These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 826 fasta sequence [TTCACAGGCACACAGCACGAGCATCCGCCGCCGCCGCCGCCTCGCCTTAGCCTTGCCGCCTCGTTCCGGCGAGCAGCAGCCACCCGGCGGCCGGTCCACCACGCAGACGCAGTGACTCTTCGACGGTCGGGAAGGGAGAAAAGGCTTCTGGGTGAATCTTCTATTATTAGAAAATGAACAAGGGCAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGCAGGGCGAAAAATTGCATAAGGATAGCAAGGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGACATAACAAGAAGAGGGATATGCGATCCCTTTGGATAGAGCGTATCAATGCTGGTACACGATTGCATGGGGTGAACTATGGAAATTTCATGCATGGATTGATGAAGGAGAACATCCAGCTCAACCGGAAGGTGCTCTCAGAGCTTTCTATGCATGAGCCCTACAGCTTCAAGGCACTTGTTGATGTATCCCGCAGTGCATTTCCAGGGAACAGGCCGCCTGTTAAAAAGGAGGGTCTAGCAGCCATCCTGTGAAATGATTATGTTCAGTCGCACACTGCACTCATGATGGCCGTTGCAACTGAAAGTTACTACTATTATTGTCTTTTAGCTCAAAGGTGACTCATGTAATTCTCCCTTACCTATATTAAATATTTATGTTATTTTGTGTGATGTTCTCTGTAGCAGGAAACATCTAATTGCATTATTGTTTATCTGGCCCCTTTCTGTTAGTCTTATGGAGAGTGTTATTCCTTTACTGTTGACAATTTCAGCAACAGTACTATGGATTTGGTCATAATATATGCAAAGAGTCATGA] [+] EMBL AK064618 [TTCACAGGCACACAGCACGAGCATCCGCCGCCGCCGCCGCCTCGCCTTAGCCTTGCCGCCTCGTTCCGGCGAGCAGCAGCCACCCGGCGGCCGGTCCACCACGCAGACGCAGTGACTCTTCGACGGTCGGGAAGGGAGAAAAGGCTTCTGGGTGAATCTTCTATTATTAGAAAATGAACAAGGGCAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGCAGGGCGAAAAATTGCATAAGGATAGCAAGGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGACATAACAAGAAGAGGGATATGCGATCCCTTTGGATAGAGCGTATCAATGCTGGTACACGATTGCATGGGGTGAACTATGGAAATTTCATGCATGGATTGATGAAGGAGAACATCCAGCTCAACCGGAAGGTGCTCTCAGAGCTTTCTATGCATGAGCCCTACAGCTTCAAGGCACTTGTTGATGTATCCCGCAGTGCATTTCCAGGGAACAGGCCGCCTGTTAAAAAGGAGGGTCTAGCAGCCATCCTGTGAAATGATTATGTTCAGTCGCACACTGCACTCATGATGGCCGTTGCAACTGAAAGTTACTACTATTATTGTCTTTTAGCTCAAAGGTGACTCATGTAATTCTCCCTTACCTATATTAAATATTTATGTTATTTTGTGTGATGTTCTCTGTAGCAGGAAACATCTAATTGCATTATTGTTTATCTGGCCCCTTTCTGTTAGTCTTATGGAGAGTGTTATTCCTTTACTGTTGACAATTTCAGCAACAGTACTATGGATTTGGTCATAATATATGCAAAGAGTCATGA] [+] EMBL CF335590 [ CCGCCGCCGCCGCCGCCTCGCCTTAGCCTTGCCGCCTCGTTCCGGCGAGCAGCAGCCACCCGGCGGCCGGTCCACCACGCAGACGCAGTGACTCTTCGACGGTCGGGAAGGGAGAAAAGGCTTCTGGGTGAATCTTCTATTATTAGAAAATGAACAAGGGCAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGCAGGGCGAAAAATTGCATAAGGATAGCAAGGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGACATAACAAGAAGAGGGATATGCGATCCCTTTGGATAGAGCGTATCAATGCTGGTACACGATTGCATGGGGTGAACTATGGAAATTTCATGCATGGATTGATGAAGGAGAACATCCAGCTCAACCGGAAGGTGCTCTCAGAGCTTTCTATGCATGAGCCCTACAGCTTCAAGGCACTTGTTGATGTATCCCGCAGTGCATTTCCAGGGAACAGGCCGCCTGTTAAAAAGGAGGGTCTAGCAGCCATCCTGTGAAATGATTATGTTCAGTCGCACACTGCACTCATGATGGCCGTTGCAACTGAAAGTTACTACTATTATTGTCTTTTAGCTCAAAGGTGACTCATGTAATTCTCC ] consensusID : consensus_5070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [TCTCACCAACCCGTCCCAGCGAGCGCTCGCGCGGCGGAGATCGGCTGCCACCGCGGGCGGGATATCGCCGGCCAGGAAGCAGTTCCCTGAAAAGAAGATTGTGCAACAGTCCAGGAACTCGAAGATGAACAAGGGTAAAATTTTTAAGTTAGCAAAAGGATTCAGGGGAAGGGCAAAAAACTGCATAAGGATTGCTAGGGAGAGGGTGGAGAAAGCATTGCAATACTCATACAGGGATCGGCGCAACAAGAAGAGGGACATGCGGTCTCTTTGGATTGAGCGCATCAATGCTGGTACACGAATCCATGGGGTGAACTATGGCAATTTCATGCATGGATTGATGAAGGAGAATATCCAACTCAACAGGAAGGTACTTTCAGAGCTGTCGATGCATGAGCCATACAGCTTCAAAGCTCTTGTCGACGTCTCTCGCACTGCATTCCCTGGAAATAGGCCTGTTAAGAAGGAGGGGCTAGCGAGTATTCTTTAAAACAAACCTCCCCAAGTCTTGTTACAATCACGTCTGAATGAAACTGGTATTGTTGCCTTCAGCCTGCAGCCGTACAGGAAACTCAATGGCAGATATTGCATTTGTAATACTATGTAATTCTGTTTGGAAAGCTGTGGAAGAGAAACACCTAGTTACATGTGTTCTTCTTACCTGTTATTGTTGGTTTTTTTTGGATAATGTGCTCTGTTTACCTTGATAAATATAACAGAATG] [+] EMBL AK062985 [TCTCACCAACCCGTCCCAGCGAGCGCTCGCGCGGCGGAGATCGGCTGCCACCGCGGGCGGGATATCGCCGGCCAGGAAGCAGTTCCCTGAAAAGAAGATTGTGCAACAGTCCAGGAACTCGAAGATGAACAAGGGTAAAATTTTTAAGTTAGCAAAAGGATTCAGGGGAAGGGCAAAAAACTGCATAAGGATTGCTAGGGAGAGGGTGGAGAAAGCATTGCAATACTCATACAGGGATCGGCGCAACAAGAAGAGGGACATGCGGTCTCTTTGGATTGAGCGCATCAATGCTGGTACACGAATCCATGGGGTGAACTATGGCAATTTCATGCATGGATTGATGAAGGAGAATATCCAACTCAACAGGAAGGTACTTTCAGAGCTGTCGATGCATGAGCCATACAGCTTCAAAGCTCTTGTCGACGTCTCTCGCACTGCATTCCCTGGAAATAGGCCTGTTAAGAAGGAGGGGCTAGCGAGTATTCTTTAAAACAAACCTCCCCAAGTCTTGTTACAATCACGTCTGAATGAAACTGGTATTGTTGCCTTCAGCCTGCAGCCGTACAGGAAACTCAATGGCAGATATTGCATTTGTAATACTATGTAATTCTGTTTGGAAAGCTGTGGAAGAGAAACACCTAGTTACATGTGTTCTTCTTACCTGTTATTGTTGGTTTTTTTTGGATAATGTGCTCTGTTTACCTTGATAAATATAACAGAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5070#0 TTCACAGGCACACAGCACGAGCATCCGCCGCCGCCGCCGCCTCGCCTTAGCCTTGCCGCC 60 consensus_5070#1 --------------------------------------------------TCTCACCAAC 10 ** ** * consensus_5070#0 TCGTTCCGGCGAGCAGCAGCCACCCGGCGGCCGGTCCACCACGCAGACGCAGTGACTCTT 120 consensus_5070#1 CCGTCCCAGCGAGCGCTCGCGCGGCGGAGATCGGCTGCCACCGCGGGCGGGATA-----T 65 *** ** ****** ** *** * *** * *** * ** * * consensus_5070#0 CGACGGTCGGGAAGGGA------GAAAAGGCTTCTGGGTGAATCTTCTATTATTAGAAAA 174 consensus_5070#1 CGCCGGCCAGGAAGCAGTTCCCTGAAAAGAAGATTGTGCAACAGTCCAGGAACTCGAAGA 125 ** *** * ***** ****** ** * * * * * * *** * consensus_5070#0 