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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1317 fasta sequence
[ACACATCAATGCCACCGACGTCATGCTTGGAGACTACAGAGGTAAGCCTTGCAGGGTGGTGACGCCGTACGACGGCGTACGGAAGGTGGTCAGCTCGACGTCGGTGCACGCATGCGACAAGGGATCGTGCGACACGGCGGCCGCGGCGGCGAAGACGGTGGACGCGACCATCGTCGTCGCCGGCCTGAACATGAGCGTGGAGAGGGAGAGCAACGACAGGGAAGACCTCCTCCTGCCGTGGAGCCAGGCCAGCTGGATCAACGCCGTCGCCGAGGCCTCGCCGTCGCCGATCGTCCTGGTGATCATGTCCGCCGGCGGCGTCGACGTCTCCTTCGCCCAGGACAACCCCAAGATCGGCGCCGTCGTCTGGGCCGGCTACCCCGGCGAGGAAGGCGGCACGGCCATCGCCGACGTGCTCTTCGGAAAATACAATCCAGGAGGAAGATTGCCGCTGACGTGGTACAAGAACGAGTACGTGAGCAAGATCCCGATGACGTCCATGGCGCTGCGGCCGGACGCCGAGCACGGCTACCCCGGCCGGACCTACAAGTTCTACGGCGGCGCCGACGTGCTCTACCCGTTCGGCCACGGCCTCAGCTACACCAACTTCACCTACGCGTCGGCCACCGCCGCCGCCCCGGTCACGGTCAAGGTCGGCGCGTGGGAGTACTGCAAGCAGCTCACCTACAAGGCCGGGGTGTCCTCGCCGCCGGCGTGCCCGGCCGTGAACGTGGCCAGCCACGCGTGCCAGGAGGAGGTCAGCTTCGCCGTCACGGTGGCCAACACGGGCGGCAGGGACGGCACCCACGTCGTGCCGATGTACACGGCGCCGCCGGCGGAGGTGGACGGCGCGCCGCGGAAGCAGCTGGTGGCGTTCCGGCGGGTGCGGGTGGCCACGGGCGCCGCCGTCGAGGTGGCCTTCGCGCTCAACGTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCGTCGGAGACGACGCGCTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAAGCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTCATTTTTAGTTTTGCTCAATGTATTACTGTGATGGCATGTTATTCAGCAATGTTACACTTTTTTTTTCAATAATGGAAATCAATCAT]
[+] EMBL AK105791 [ACACATCAATGCCACCGACGTCATGCTTGGAGACTACAGAGGTAAGCCTTGCAGGGTGGTGACGCCGTACGACGGCGTACGGAAGGTGGTCAGCTCGACGTCGGTGCACGCATGCGACAAGGGATCGTGCGACACGGCGGCCGCGGCGGCGAAGACGGTGGACGCGACCATCGTCGTCGCCGGCCTGAACATGAGCGTGGAGAGGGAGAGCAACGACAGGGAAGACCTCCTCCTGCCGTGGAGCCAGGCCAGCTGGATCAACGCCGTCGCCGAGGCCTCGCCGTCGCCGATCGTCCTGGTGATCATGTCCGCCGGCGGCGTCGACGTCTCCTTCGCCCAGGACAACCCCAAGATCGGCGCCGTCGTCTGGGCCGGCTACCCCGGCGAGGAAGGCGGCACGGCCATCGCCGACGTGCTCTTCGGAAAATACAATCCAGGAGGAAGATTGCCGCTGACGTGGTACAAGAACGAGTACGTGAGCAAGATCCCGATGACGTCCATGGCGCTGCGGCCGGACGCCGAGCACGGCTACCCCGGCCGGACCTACAAGTTCTACGGCGGCGCCGACGTGCTCTACCCGTTCGGCCACGGCCTCAGCTACACCAACTTCACCTACGCGTCGGCCACCGCCGCCGCCCCGGTCACGGTCAAGGTCGGCGCGTGGGAGTACTGCAAGCAGCTCACCTACAAGGCCGGGGTGTCCTCGCCGCCGGCGTGCCCGGCCGTGAACGTGGCCAGCCACGCGTGCCAGGAGGAGGTCAGCTTCGCCGTCACGGTGGCCAACACGGGCGGCAGGGACGGCACCCACGTCGTGCCGATGTACACGGCGCCGCCGGCGGAGGTGGACGGCGCGCCGCGGAAGCAGCTGGTGGCGTTCCGGCGGGTGCGGGTGGCCACGGGCGCCGCCGTCGAGGTGGCCTTCGCGCTCAACGTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCGTCGGAGACGACGCGCTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAAGCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTCATTTTTAGTTTTGCTCAATGTATTACTGTGATGGCATGTTATTCAGCAATGTTACACTTTTTTTTTCAATAATGGAAATCAATCAT]
consensusID : consensus_5058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 317 fasta sequence
[NTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCTCGGAGACGACAGCNTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA]
[+] EMBL AU032681 [NTGTGCAAGGCGTTCGCGATCGTCGAGGAGACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCTCGGAGACGACAGCNTGTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCATCATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA]
[+] EMBL AU032689 [ CCTGTTCAGATCGACCTGCAGGCGGCNGCNTAGCAGCNTAGGTTCTCTGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATCGAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAANTTTTACAAAGCACATTGCATNATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5058#0 ACACATCAATGCCACCGACGTCATGCTTGGAGACTACAGAGGTAAGCCTTGCAGGGTGGT 60
