These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1909 fasta sequence [TTTTTTGTTTTTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCGAAGAGATTTTTTTTAGATAATGGATTTTCATTAATCCGGCCTCTATATCCACAAGGGATATACACAGCCAAAAGGATACAAGAGTACTAGACTCACACCTCAACGAAGAGGAGAACACAAAACCAAAAAGCAAGAAAACCTACAACCTCGGTAAATCCCTGCATCCTGACATCCTCAACTGAAACGTCGCCACCGCCCCTAGTGCGTTGTCGCTGCGAATCTCCATAGAGTCATTTTCATGGCCACGGGCAGCCGGGGAAGCCCACCCTCATCCATCGTCCTCCGGTCAGAACTAGCCGACCAGACACTAGTTGAAAGCAACTGTATTTGCTTCGTCGGGATCTTAAGCCTCCGCCGCCCATAGGGCCGCCATTGACTTCAGACTCCTACTCCGTTCTCGGACTCCCAGCCCGCTGCCANCTTTGCGCCGCTGTCGCCGANCAAGTCTGCCGCTGGACGAAGGAGGGGATAGAGGACTAGCTCCATCTCCATCCAGAACAGCTACTCACCAAGTCCGCGACGCCGTCGGTGACAAAGGAAGGAACGGTGGGCTAGCCCCTGTCACCACCGCCCATTGAGACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCCCACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCCAACCGGCGCCATAGGCGCCTGCCTTGCCGACTGCCACTGGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTCGCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGGGACTGAGGAGGAAGCCTTGCCGCCAACCCAGCGGACCTGCACTCTCCGGTGACCTGCTCGAACGGTGGCAAGTTGAAAAGCGACGACGGCGGTGAGGATTTACAGGACCGGGCAACTAGCCAGCAGCCGCCGAGCGCTGAGCAGAAAAGGTGGAAAAGGGAGAAATGGGAAAGGGAAAAAGGTGAAAGGGGGAGGTGAAAAGGGAGGAGGTGGGTGGGGGCGCCGCCGGCGGCTGCGGCACCGGCGCCGGCGCCGGCGAGGTGGGCGACGAGGGGAAAAGCGCTGGGAGTCCTGTTCTCCTCCCGGGTCGCCTCAGAGAGCGACACGGGAGTCAAAGCGTCCCCACAATTTCCGTATAATATGACGGGATAACAGGAATCTTGATAAGCGAAGAGATGAGGAGGATATAAGATGATGTTTATGCCTTTGTGGACAGGTGAACCCGAAGGGGGTGAAATCCGGCAATGGCGCGGCGGCGGCGGCGAGAGGGGTTTTTGGACTGGACTGGCCTGAGCCGTCGGTGACATTCGCGCTGTCCTGCGGAAGCTGGTCTTCGCCGGCGGTGAGGGTGTACACGGCTTGCCACGTCGAGGAAGAGCTGGAGGCAGCCAAGAGGGACTACCTGCAGGCCGCCGTCGGCGTCTCGACGGCGACCAGCATCTCGATCCCCAAGCTCCTGCACTGGTACCTTCTTGACTTCACCAAGGACGTGAGCTCCCTCATGGACTGGGTGTGCCTGCAGCTGCCCGGCGAGCGGCGGCGGCACGCCGTCGAGGCCGTCGAGGCCAGCCGCCGGAGCCCGTCGCCGCCGCCTATCCAGGTTGTGCCGTACGAGTTCAGGTTCAGGTATCTTCTGGCCACGTAGACCTGCCACGGTGTATGGATTGGACACTGTAGAAGGGCAGAATGGCTTGTTTTTTTGTGTAGCACAAGTTTGCAGCTAATTGCTGGAATTTTTTTTTTTTGCATTTGTAAAGGGAAATACACATGAAGAGTTGAGAGTGATATATATCATGTTG] [-] EMBL C99712 [TTTTTTGTTTTTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCGAAGAGATTTTTTTTAGATAATGGATTTTCATTAATCCGGCCTCTATATCCACAAGGGATATACACAGCCAAAAGGATACAAGAGTACTAGACTCACACCTCAACGAAGAGGAGAACACAAAACCAAAAAGCAAGAAAACCTACAACCTCGGTAAATCCCTGCATCCTGACATCCTCAACTGAAACGTCGCCACCGCCCCTAGTGCGTTGTCGCTGCGAATCTCCATAGAGTCATTTTCATGGCCACGGGCAGCCGGGGAAGCCCACCCTCATCCATCGTCCTCCGGTCAGAACTAGCCGACCAGACACTAGTTGAAAGCAACTGTATTTGCTTCGTCGGGATCTTAAGCCTCCGCCGCCCATAGGGCCGCCATTGACTTCAGACTCCTACTCCGTTCTCGGACTCCCAGCCCGCTGCCANCTTTGCGCCGCTGTCGCCGANCAAGTCTGCCGCTGGACGAAGGAGGGGATAGAGGACTAGCTCCATCTC ] [+] EMBL AK066585 [ CAGACTCCTACTCCGTTCTCGGACTCCCAGCCCGCTGCCACCTTTGCGCCGCTGTCGCCGACCAAGTCTGCCGCT GACGAAGGAGGGGATAGAGGACTAGCTCCATCTCCATCCAGAACAGCTACTCACCAAGTCCGCGACGCCGTCGGTGACAAAGGAAGGAACGGTGGGCTAGCCCCTGTCACCACCGCCCATTGAGACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCCCACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCCAACCGGCGCCATAGGCGCCTGCCTTGCCGACTGCCACTGGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTCGCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGGGACTGAGGAGGAAGCCTTGCCGCCAACCCAGCGGACCTGCACTCTCCGGTGACCTGCTCGAACGGTGGCAAGTTGAAAAGCGACGACGGCGGTGAGGATTTACAGGACCGGGCAACTAGCCAGCAGCCGCCGAGCGCTGAGCAGAAAAGGTGGAAAAGGGAGAAATGGGAAAGGGAAAAAGGTGAAAGGGGGAGGTGAAAAGGGAGGAGGTGGGTGGGGGCGCCGCCGGCGGCTGCGGCACCGGCGCCGGCGCCGGCGAGGTGGGCGACGAGGGGAAAAGCGCTGGGAGTCCTGTTCTCCTCCCGGGTCGCCTCAGAGAGCGACACGGGAGTCAAAGCGTCCCCACAATTTCCGTATAATATGACGGGATAACAGGAATCTTGATAAGCGAAGAGATGAGGAGGATATAAGATGATGTTTATGCCTTTGTGGACAGGTGAACCCGAAGGGGGTGAAATCCGGCAATGGCGCGGCGGCGGCGGCGAGAGGGGTTTTTGGACTGGACTGGCCTGAGCCGTCGGTGACATTCGCGCTGTCCTGCGGAAGCTGGTCTTCGCCGGCGGTGAGGGTGTACACGGCTTGCCACGTCGAGGAAGAGCTGGAGGCAGCCAAGAGGGACTACCTGCAGGCCGCCGTCGGCGTCTCGACGGCGACCAGCATCTCGATCCCCAAGCTCCTGCACTGGTACCTTCTTGACTTCACCAAGGACGTGAGCTCCCTCATGGACTGGGTGTGCCTGCAGCTGCCCGGCGAGCGGCGGCGGCACGCCGTCGAGGCCGTCGAGGCCAGCCGCCGGAGCCCGTCGCCGCCGCCTATCCAGGTTGTGCCGTACGAGTTCAGGTTCAGGTATCTTCTGGCCACGTAGACCTGCCACGGTGTATGGATTGGACACTGTAGAAGGGCAGAATGGCTTGTTTTTTTGTGTAGCACAAGTTTGCAGCTAATTGCTGGAATTTTTTTTTTTTGCATTTGTAAAGGGAAATACACATGAAGAGTTGAGAGTGATATATATCATGTTG] consensusID : consensus_5068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [CGCCGTCGGTNACAAAAGNAAGGAACGGTGGCTAGCCCCTTGTCACCACCGCCCATTGAGACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCCCACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCNNANANNCGCCATAGGCGCCTGCCTTGCCGACNTGCACTGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTCGCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGCTTCCTCCTCAGTCCCCTTCCTCCTCAGTCCCCTCTCT] [-] EMBL C73934 [CGCCGTCGGTNACAAAAGNAAGGAACGGTGGCTAGCCCCTTGTCACCACCGCCCATTGAGACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCCCACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCNNANANNCGCCATAGGCGCCTGCCTTGCCGACNTGCACTGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTCGCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGCTTCCTCCTCAGTCCCCTTCCTCCTCAGTCCCCTCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5068#0 TTTTTTGTTTTTTTTGTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTT 60 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 TTTTTTTTTTTTTTTTAAGCGAAGAGATTTTTTTTAGATAATGGATTTTCATTAATCCGG 120 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 CCTCTATATCCACAAGGGATATACACAGCCAAAAGGATACAAGAGTACTAGACTCACACC 180 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 TCAACGAAGAGGAGAACACAAAACCAAAAAGCAAGAAAACCTACAACCTCGGTAAATCCC 240 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 TGCATCCTGACATCCTCAACTGAAACGTCGCCACCGCCCCTAGTGCGTTGTCGCTGCGAA 300 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 TCTCCATAGAGTCATTTTCATGGCCACGGGCAGCCGGGGAAGCCCACCCTCATCCATCGT 360 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 CCTCCGGTCAGAACTAGCCGACCAGACACTAGTTGAAAGCAACTGTATTTGCTTCGTCGG 420 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 GATCTTAAGCCTCCGCCGCCCATAGGGCCGCCATTGACTTCAGACTCCTACTCCGTTCTC 480 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 GGACTCCCAGCCCGCTGCCANCTTTGCGCCGCTGTCGCCGANCAAGTCTGCCGCTGGACG 540 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 AAGGAGGGGATAGAGGACTAGCTCCATCTCCATCCAGAACAGCTACTCACCAAGTCCGCG 600 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 ACGCCGTCGGTGACAAA-GGAAGGAACGGTGGGCTAGCCCCTGTCACCACCGCCCATTGA 659 consensus_5068#1 -CGCCGTCGGTNACAAAAGNAAGGAACGGTGGCTAGCCCCTTGTCACCACCGCCCATTGA 