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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1445 fasta sequence
[TTCAGAGAGAGGAGTCAGTGGCTGTATGCTGCCATGGCTCTCAAGGTGGCTAGATAGACAGACATGTTGCCCATCAACTTAAGAAGCAACTAGCTGCTGCTGCTGCTAAGGGAGAGCTATAGGCTTAGCTGTGGTAGGCTATAGATATTACTATTAGGTAGCTACTAGCCTATAGGCAGACATGGGGAGACCTCCATGCTGCGACAATGGCGTCGGCGTCAAGAAAGGGCCATGGACGCCAGAGGAGGACATCATCCTCGTCTCCTACATCCAGCAGCATGGCCCCGGGAACTGGCGCTCCGTGCCCGAGAACACCGGATTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACTTGAGACCGGGGATCAAGCGTGGCAACTTCACCCCTCATGAGGAGGGGATCATCATCCACCTCCAGGCATTGCTTGGCAACAAGTGGGCAGCAATAGCCTCCTACCTCCCCCAAAGAACAGACAACGACATCAAGAACTACTGGAACACACACCTCAAGAAGAAGGTGAAGAGGCTGCAACAACAACAACAATCACACCCTGATCATCATCACCACCATTCCTTCCAAACCACCCCTTCTTCCTCCAATGCAGCAGCAGTAGCAACAACCAGCCCAAACTACTACAACCCTAACAACAGCAACAGCAACAGCAGCAATTACCTCCATAACAACAACCACAATCTTGAATCCATGCAATCCATGGCCACTGCACCTAGCAATGAGGCCACCACCATCCCCAAGCTCTTCCAGTTCCAGACATGGATGAAGCCATCACCAGCAACAACATCATCAGCAGCAACAGCTGCTGCAGGTAGCTGCTACAAGCAGGCCATGGCCATGCAGGAGCTCCAAGAGGAGCAAGAGGGCTCTGCTGCTGCTGCTGCAATGGCTTCTTCCATTGATGGCGTCTCCAAGGACCAGGATTATCACATGTGTGCTGTGATCAGTGGTGATGACAAGTCGTCGTCGTCGGAGATGATGACGGCTGCGGCAATGGCCGGCCATGGCGAGGCGGCCACGACGACCTTCTCGCTGCTCGAGAACTGGCTGCTCGACGACATGCCGGGGCAGGCGGCCATGAGCGCCGCCATGGATGGGTTCTTGGAGATCTCTGCTGGATACTGCTGTGCAGACCCTATCATGTTCTGAACTTTCTGAACTTCTGATGATCATCTCAGCCTTAATTTCCCATATGAGTCTCTCTTTGCTATAGGTTTCTTAATTTCACTGAGTTAATTTGCACTTGTACTAGCTGTTTGATGCTCTCTCTCTCTCGATGATCTTGTGTTTCCGGTAATAAACCGTTGGTTTAATTTCCTCAAGAAAAAGCAATCCACCTGGAAATAATCTGGTTGGTTTGGAGAAATATTGTCAGTTCTCAAGGATGTAATAAAAGGATTAAAGCTGCCATAATTCGTTG]
[+] EMBL AK110844 [TTCAGAGAGAGGAGTCAGTGGCTGTATGCTGCCATGGCTCTCAAGGTGGCTAGATAGACAGACATGTTGCCCATCAACTTAAGAAGCAACTAGCTGCTGCTGCTGCTAAGGGAGAGCTATAGGCTTAGCTGTGGTAGGCTATAGATATTACTATTAGGTAGCTACTAGCCTATAGGCAGACATGGGGAGACCTCCATGCTGCGACAATGGCGTCGGCGTCAAGAAAGGGCCATGGACGCCAGAGGAGGACATCATCCTCGTCTCCTACATCCAGCAGCATGGCCCCGGGAACTGGCGCTCCGTGCCCGAGAACACCGGATTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAACTACTTGAGACCGGGGATCAAGCGTGGCAACTTCACCCCTCATGAGGAGGGGATCATCATCCACCTCCAGGCATTGCTTGGCAACAAGTGGGCAGCAATAGCCTCCTACCTCCCCCAAAGAACAGACAACGACATCAAGAACTACTGGAACACACACCTCAAGAAGAAGGTGAAGAGGCTGCAACAACAACAACAATCACACCCTGATCATCATCACCACCATTCCTTCCAAACCACCCCTTCTTCCTCCAATGCAGCAGCAGTAGCAACAACCAGCCCAAACTACTACAACCCTAACAACAGCAACAGCAACAGCAGCAATTACCTCCATAACAACAACCACAATCTTGAATCCATGCAATCCATGGCCACTGCACCTAGCAATGAGGCCACCACCATCCCCAAGCTCTTCCAGTTCCAGACATGGATGAAGCCATCACCAGCAACAACATCATCAGCAGCAACAGCTGCTGCAGGTAGCTGCTACAAGCAGGCCATGGCCATGCAGGAGCTCCAAGAGGAGCAAGAGGGCTCTGCTGCTGCTGCTGCAATGGCTTCTTCCATTGATGGCGTCTCCAAGGACCAGGATTATCACATGTGTGCTGTGATCAGTGGTGATGACAAGTCGTCGTCGTCGGAGATGATGACGGCTGCGGCAATGGCCGGCCATGGCGAGGCGGCCACGACGACCTTCTCGCTGCTCGAGAACTGGCTGCTCGACGACATGCCGGGGCAGGCGGCCATGAGCGCCGCCATGGATGGGTTCTTGGAGATCTCTGCTGGATACTGCTGTGCAGACCCTATCATGTTCTGAACTTTCTGAACTTCTGATGATCATCTCAGCCTTAATTTCCCATATGAGTCTCTCTTTGCTATAGGTTTCTTAATTTCACTGAGTTAATTTGCACTTGTACTAGCTGTTTGATGCTCTCTCTCTCTCGATGATCTTGTGTTTCCGGTAATAAACCGTTGGTTTAATTTCCTCAAGAAAAAGCAATCCACCTGGAAATAATCTGGTTGGTTTGGAGAAATATTGTCAGTTCTCAAGGATGTAATAAAAGGATTAAAGCTGCCATAATTCGTTG]
[-] EMBL CB633767 [ AGTAGCAACAACCAGCCCAAACTACTACAACCCTAACAATAGCAACAGCAACAGCAGCAATTACCTCCATAACAACAACCACAATCTTGAATCCATGCAATCCATGGCCACTGCACCTAGCAATGAGGCCACCACCATCCCCAAGCTCTTCCAGTTCCAGACATGGATGAAGCCATCACCAGCAACAACATCATCAGCAGCAACAGCTGCTGCAGGTAGCTGCTACAAGCAGGCCATGGCCATGCAGGAGCTCCAAGAGGAGCAAGAGGGCTCTGCTGCTGCTGCTGCAATGGCTTCTTCCATTGATGGCGTCTCCAAGGACCAGGATTATCACATGTGTGCTGTGATCAGTGGTGATGACAAGTCGTCGTCGTCGGAGATGATGACGGCTGCGGCAATGGCCGGCCACGGCGAGGCGGCCACGACGACCTTCTCGCTGCTCGAGAACTGGCTGCTCGACGACATGCCGGGGCAGGCGGCCATGAGCGCCGCCATGGATGGGTTCTTGGAGATCTCTGCTGGATACTGCTGTGCAGACCCTATCATGTTCTGAACTTTCTGAACTTCTGATGATCATCTCAGCCTTAATTTCCCATATGAGTCTCTCTTTGCTATAGGTTTCTTAATTTCACTGAGTTAATTTGCACTTGTACTAGCTGTTTGATGCTCTCTCTCTCTCGATGATCTTGTGCTTCCGGTAATAAACCGTTGGTTTAATTTCCTCAAGAAAAAGCAATCCACCTGGAAATAATCTGGTTGGTTTGGAGAAATATTGTCAGTTCTCAAGGATGTAATAAAGGGATTAA ]
consensusID : consensus_5071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence
[CATGTTGCCCATCAACTTAAGAAGCAACTAGCTGCTGCTGCTGCTAAGGGAGAGCTATAGGCTTAGCTGTGGTAGGCTATAGATATTACTATTAGGTAGCTACTAGCCTATAGGCAGACATGGGGAGACCTCCATGCTGCGACAATGGCGTCGGCGTCAAGAAAGGGCCATGGACGCCAGAGGAGGACATCATCCTCGTCTCCTACATCCAGCAGCATGGCCCCGGGAACTGGCGCTCCGTGCCCGAGAACACCGGATTGATGAGGTGCAGCAAGAGCTGTAGGCTGCGGTGGACGAACTACTTGAGACCGGGGATCAAGCGTGGCAACTTCACCCCTCATGAGGAGGGGATCATCATCCACCTCCAGGCATTACTTGGCAACAAGTAATCACGTACATAACTCAATTTAAATAAATTGTTGTATCATATACATGAGCATCAAAATCTAATGGGATGTTTTTAGTTTATTTTCTATCCTTGAAGAGGTATATATACATCCGTACCACTCCGAGATAAAAAAAATGTAAATCAGTTGAACTGATTAGAATTGACATTGTTAGAATTTTCCTGGTTCTTGGGATGAATAAAATGTTTACTTTTATATGTGAATCTAGATGTAGATTATGTCCAGATTCATTTAAAAAATAGACTTATTTTATAACGGAGGGAGCATATAACCTCATAGTTTTACACGTAAGGTACATACCTCCTAACTAATACTCATACCTCTTAAAGATTGAAGAAAACGCCAACAAATATATAGGTGAACTCCCAATCCTACTCTCATTTGTTATGATATTGGTTTTGGTACATCACTTCACAGATCTTATATACC]
[+] EMBL CB633768 [CATGTTGCCCATCAACTTAAGAAGCAACTAGCTGCTGCTGCTGCTAAGGGAGAGCTATAGGCTTAGCTGTGGTAGGCTATAGATATTACTATTAGGTAGCTACTAGCCTATAGGCAGACATGGGGAGACCTCCATGCTGCGACAATGGCGTCGGCGTCAAGAAAGGGCCATGGACGCCAGAGGAGGACATCATCCTCGTCTCCTACATCCAGCAGCATGGCCCCGGGAACTGGCGCTCCGTGCCCGAGAACACCGGATTGATGAGGTGCAGCAAGAGCTGTAGGCTGCGGTGGACGAACTACTTGAGACCGGGGATCAAGCGTGGCAACTTCACCCCTCATGAGGAGGGGATCATCATCCACCTCCAGGCATTACTTGGCAACAAGTAATCACGTACATAACTCAATTTAAATAAATTGTTGTATCATATACATGAGCATCAAAATCTAATGGGATGTTTTTAGTTTATTTTCTATCCTTGAAGAGGTATATATACATCCGTACCACTCCGAGATAAAAAAAATGTAAATCAGTTGAACTGATTAGAATTGACATTGTTAGAATTTTCCTGGTTCTTGGGATGAATAAAATGTTTACTTTTATATGTGAATCTAGATGTAGATTATGTCCAGATTCATTTAAAAAATAGACTTATTTTATAACGGAGGGAGCATATAACCTCATAGTTTTACACGTAAGGTACATACCTCCTAACTAATACTCATACCTCTTAAAGATTGAAGAAAACGCCAACAAATATATAGGTGAACTCCCAATCCTACTCTCATTTGTTATGATATTGGTTTTGGTACATCACTTCACAGATCTTATATACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5071#0 TTCAGAGAGAGGAGTCAGTGGCTGTATGCTGCCATGGCTCTCAAGGTGGCTAGATAGACA 60
consensus_5071#1 ------------------------------------------------------------
consensus_5071#0 GACATGTTGCCCATCAACTTAAGAAGCAACTAGCTGCTGCTGCTGCTAAGGGAGAGCTAT 120
consensus_5071#1 --CATGTTGCCCATCAACTTAAGAAGCAACTAGCTGCTGCTGCTGCTAAGGGAGAGCTAT 58
**********************************************************
consensus_5071#0 AGGCTTAGCTGTGGTAGGCTATAGATATTACTATTAGGTAGCTACTAGCCTATAGGCAGA 180
consensus_5071#1 AGGCTTAGCTGTGGTAGGCTATAGATATTACTATTAGGTAGCTACTAGCCTATAGGCAGA 118
************************************************************
consensus_5071#0 CATGGGGAGACCTCCATGCTGCGACAATGGCGTCGGCGTCAAGAAAGGGCCATGGACGCC 240
consensus_5071#1 CATGGGGAGACCTCCATGCTGCGACAATGGCGTCGGCGTCAAGAAAGGGCCATGGACGCC 178
************************************************************
consensus_5071#0 AGAGGAGGACATCATCCTCGTCTCCTACATCCAGCAGCATGGCCCCGGGAACTGGCGCTC 300
consensus_5071#1 AGAGGAGGACATCATCCTCGTCTCCTACATCCAGCAGCATGGCCCCGGGAACTGGCGCTC 238
************************************************************
consensus_5071#0 CGTGCCCGAGAACACCGGATTGATGAGGTGCAGCAAGAGCTGCAGGCTGCGGTGGACGAA 360
consensus_5071#1 CGTGCCCGAGAACACCGGATTGATGAGGTGCAGCAAGAGCTGTAGGCTGCGGTGGACGAA 298
****************************************** *****************
consensus_5071#0 CTACTTGAGACCGGGGATCAAGCGTGGCAACTTCACCCCTCATGAGGAGGGGATCATCAT 420
consensus_5071#1 CTACTTGAGACCGGGGATCAAGCGTGGCAACTTCACCCCTCATGAGGAGGGGATCATCAT 358
************************************************************
consensus_5071#0 CCACCTCCAGGCATTGCTTGGCAACAAGTGGGCAGCAATAGCCTCCTACCTCCCCCAAAG 480
consensus_5071#1 CCACCTCCAGGCATTACTTGGCAACAAGTAATCA----------CGTACATAACTCAATT 408
*************** ************* ** * *** * * ***
consensus_5071#0 AACAGACAACGACATCAAGAACTACTGGAACACACACCTCAAGAAGAAGGTGAAGAGGCT 540
consensus_5071#1 TAAATA-------------AATTGTTGTATCATATACATGAGCATCAAAATCTAATGG-- 453
* * * ** * ** * ** * ** * * * ** * * **
consensus_5071#0 GCAACAACAACAACAATCACACCCTGATCATCATCACCACCATTCCTTCCAAACCACCCC 600
consensus_5071#1 -----------GATGTTTTTAGTTTATTTTCTATCCTTGAAGAGGTATATATACA--TCC 500
* * * * * *** * * ** **
