These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence [CGACGACATCCATCCACAGCCAGAGCGCGGCGGATGCGATGGCCACCGAAGAAGAAAACTTCGTCGATGATGATGCCGACGTGAAGTCGATGTCGTCCTCGTCGTCGTTGTCGTCGCTCTTTGACCTCGACCTCACTGCGTTCGGCGACCGGTGGGTGGTGTCGGGAGGAAAGGAGGAGGTTGATTTTGCTGGTGCCGATGATGGTGGTGGCGGGGCGGTGAACGTGGCGTCCGACGAGGACGAAGATGGTCGCGGCGGCGGCGTGGCGGCGGCGCTCGGGCCGGCTGCTAGGCTCCGCGAGCTTCTTCTTCGCAAGCTGAGGAAGCCGAAGGCGGCCGGCGGCGGTGGCGCGGTGTCGCCGGAGGGACGGAGCGGCCGATTCTTGGCGAAGGTCCGGGCGGACTCGATGCCGCGGCTGGAGGCGCGCGCGATCGCCGG-CGGCGAGGAGGAGCGGCGCGCCGCCACTACTACTAACCCGAAGGAGGCCGCACGGAAGTACCTGAACAAGATCGCGACGAGCCTCGCGCGCCGCCGCGGAGGTCCAGACCCAGCAGCAATGGTGGTCGCTGCCCCGACGACGACCGGCAAGACGAAGACGAGCCGCTCCTCCATGGCGGCGCCGCCGCCGCCGCGCCGCGGTATAGACGGCTCGGCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCGCACTGCAAGCTCTCGCTGCGCACGGCGACGGCAGAGCCGAGCTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCATGATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTGCCAAATAATCGCATTCGTTTTTCATTAAAAAAAAAA] [+] EMBL AK108327 [CGACGACATCCATCCACAGCCAGAGCGCGGCGGATGCGATGGCCACCGAAGAAGAAAACTTCGTCGATGATGATGCCGACGTGAAGTCGATGTCGTCCTCGTCGTCGTTGTCGTCGCTCTTTGACCTCGACCTCACTGCGTTCGGCGACCGGTGGGTGGTGTCGGGAGGAAAGGAGGAGGTTGATTTTGCTGGTGCCGATGATGGTGGTGGCGGGGCGGTGAACGTGGCGTCCGACGAGGACGAAGATGGTCGCGGCGGCGGCGTGGCGGCGGCGCTCGGGCCGGCTGCTAGGCTCCGCGAGCTTCTTCTTCGCAAGCTGAGGAAGCCGAAGGCGGCCGGCGGCGGTGGCGCGGTGTCGCCGGAGGGACGGAGCGGCCGATTCTTGGCGAAGGTCCGGGCGGACTCGATGCCGCGGCTGGAGGCGCGCGCGATCGCCGG CGGCGAGGAGGAGCGGCGCGCCGCCACTACTACTAACCCGAAGGAGGCCGCACGGAAGTACCTGAACAAGATCGCGACGAGCCTCGCGCGCCGCCGCGGAGGTCCAGACCCAGCAGCAATGGTGGTCGCTGCCCCGACGACGACCGGCAAGACGAAGACGAGCCGCTCCTCCATGGCGGCGCCGCCGCCGCCGCGCCGCGGTATAGACGGCTCGGCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCGCACTGCAAGCTCTCGCTGCGCACGGCGACGGCAGAGCCGAGCTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCATGATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTGCCAAATAATCGCATTCGTTTTTCATTAAA ] [+] EMBL BI798916 [ GCAA CTGAG A CCGAA GC GCC GC GCGGTGGC C GT TC CCGGAGGGACAGAGC GCCGATTCTT GCGAAGGTCC GGCGGACTCGAT CC CGGCTGGAGGCGCGCGCGATCGCCGGTCGGCGAGGAGGA CGGCGC CCGCCACTACTACTAACCCGAAGGAGGCCGCACGGAAGTACCTGAACAAGATCGCGACGAGCCTCGCGC CCGCCGCGGAGGTCCAGACCCAGCAGCAATGGTGGTCGCTGCCCCGACGACGACCGGCAAGACGAAGACGAGCCGCTCCTCCATGGCGGCGCCGCCGCCGCCGCGCCGCGGTACAGACGGCTCGGCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCGCACTGCAAGCTCTCGCTGCGCACGGCGACGGCAGAGCCGAGCTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCATGATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTGCC AATAATCGCATTCGTTTTTCATTAAAAAAAAAA] consensusID : consensus_5078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [NCTGNTGCTTGTGNANCGGTGNTTNNATGNTCNGCGAGCGCCGCGNTNATAGACGGCTCGGCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCATCTNGCAAGCTCTCGCTGCGCACGGCACGGCAGAGCAGCGTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCATGATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTGCCAAATAATCGCATTCGTTTTTCATTAAAAAAAA] [+] EMBL AU069887 [NCTGNTGCTTGTGNANCGGTGNTTNNATGNTCNGCGAGCGCCGCGNTNATAGACGGCTCGGCCCAGCACTTGCAGGACGGCATCGAGAGCGCCATTGCATCTNGCAAGCTCTCGCTGCGCACGGCACGGCAGAGCAGCGTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCATGATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTGCCAAATAATCGCATTCGTTTTTCATTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5078#0 CGACGACATCCATCCACAGCCAGAGCGCGGCGGATGCGATGGCCACCGAAGAAGAAAACT 60 consensus_5078#1 ------------------------------------------------------------ consensus_5078#0 TCGTCGATGATGATGCCGACGTGAAGTCGATGTCGTCCTCGTCGTCGTTGTCGTCGCTCT 120 consensus_5078#1 ------------------------------------------------------------ consensus_5078#0 TTGACCTCGACCTCACTGCGTTCGGCGACCGGTGGGTGGTGTCGGGAGGAAAGGAGGAGG 180 consensus_5078#1 ------------------------------------------------------------ consensus_5078#0 TTGATTTTGCTGGTGCCGATGATGGTGGTGGCGGGGCGGTGAACGTGGCGTCCGACGAGG 240 consensus_5078#1 ------------------------------------------------------------ consensus_5078#0 ACGAAGATGGTCGCGGCGGCGGCGTGGCGGCGGCGCTCGGGCCGGCTGCTAGGCTCCGCG 300 consensus_5078#1 ------------------------------------------------------------ consensus_5078#0 AGCTTCTTCTTCGCAAGCTGAGGAAGCCGAAGGCGGCCGGCGGCGGTGGCGCGGTGTCGC 360 consensus_5078#1 ------------------------------------------------------------ consensus_5078#0 CGGAGGGACGGAGCGGCCGATTCTTGGCGAAGGTCCGGGCGGACTCGATGCCGCGGCTGG 420 consensus_5078#1 ------------------------------------------------------------ consensus_5078#0 AGGCGCGCGCGATCGCCGGCGGCGAGGAGGAGCGGCGCGCCGCCACTACTACTAACCCGA 480 consensus_5078#1 ------------------------------------------------------------ consensus_5078#0 AGGAGGCCGCACGGAAGTACCTGAACAAGATCGCGACGAGCCTCGCGCGCCGCCGCGGAG 540 consensus_5078#1 ------------------------------------------------------------ consensus_5078#0 GTCCAGACCCAGCAGCAATGGTGGTCGCTGCCCCGACGACGACCGGCAAGACGAAGACGA 600 consensus_5078#1 ----------------------------------------------NCTGNTGCTTGTGN 14 * * * consensus_5078#0 GCCGCTCCTCCATGGCGGCGCCGCCGCCGCCGCGCCGCGGTATAGACGGCTCGGCCCAGC 660 consensus_5078#1 ANCGGTGNT---TNNATGNTCNGCGAGCGCCGCGNTN----ATAGACGGCTCGGCCCAGC 67 ** * * * * * ** ******* ******************* consensus_5078#0 ACTTGCAGGACGGCATCGAGAGCGCCATTGCGCACTGCAAGCTCTCGCTGCGCACGGCGA 720 consensus_5078#1 ACTTGCAGGACGGCATCGAGAGCGCCATTGCATCTNGCAAGCTCTCGCTGCGCACGGC-A 126 ******************************* ********************** * consensus_5078#0 CGGCAGAGCCGAGCTAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCAT 780 consensus_5078#1 CGGCAGAGCAGCG-TAAGGAGGAGTGCAAATGTTGAGTCGTTGATGCATGCATGAAGCAT 185 ********* * * ********************************************** consensus_5078#0 GATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTG 840 consensus_5078#1 GATGATGTGTTCCTCGCAGTGAGATTTGATAAAGGCTTTGTTCTTGGCATAGACGAGTTG 245 ************************************************************ consensus_5078#0 CCAAATAATCGCATTCGTTTTTCATTAAAAAAAAAA 876 consensus_5078#1 CCAAATAATCGCATTCGTTTTTCATTAAAAAAAA-- 279 ********************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||