCTAGGCGCCAGCGGGGACGACGACCACCACCACCACCTCCCGCCGTCCGGCAAGTGCGCGCCGCGCTCCAAGCCAACGACGCTCGAGACGATCCAGTCGTTCACGCAACGCGGCGGCGCTTCCACGGACGAGGAGGAGGAGGAGGACGACGACGACGGCGACCACGAAAGCGCGGAGCAGGAGCTGAGCTTTGGGAAGTTCCGCTTCAGCGGCAGCAGCACGTTCGCGCAGGTCGAGCACCCGCTGTTCCTCGCCAGAGGCCTCGGGATCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGGCGGCAGCGGCGGTTCCGACGGCGGCGGCGGCGGTGGCGCCGGAGGCAGTTACCTGGTGACCTCCGACAACGGAGGGAATCGCTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTTCCTGAGGAACTACGCGCAGTTCCTGTATCAGATTAAAGGGGATAGCCGGAAGGCAGAGGAGTACTACTCCCGTGCCATCCTCGCCGACCCGAACGACGGCGAGCTCCTGTCGGAGTACGCCAAGCTGGTCTGGGACGTGCACCGCGACGAGGACCGCGCCTCCAGCTACTTCGAGCGGGCAGCGAGAGCCTCCCCGCAGAACAGCCACGTTCTCGCCGCGCACGCCGCGTTCTTGTGGGACACGGACGACGGCGACGGGCCGGAGGGTAGCAGCAGCGACGCGCTGGGCTACGCGGGGTTCGCCGCTGCTGCTGCTCACTCGTCCTTGGCTTCGGCAACAACCTGATCTGAACAAACGAACAACCTTCCTGTTGTCTCTGAAACTAGCATGGTGTAGTATTGGTAGTCTCGCGTTCATTTCAGTACTAGCTTCCCAATAATTGGAGCGCTAAATGGCTGGTCCAGTATGTGTGTATACTGCTGTTGTAAATCACCAAGCGGAATCAAGTTTACGACGTATGAATGCTGCAGCACTGATCTGAGCTTCGTGTCACTATAACCTGTT]
[+] EMBL AU166916             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGGGACGTGCACCGCGACGAGGACCGCGCCTCCAGCTACTTCGAGCGGGCAGCGAGAGCCTCCCCGCAGAACAGCCACGTTCTCGCCGCGCACGCCGCGTTCTTGTGGGACACGGACGACGGCGACGGGCCGGAGGGTAGCAGCAGCGACGCGCTGGGCTACGCGGGGTTCGCCGCTGCTGCTGCTCACTCGTCCTTGGCTTCGGCAACAACCTGATCTGAACAAACGAACAACCTTCCTGTTGTCTCTGAAACTAGCATGGTGTAGTATTGGTAGTCTCGCGTTCATTTCAGTACTAGCTTCCCAATAATTGGAGCGCTAAATGGCTGGTCCAGTATGTGTGTATACTGCTGTTGTAAATCACCAAGCGGAATCAAGTTTACGACGTATGAATGCTGCAGCACTGATCTGAGCTTCGTGTCAaaaaaaa     ]




