These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 830 fasta sequence [GTCCTCCCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCTCTCTCTCATTTCTTTTCTCTCCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTGCTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAGGCGGCCATCGGATGACTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGCTCCTGGTTGAGGCGAGTTAATCTTGACGACGATGTCGAGGAGCTCGTGTCGGAGATGAGGAACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCGATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGCTGTACGACGCGGATGACGTGCTGGACAAGCTCGACTACTGTCGTCTTCAAGAACAGATCATAAAAGGCAACAGCGAGGATGTTAAATCTACACCTACTTCATCTTTCTTTTCTATTAACAGATGGTTCACCGTCACCGGCTGGAAAAGGAAAAGAGAAGAAAACCACACACTCCTTGATAATAAGCGCCAGTTTTCTGCAACGATAAAACAAATTGCTGGAAAACTACGAGATGCTCGTGGTGATGTCAGCAAGGGTCTCAAGATAAACGGATTAAAGTCTCCTGAAGCTTCAAATCTGAGTCATCGGAGTACAGCCCGGGCCACAAATGCAACAACAACGTCTTATGTTCTTGAGCCCATAGTGTATGGGAGGGCAACAGAGATTGAATCTATCAAAAATCTGATCATGAGCAATAGATCCGATGGCAT] [+] EMBL CB630708 [GTCCTCCCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCTCTCTCTCATTTCTTTTCTCTCCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTGCTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAGGCGGCCATCGGATGACTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGCTCCTGGTTGAGGCGAGTTAATCTTGACGACGATGTCGAGGAGCTCGTGTCGGAGATGAGGAACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCGATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGCTGTACGACGCGGATGACGTGCTGGACAAGCTCGACTACTGTCGTCTTCAAGAACAGATCATAAAAGGCAACAGCGAGGATGTTAAATCTACACCTACTTCATCTTTCTTTTCTATTAACAGATGGTTCACCGTCACCGGCTGGAAAAGGAAAAGAGAAGAAAACCACACACTCCTTGATAATAAGCGCCAGTTTTCTGCAACGATAAAACAAATTGCTGGAAAACTACGAGATGCTCGTGGTGATGTCAGCAAGGGTCTCAAGATAAACGGATTAAAGTCTCCTGAAGCTTCAAATCTGAGTCATCGGAGTACAGCCCGGGCCACAAATGCAACAACAACGTCTTATGTTCTTGAGCCCATAGTGTATGGGAGGGCAACAGAGATTGAATCTATCAAAAATCTGATCATGAGCAATAGATCCGATGGCAT] consensusID : consensus_506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [TTTTTTTTTCATAATATCATGAACTTATAAGATTTTATTGTAATTTACTGAAATGTTGGTCAAATTAAGTCAAGCTACGCACTCAGCCCTCTTTCGGCGAAATAAAGTGCCATACCCCAACTGGAAATAAAATATTTGACAGAGCTTAGTGGAGACGCCATAGCCATGCACCATGTCCTCCCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCATTTCTTTTCTCTCCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTGCTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAGGCGGCCATCGAATGGCTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGCTCCTGGTTGAGGCGAGTTAATCTTGACGACAATCTCGAGGAGCTCGTGTCGGAGATGAGGAACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCGATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGAGGTTCGCCTTCCCCTTGTCT] [+] EMBL CA759676 [TTTTTTTTTCATAATATCATGAACTTATAAGATTTTATTGTAATTTACTGAAATGTTGGTCAAATTAAGTCAAGCTACGCACTCAGCCCTCTTTCGGCGAAATAAAGTGCCATACCCCAACTGGAAATAAAATATTTGACAGAGCTTAGTGGAGACGCCATAGCCATGCACCATGTCCTCCCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCATTTCTTTTCTCTCCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTGCTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAGGCGGCCATCGAATGGCTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGCTCCTGGTTGAGGCGAGTTAATCTTGACGACAATCTCGAGGAGCTCGTGTCGGAGATGAGGAACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCGATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGAGGTTCGCCTTCCCCTTGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_506#0 ------------------------------------------------------------ consensus_506#1 TTTTTTTTTCATAATATCATGAACTTATAAGATTTTATTGTAATTTACTGAAATGTTGGT 60 consensus_506#0 ------------------------------------------------------------ consensus_506#1 CAAATTAAGTCAAGCTACGCACTCAGCCCTCTTTCGGCGAAATAAAGTGCCATACCCCAA 120 consensus_506#0 ------------------------------------------------------GTCCTC 6 consensus_506#1 CTGGAAATAAAATATTTGACAGAGCTTAGTGGAGACGCCATAGCCATGCACCATGTCCTC 180 ****** consensus_506#0 CCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTCTCTCTCTCTCATTTCTTTTCTCT 66 consensus_506#1 CCTAGTCATTTTTTACTTCGTCCAATTGCTCTCTCTC--------TCATTTCTTTTCTCT 232 ************************************* *************** consensus_506#0 CCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTG 126 consensus_506#1 CCCAGACAATACAATTCGGTTGCTCCTTCACTCCCCATTCTCCAAAATCTCCCAGAGCTG 292 ************************************************************ consensus_506#0 CTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAG 186 consensus_506#1 CTCCATACTCCAGTTGCCTCCTGACCGGCTTCGATGGAGGTTTGGAACACGGTGGGGCAG 352 ************************************************************ consensus_506#0 GCGGCCATCGGATGACTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGC 246 consensus_506#1 GCGGCCATCGAATGGCTGGTGGAGAGCGTCCTCGGGTCACTGTTCACGGACAAGCTGAGC 412 ********** *** ********************************************* consensus_506#0 TCCTGGTTGAGGCGAGTTAATCTTGACGACGATGTCGAGGAGCTCGTGTCGGAGATGAGG 306 consensus_506#1 TCCTGGTTGAGGCGAGTTAATCTTGACGACAATCTCGAGGAGCTCGTGTCGGAGATGAGG 472 ****************************** ** ************************** consensus_506#0 AACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCG 366 consensus_506#1 AACGTCGCCGTGGTGCTCGAGGCCGCCAAGGGGATGAAGGTCGGCGATCAGAATGAGCCG 532 ************************************************************ consensus_506#0 ATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGCTGTACGACGCGGATGACGTGCTGGAC 426 consensus_506#1 ATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGAGGTTCGCCTT---CCCCTTGTCT--- 586 ********************************* ** ** * * ** consensus_506#0 AAGCTCGACTACTGTCGTCTTCAAGAACAGATCATAAAAGGCAACAGCGAGGATGTTAAA 486 consensus_506#1 ------------------------------------------------------------ consensus_506#0 TCTACACCTACTTCATCTTTCTTTTCTATTAACAGATGGTTCACCGTCACCGGCTGGAAA 546 consensus_506#1 ------------------------------------------------------------ consensus_506#0 AGGAAAAGAGAAGAAAACCACACACTCCTTGATAATAAGCGCCAGTTTTCTGCAACGATA 606 consensus_506#1 ------------------------------------------------------------ consensus_506#0 AAACAAATTGCTGGAAAACTACGAGATGCTCGTGGTGATGTCAGCAAGGGTCTCAAGATA 666 consensus_506#1 ------------------------------------------------------------ consensus_506#0 AACGGATTAAAGTCTCCTGAAGCTTCAAATCTGAGTCATCGGAGTACAGCCCGGGCCACA 726 consensus_506#1 ------------------------------------------------------------ consensus_506#0 AATGCAACAACAACGTCTTATGTTCTTGAGCCCATAGTGTATGGGAGGGCAACAGAGATT 786 consensus_506#1 ------------------------------------------------------------ consensus_506#0 GAATCTATCAAAAATCTGATCATGAGCAATAGATCCGATGGCAT 830 consensus_506#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||