consensus_5071#0 TTCTTCCTCCAATGCAGCAGCAGTAGCAACAACCAGCCCAAACTACTACAACCCTAACAA 660
consensus_5071#1 GTACCACTCCGAGATAAAAAAAAT-GTAA--ATCAGTTGAACTGATTAGAATT------- 550
* **** * * * * * * ** * *** ** * ** **
consensus_5071#0 CAGCAACAGCAACAGCAGCAATTACCTCCATAACAACAACCACAATCTTGAATCCATGCA 720
consensus_5071#1 ----GACATTGTTAGAATTTTCCTGGTTCTTGG-GATGAATAAAATGTTTACTTTT---- 601
*** ** * * * * * * * *** ** * *
consensus_5071#0 ATCCATGGCCACTGCACCTAGCAATGAGGCCACCACCATCCCCAAGCTCTTCCAGTTCCA 780
consensus_5071#1 ATATGTGAAT-CTAGATGTAG-ATTATGTCCAGATTCATTTAAAAAATAGACTTATTTTA 659
** ** ** * *** * * * *** *** ** * * ** *
consensus_5071#0 GACATGGATGAAGC-CATCACCAGCAACAACATCATCAGCAGCAACAGCTGCTGCAGGTA 839
consensus_5071#1 TA-ACGGAGGGAGCATATAACC--TCATAGTTTTACACGTAA-GGTACATACCTC--CTA 713
* * *** * *** ** *** * * * * * * * * * * **
consensus_5071#0 GCTGCTACAAGCAGGCCATGGCCATGCAGGAG--CTCCAAGAGGAGCAAGAGGGCTCTGC 897
consensus_5071#1 ACTAATACTCATACCTCTTAAAGATTGAAGAAAACGCCAACAAATATATAGGTGAACTCC 773
** *** * * * ** * ** * **** * * * * ** *
consensus_5071#0 TGCTGCTGCTGCAATGGCTTCTTCCATTGATGGCGTCTCCAAGGACCAGGATTATCACAT 957
consensus_5071#1 CAATCCTACTCTCATTTGTTATGATATTGGTTTTGGTACATCACTTCACAGATCTTATAT 833
* ** ** ** ** * **** * * * ** * * * **
consensus_5071#0 GTGTGCTGTGATCAGTGGTGATGACAAGTCGTCGTCGTCGGAGATGATGACGGCTGCGGC 1017
consensus_5071#1 ACC--------------------------------------------------------- 836
consensus_5071#0 AATGGCCGGCCATGGCGAGGCGGCCACGACGACCTTCTCGCTGCTCGAGAACTGGCTGCT 1077
consensus_5071#1 ------------------------------------------------------------
consensus_5071#0 CGACGACATGCCGGGGCAGGCGGCCATGAGCGCCGCCATGGATGGGTTCTTGGAGATCTC 1137
consensus_5071#1 ------------------------------------------------------------
consensus_5071#0 TGCTGGATACTGCTGTGCAGACCCTATCATGTTCTGAACTTTCTGAACTTCTGATGATCA 1197
consensus_5071#1 ------------------------------------------------------------
consensus_5071#0 TCTCAGCCTTAATTTCCCATATGAGTCTCTCTTTGCTATAGGTTTCTTAATTTCACTGAG 1257
consensus_5071#1 ------------------------------------------------------------
consensus_5071#0 TTAATTTGCACTTGTACTAGCTGTTTGATGCTCTCTCTCTCTCGATGATCTTGTGTTTCC 1317
consensus_5071#1 ------------------------------------------------------------
consensus_5071#0 GGTAATAAACCGTTGGTTTAATTTCCTCAAGAAAAAGCAATCCACCTGGAAATAATCTGG 1377
consensus_5071#1 ------------------------------------------------------------
consensus_5071#0 TTGGTTTGGAGAAATATTGTCAGTTCTCAAGGATGTAATAAAAGGATTAAAGCTGCCATA 1437
consensus_5071#1 ------------------------------------------------------------
consensus_5071#0 ATTCGTTG 1445
consensus_5071#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||