>consensus_5055#0
GCGTCAGGCCAAACGCCTCCCCTTCCCGATGCACACTGTAGCTACTTGCAACTTGCGCAA
GGAGTATCCCCGAACGCATATTTCCTTTCCTTCGTCTACCTCCAGCAGCATCAGCGGCGG
CGGCAGCTGGATCCTCCCTCCCGAGACTGAGAGCACGGCAAGATTTGCAAAATTGCAAGG
CGAGTAGTTGCGTGAGACTGAGTTTTTGAGTGAGCGAGTTAGCCATGCTGGTAAGGAGCG
CCTCCACGCCGGTTCTCGGCGCGCTCCTCCCGTCCGGGAGCCACTCGCCGGCTGTCTCCT
CCCCGGCCGTCCACTTCTTCGCCGACTCGTCGCCGACGGTCTCGTACCACCCGCCGACCA
TCTCCTGCCGGCTCACGCCAGGCGGCTCCGACGCCCACGACCGCTCCCTCGGTGGCCTGC
GCCGCGCTTGCTCCGATGGGAACCTCGCCGCTCTAGGCGCCAGCGGGGACGACGACCACC
ACCACCACCTCCCGCCGTCCGGCAAGTGCGCGCCGCGCTCCAAGCCAACGACGCTCGAGA
CGATCCAGTCGTTCACGCAACGCGGCGGCGCTTCCACGGACGAGGAGGAGGAGGAGGACG
ACGACGACGGCGACCACGAAAGCGCGGAGCAGGAGCTGAGCTTTGGGAAGTTCCGCTTCA
GCGGCAGCAGCACGTTCGCGCAGGTCGAGCACCCGCTGTTCCTCGCCAGAGGCCTCGGGA
TCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGGCGGCAGCGGCGGTTCCGACGGCG
GCGGCGGCGGTGGCGCCGGAGGCAGTTACCTGGTGACCTCCGACAACGGAGGGAATCGCT
CTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTTCC
TGAGGAACTACGCGCAGTTCCTGTATCAGATTAAAGGGGATAGCCGGAAGGCAGAGGAGT
ACTACTCCCGTGCCATCCTCGCCGACCCGAACGACGGCGAGCTCCTGTCGGAGTACGCCA
AGCTGGTCTGGGACGTGCACCGCGACGAGGACCGCGCCTCCAGCTACTTCGAGCGGGCAG
CGAGAGCCTCCCCGCAGAACAGCCACGTTCTCGCCGCGCACGCCGCGTTCTTGTGGGACA
CGGACGACGGCGACGGGCCGGAGGGTAGCAGCAGCGACGCGCTGGGCTACGCGGGGTTCG
CCGCTGCTGCTGCTCACTCGTCCTTGGCTTCGGCAACAACCTGATCTGAACAAACGAACA
ACCTTCCTGTTGTCTCTGAAACTAGCATGGTGTAGTATTGGTAGTCTCGCGTTCATTTCA
GTACTAGCTTCCCAATAATTGGAGCGCTAAATGGCTGGTCCAGTATGTGTGTATACTGCT
GTTGTAAATCACCAAGCGGAATCAAGTTTACGACGTATGAATGCTGCAGCACTGATCTGA
GCTTCGTGTCACTATAACCTGTT

consensusID : consensus_5055#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [CGGCNGGCCTTCCACGGACGAGGAGGAGGAGGAGGACGACGACGACGGCNACCACGAAANCNCGGANAGGNAGCTGAGCTTTGGGAAGTTCCGCTTCANNCAGCAGCACGTTCGCGCAGGTCGAGCACCCNCTGTTCCTCGCCAGAGCCTCGGGATCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGGGCAAGCGGCNGTNTCCGACGGCGGCGGCGGCGGTNGCGCGAAGNAGTTTTACCTGGGTGACCTCCGACAACGGAGNGAATCGCTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTTTCCTNAGGAACTACGCGCAGTTCCTGTATCAGATTAAA]

[+] EMBL C27642               [CGGCNGGCCTTCCACGGACGAGGAGGAGGAGGAGGACGACGACGACGGCNACCACGAAANCNCGGANAGGNAGCTGAGCTTTGGGAAGTTCCGCTTCANNCAGCAGCACGTTCGCGCAGGTCGAGCACCCNCTGTTCCTCGCCAGAGCCTCGGGATCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGGGCAAGCGGCNGTNTCCGACGGCGGCGGCGGCGGTNGCGCGAAGNAGTTTTACCTGGGTGACCTCCGACAACGGAGNGAATCGCTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTTTCCTNAGGAACTACGCGCAGTTCCTGTATCAGATTAAA]




>consensus_5055#1
CGGCNGGCCTTCCACGGACGAGGAGGAGGAGGAGGACGACGACGACGGCNACCACGAAAN
CNCGGANAGGNAGCTGAGCTTTGGGAAGTTCCGCTTCANNCAGCAGCACGTTCGCGCAGG
TCGAGCACCCNCTGTTCCTCGCCAGAGCCTCGGGATCGACCGCCTCGGCTCAGGCTTGCT
GAGCGCCGACGGGCAAGCGGCNGTNTCCGACGGCGGCGGCGGCGGTNGCGCGAAGNAGTT
TTACCTGGGTGACCTCCGACAACGGAGNGAATCGCTCTGACATCGAGATGCATTACAAGA
AGATGATCGAGGAGGACCCATGCAACGGCCTCTTTCCTNAGGAACTACGCGCAGTTCCTG
TATCAGATTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5055#0      GCGTCAGGCCAAACGCCTCCCCTTCCCGATGCACACTGTAGCTACTTGCAACTTGCGCAA 60
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      GGAGTATCCCCGAACGCATATTTCCTTTCCTTCGTCTACCTCCAGCAGCATCAGCGGCGG 120
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      CGGCAGCTGGATCCTCCCTCCCGAGACTGAGAGCACGGCAAGATTTGCAAAATTGCAAGG 180
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      CGAGTAGTTGCGTGAGACTGAGTTTTTGAGTGAGCGAGTTAGCCATGCTGGTAAGGAGCG 240
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      CCTCCACGCCGGTTCTCGGCGCGCTCCTCCCGTCCGGGAGCCACTCGCCGGCTGTCTCCT 300
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      CCCCGGCCGTCCACTTCTTCGCCGACTCGTCGCCGACGGTCTCGTACCACCCGCCGACCA 360
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      TCTCCTGCCGGCTCACGCCAGGCGGCTCCGACGCCCACGACCGCTCCCTCGGTGGCCTGC 420
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      GCCGCGCTTGCTCCGATGGGAACCTCGCCGCTCTAGGCGCCAGCGGGGACGACGACCACC 480
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      ACCACCACCTCCCGCCGTCCGGCAAGTGCGCGCCGCGCTCCAAGCCAACGACGCTCGAGA 540
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      CGATCCAGTCGTTCACGCAACGCGGCGGCGCTTCCACGGACGAGGAGGAGGAGGAGGACG 600
consensus_5055#1      ----------------------CGGCNGGCCTTCCACGGACGAGGAGGAGGAGGAGGACG 38
                                            **** *  ******************************