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 GACGCCGTACGACGGCGTACGGAAGGTGGTCAGCTCGACGTCGGTGCACGCATGCGACAA 120
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 GGGATCGTGCGACACGGCGGCCGCGGCGGCGAAGACGGTGGACGCGACCATCGTCGTCGC 180
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 CGGCCTGAACATGAGCGTGGAGAGGGAGAGCAACGACAGGGAAGACCTCCTCCTGCCGTG 240
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 GAGCCAGGCCAGCTGGATCAACGCCGTCGCCGAGGCCTCGCCGTCGCCGATCGTCCTGGT 300
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 GATCATGTCCGCCGGCGGCGTCGACGTCTCCTTCGCCCAGGACAACCCCAAGATCGGCGC 360
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 CGTCGTCTGGGCCGGCTACCCCGGCGAGGAAGGCGGCACGGCCATCGCCGACGTGCTCTT 420
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 CGGAAAATACAATCCAGGAGGAAGATTGCCGCTGACGTGGTACAAGAACGAGTACGTGAG 480
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 CAAGATCCCGATGACGTCCATGGCGCTGCGGCCGGACGCCGAGCACGGCTACCCCGGCCG 540
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 GACCTACAAGTTCTACGGCGGCGCCGACGTGCTCTACCCGTTCGGCCACGGCCTCAGCTA 600
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 CACCAACTTCACCTACGCGTCGGCCACCGCCGCCGCCCCGGTCACGGTCAAGGTCGGCGC 660
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 GTGGGAGTACTGCAAGCAGCTCACCTACAAGGCCGGGGTGTCCTCGCCGCCGGCGTGCCC 720
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 GGCCGTGAACGTGGCCAGCCACGCGTGCCAGGAGGAGGTCAGCTTCGCCGTCACGGTGGC 780
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 CAACACGGGCGGCAGGGACGGCACCCACGTCGTGCCGATGTACACGGCGCCGCCGGCGGA 840
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 GGTGGACGGCGCGCCGCGGAAGCAGCTGGTGGCGTTCCGGCGGGTGCGGGTGGCCACGGG 900
consensus_5058#1 ------------------------------------------------------------
consensus_5058#0 CGCCGCCGTCGAGGTGGCCTTCGCGCTCAACGTGTGCAAGGCGTTCGCGATCGTCGAGGA 960
consensus_5058#1 -------------------------------NTGTGCAAGGCGTTCGCGATCGTCGAGGA 29
****************************
consensus_5058#0 GACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTCGTCGGAGACGACGCGCT 1020
consensus_5058#1 GACGGCGTACACCGTCGTGCCGTCGGGAGTCAGCAGGGTCCTC-TCGGAGACGACAGCNT 88
******************************************* *********** *
consensus_5058#0 GTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTC 1080
consensus_5058#1 GTCGCTGTCCTTCCCTGTTCAGATCGACCTGCAGGCGGCAGCATAGCAGCATAGGTTCTC 148
************************************************************
consensus_5058#0 TGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATC 1140
consensus_5058#1 TGCAATTCTTGGAGTTCGTTGGATTCTTTTGCTGGGGTGGTAAAAGGTAAAAAAAAAATC 208
************************************************************
consensus_5058#0 GAAGCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCA 1200
consensus_5058#1 GAANCAAGTGTAATTAGTTTACACCACGCTATAGATGAAACTTTTACAAAGCACATTGCA 268
*** ********************************************************
consensus_5058#0 TCATTGGGAATTAATTGGAACAGGAATTTTCATTTTTAGTTTTGCTCAATGTATTACTGT 1260
consensus_5058#1 TCATTGGGAATTAATTGGAACAGGAATTTTNATTTTTAAAAAAAAAAAA----------- 317
****************************** ******* **
consensus_5058#0 GATGGCATGTTATTCAGCAATGTTACACTTTTTTTTTCAATAATGGAAATCAATCAT 1317
consensus_5058#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||