TGAACAAGGGCAAGATTTTCAAGTTGGCAAAGGGATTTAGAGGCAGGGCGAAAAATTGCA 234 consensus_5070#1 TGAACAAGGGTAAAATTTTTAAGTTAGCAAAAGGATTCAGGGGAAGGGCAAAAAACTGCA 185 ********** ** ***** ***** ***** ***** ** ** ***** ***** **** consensus_5070#0 TAAGGATAGCAAGGGAGAGGGTTGAGAAAGCCTTGCAATATTCCTACAGGGATAGACATA 294 consensus_5070#1 TAAGGATTGCTAGGGAGAGGGTGGAGAAAGCATTGCAATACTCATACAGGGATCGGCGCA 245 ******* ** *********** ******** ******** ** ********* * * * consensus_5070#0 ACAAGAAGAGGGATATGCGATCCCTTTGGATAGAGCGTATCAATGCTGGTACACGATTGC 354 consensus_5070#1 ACAAGAAGAGGGACATGCGGTCTCTTTGGATTGAGCGCATCAATGCTGGTACACGAATCC 305 ************* ***** ** ******** ***** ****************** * * consensus_5070#0 ATGGGGTGAACTATGGAAATTTCATGCATGGATTGATGAAGGAGAACATCCAGCTCAACC 414 consensus_5070#1 ATGGGGTGAACTATGGCAATTTCATGCATGGATTGATGAAGGAGAATATCCAACTCAACA 365 **************** ***************************** ***** ****** consensus_5070#0 GGAAGGTGCTCTCAGAGCTTTCTATGCATGAGCCCTACAGCTTCAAGGCACTTGTTGATG 474 consensus_5070#1 GGAAGGTACTTTCAGAGCTGTCGATGCATGAGCCATACAGCTTCAAAGCTCTTGTCGACG 425 ******* ** ******** ** *********** *********** ** ***** ** * consensus_5070#0 TATCCCGCAGTGCATTTCCAGGGAACAGGCCGCCTGTTAAAAAGGAGGGTCTAGCAGCCA 534 consensus_5070#1 TCTCTCGCACTGCATTCCCTGGAAATAGG---CCTGTTAAGAAGGAGGGGCTAGCGAGTA 482 * ** **** ****** ** ** ** *** ******** ******** ***** * consensus_5070#0 TCCTGTGAAATGATTATGTTCAGTCGCACACTGCACTCATGATGGCCGTTGCAACTGAAA 594 consensus_5070#1 TTCTTTAAAACAAACCTCCCCAAGT-CTTGTTACAATCACGTCTG--AATGAAACTGGTA 539 * ** * *** * * ** * * ** *** * * ** ***** * consensus_5070#0 GTTACTACTATTATTGTCTTTTAGCTCAAAGGTGACTCATGTAATTCTCCCTTACCTATA 654 consensus_5070#1 -TTGTTGCCTTCA--GCCTGCAGCCGTACAGGAAACTCAATGGCAGATATTGCATTTGTA 596 ** * * * * * ** * * *** ***** * * * ** consensus_5070#0 TTAAATATTTATGTTATTTTGTGTGATGTTCTCTGTAGCAGGAAACATCTAATTGCATTA 714 consensus_5070#1 ATA-----CTATGTAATTCTGTTTGGAAAGCTGTGGAAGAG-AAACACCTAGTTACATG- 649 ** ***** *** *** ** ** ** * ** ***** *** ** *** consensus_5070#0 TTGTTTATCTGGCCCCTTTCTGTTAGTCTTAT--GGAGAGTGTTATTCCTTTACTGTTGA 772 consensus_5070#1 -TGTTCTTCTTACCTGTTATTGTTGGTTTTTTTTGGATAATGTGCTCTGTTTACC-TTGA 707 **** *** ** ** **** ** ** * *** * *** * ***** **** consensus_5070#0 CAATTTCAGCAACAGTACTATGGATTTGGTCATAATATATGCAAAGAGTCATGA 826 consensus_5070#1 TAAATATAACAG-AATG------------------------------------- 723 ** * * ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||