59 ********** ***** * ************ *** ******************* consensus_5068#0 GACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCC 719 consensus_5068#1 GACCACCGGTGATGGAGAACTTGCCGCCATACAGCAACCATGCCCATCACCGGAGCGCCC 119 ************************************************************ consensus_5068#0 CACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCCAACCGGCGCCATAGGCGCCT 779 consensus_5068#1 CACTAACCGGCAACCTCCACCACTGCCACCACCCCCGGCNNANANNCGCCATAGGCGCCT 179 *************************************** * ************** consensus_5068#0 GCCTTGCCGACTGCCACTGGGCGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTC 839 consensus_5068#1 GCCTTGCCGACNTGCACTGG-CGTGGCCGCTCCCGCCGTCGACATCACCTCCACTGCGTC 238 *********** ****** *************************************** consensus_5068#0 GCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGGGACTGAGGA 899 consensus_5068#1 GCTCGCCGGAGCCAGGCGAGACCCACCGTGCCGCCCTCTCTCTAGGAAGGCTTCCTCCTC 298 ************************************************** * consensus_5068#0 GGAAGCCTTGCCGCCAACCCAGCGGACCTGCACTCTCCGGTGACCTGCTCGAACGGTGGC 959 consensus_5068#1 AGTCCCCTTCCTCCTCAGTCCCCTCTCT-------------------------------- 326 * **** * * * * * * consensus_5068#0 AAGTTGAAAAGCGACGACGGCGGTGAGGATTTACAGGACCGGGCAACTAGCCAGCAGCCG 1019 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 CCGAGCGCTGAGCAGAAAAGGTGGAAAAGGGAGAAATGGGAAAGGGAAAAAGGTGAAAGG 1079 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 GGGAGGTGAAAAGGGAGGAGGTGGGTGGGGGCGCCGCCGGCGGCTGCGGCACCGGCGCCG 1139 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 GCGCCGGCGAGGTGGGCGACGAGGGGAAAAGCGCTGGGAGTCCTGTTCTCCTCCCGGGTC 1199 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 GCCTCAGAGAGCGACACGGGAGTCAAAGCGTCCCCACAATTTCCGTATAATATGACGGGA 1259 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 TAACAGGAATCTTGATAAGCGAAGAGATGAGGAGGATATAAGATGATGTTTATGCCTTTG 1319 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 TGGACAGGTGAACCCGAAGGGGGTGAAATCCGGCAATGGCGCGGCGGCGGCGGCGAGAGG 1379 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 GGTTTTTGGACTGGACTGGCCTGAGCCGTCGGTGACATTCGCGCTGTCCTGCGGAAGCTG 1439 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 GTCTTCGCCGGCGGTGAGGGTGTACACGGCTTGCCACGTCGAGGAAGAGCTGGAGGCAGC 1499 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 CAAGAGGGACTACCTGCAGGCCGCCGTCGGCGTCTCGACGGCGACCAGCATCTCGATCCC 1559 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 CAAGCTCCTGCACTGGTACCTTCTTGACTTCACCAAGGACGTGAGCTCCCTCATGGACTG 1619 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 GGTGTGCCTGCAGCTGCCCGGCGAGCGGCGGCGGCACGCCGTCGAGGCCGTCGAGGCCAG 1679 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 CCGCCGGAGCCCGTCGCCGCCGCCTATCCAGGTTGTGCCGTACGAGTTCAGGTTCAGGTA 1739 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 TCTTCTGGCCACGTAGACCTGCCACGGTGTATGGATTGGACACTGTAGAAGGGCAGAATG 1799 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 GCTTGTTTTTTTGTGTAGCACAAGTTTGCAGCTAATTGCTGGAATTTTTTTTTTTTGCAT 1859 consensus_5068#1 ------------------------------------------------------------ consensus_5068#0 TTGTAAAGGGAAATACACATGAAGAGTTGAGAGTGATATATATCATGTTG 1909 consensus_5068#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||