consensus_5055#0      ACGACGACGGCGACCACGAAAGCGCGGAGCAGGAGCTGAGCTTTGGGAAGTTCCGCTTCA 660
consensus_5055#1      ACGACGACGGCNACCACGAAANCNCGGANAGGNAGCTGAGCTTTGGGAAGTTCCGCTTCA 98
                      *********** ********* * ****   * ***************************

consensus_5055#0      GCGGCAGCAGCACGTTCGCGCAGGTCGAGCACCCGCTGTTCCTCGCCAGAGGCCTCGGGA 720
consensus_5055#1      NN--CAGCAGCACGTTCGCGCAGGTCGAGCACCCNCTGTTCCTCGCCAGAG-CCTCGGGA 155
                          ****************************** **************** ********

consensus_5055#0      TCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGGCGGCAGCGGCGGTT-CCGACGGC 779
consensus_5055#1      TCGACCGCCTCGGCTCAGGCTTGCTGAGCGCCGACGG-GCAAGCGGCNGTNTCCGACGGC 214
                      ************************************* *  ****** **  ********

consensus_5055#0      GGCGGCGGCGGTGGCGCCGGAGGCAGTTACCTGG-TGACCTCCGACAACGGAGGGAATCG 838
consensus_5055#1      GGCGGCGGCGGTNGCGCGAAGNAGTTTTACCTGGGTGACCTCCGACAACGGAGNGAATCG 274
                      ************ ****         ******** ****************** ******

consensus_5055#0      CTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTT 898
consensus_5055#1      CTCTGACATCGAGATGCATTACAAGAAGATGATCGAGGAGGACCCATGCAACGGCCTCTT 334
                      ************************************************************

consensus_5055#0      -CCTGAGGAACTACGCGCAGTTCCTGTATCAGATTAAAGGGGATAGCCGGAAGGCAGAGG 957
consensus_5055#1      TCCTNAGGAACTACGCGCAGTTCCTGTATCAGATTAAA---------------------- 372
                       *** *********************************                      

consensus_5055#0      AGTACTACTCCCGTGCCATCCTCGCCGACCCGAACGACGGCGAGCTCCTGTCGGAGTACG 1017
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      CCAAGCTGGTCTGGGACGTGCACCGCGACGAGGACCGCGCCTCCAGCTACTTCGAGCGGG 1077
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      CAGCGAGAGCCTCCCCGCAGAACAGCCACGTTCTCGCCGCGCACGCCGCGTTCTTGTGGG 1137
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      ACACGGACGACGGCGACGGGCCGGAGGGTAGCAGCAGCGACGCGCTGGGCTACGCGGGGT 1197
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      TCGCCGCTGCTGCTGCTCACTCGTCCTTGGCTTCGGCAACAACCTGATCTGAACAAACGA 1257
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      ACAACCTTCCTGTTGTCTCTGAAACTAGCATGGTGTAGTATTGGTAGTCTCGCGTTCATT 1317
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      TCAGTACTAGCTTCCCAATAATTGGAGCGCTAAATGGCTGGTCCAGTATGTGTGTATACT 1377
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      GCTGTTGTAAATCACCAAGCGGAATCAAGTTTACGACGTATGAATGCTGCAGCACTGATC 1437
consensus_5055#1      ------------------------------------------------------------
                                                                                  

consensus_5055#0      TGAGCTTCGTGTCACTATAACCTGTT 1463
consensus_5055#1      --------------------------