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Oryza sativa
cluster # 5081 cluster # 5081       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5081#0 length = 1722 sequences # 3  

consensusID : consensus_5081#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1722
fasta sequence
                              [CGCCTGCNTAGTGCAGAGTCCAAAGCCTCATGTCTGCAGTGAGCATCGTCGACGTCAGCTATGTNGCTGTGCNGGCGACTGCCGCGCTGCNGCCGGAGCCGATCAAGCTCACGGCGATGGAAGCACTGTGGCTCCCTTTCCCCGTGCTTCAACACGTCCTGTTCTACGAGGTCGCCGGCTCGCCGCCGTTCGACAGCNT-GTCCGGTCCCTCCGGTCCTCCCTCGGCGNNAAGNTGGCGAGTTTNGCGCCGCTCGCNGGCAAGCTCGTTTACNTCGAGGGNACCGGCGACGTCGCCATCGCCTGCTCCGCGTCGGACGCGGTCAAGTTCGTCGCTGCGGAATCCGACGCCGACGTCCGCCGCCTCGCCGGAGACGAGCTGCACGACCTGGCGACGTTTCAGAAGCTTGTGCCGGAGCTCGACATGGGCAAGCTGCCGACGTCGGTGCTGGCCGTGCAGGCCACGCGCCTGGAGGGAGGGCTGGCGGTCGGCGTCACGGTGCATCACGGCGTCGCCGATGGGAAGTCTCTCTGGATGTTCCTGGAGGCGTGGGCGGCGGCGTGCCGCGGCGAGGCGACGCCGGTCGCGACACCGTGCTTCGACCGCTCCGCTATCAAGCTGCACCTTGGCGAGGAGATTGCCCGGACCGTCTTGCGGAAGTACGCGCCTAAATTGCCTCAGGTAGCCGAGCTGGAAATTTTCGTCGAACAACGGAATCGGTTCACCCGCCGGACGTTCACCGTGGACGCGCAGCAAATCGAGCGCCTCAAGCAGCGCATCGCCCGCGACGGTGAAGCCCGCGGCGCGCCACTGCGTCGGCCTCCGTCCACCTTCGTCGCCGTCGTCGCGACGGCATGGACGTGCTTCGCCCGATGCAAGACCACCGCCGCGGACGACGGAGAAGTGTTCCTTGTGTTCATCGCCGACGTCCGCGAGCGCCTCGACCCTCCCGTCGGCGCGGGATACTTCGGCAGTTGCCTGACCGTGCGCGTCGCGAGGCTCCCGGTGCGCGACATCCACGGCGACGGCGCGCTGGCGGCCGCGGCGTCGGCGATCCAGGAGGAGATCGCCAAGGTGGCCGAAGACCCGCTCGCCGGGTGGGATTTCTTGAGGCTGATGGAGACGCTGGTCCCCGTCACGGAGAGGGCGATGAACGTGTCTGGCTCGCCGGCGTTCCGGCCGTACGACGTCGGCGACTTTGGTTGGGGGAAGCCGAGGCGGACGGAGCCGATCAGGATGAACCACGACGGACAGGTGGCGCTGGTGCGCGCCAAGGACGGCCGCGCGGTGCAGGTCTCGGTCTCCTTGCTCCGATCTGCACACATGCAAGGTTTCAAGTCACAATTACTTGAGTTATTGGGATGACAGATACATTCGATTAATTATACTTCCTACTCCTCATTTTAAGTGCAACTATGAGTTTTTGTACCCAACTTTGACAGTCCGTTTTATTCAAAAAAAATTTATAATTAGTATTTTTATTGTTATGAGATGATAAAATATAAATAGTACTTTATACGGGACTTATTTTTTTTATTTTTTTTTCAAAAAAGACGTGCGTTCAAAGTTTGGCACGGAAAATCATGGTTGCCCTTAAATGGAACGGAGGGAGTAGTAATTTTCGCTGCCATATGGACGAGAGAGAGAGAGAGAGCATGTTTAATGAACAGTGCTAAATGATGTGTTTCGTAAAAATGTAAAAGGGACTCCTTCCGTTTTAGGTT]

[+] EMBL OSS12617A            [CGCCTGCNTAGTGCAGAGTCCAAAGCCTCATGTCTGCAGTGAGCATCGTCGACGTCAGCTATGTNGCTGTGCNGGCGACTGCCGCGCTGCNGCCGGAGCCGATCAAGCTCACGGCGATGGAAGCACTGTGGCTCCCTTTCCCCGTGCTTCAACACGTCCTGTTCTACGAGGTCGCCGGCTCGCCGCCGTTCGACAGCNT GTCCGGTCCCTCCGGTCCTCCCTCGGCGNNAAGNTGGCGAGTTTNGCGCCGCTCGCNGGCAAGCTCGTTTACNTCGAGGGNA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK103592             [                 GTCCAAAGCCTCATGTCTGCAGTGAGCATCGTCGACGTCAGCTATGTCGCTGTGCCGGCGACTGCCGCGCTGCCGCCGGAGCCGATCAAGCTCACGGCGATGGAAGCACTGTGGCTCCCTTTCCCCGTGCTTCAACACGTCCTGTTCTACGAGGTCGCCGGCTCGCCGCCGTTCGACAGCGTCGTCCGGTCCCTCCGGTCCTCCCTCGGCGCCACGCTGGCGAGCTTCGCGCCGCTCGCCGGCAAGCTCGTCTACCTCGAGGGCACCGGCGACGTCGCCATCGCCTGCTCCGCGTCGGACGCGGTCAAGTTCGTCGCTGCGGAATCCGACGCCGACGTCCGCCGCCTCGCCGGAGACGAGCTGCACGACCTGGCGACGTTTCAGAAGCTTGTGCCGGAGCTCGACATGGGCAAGCTGCCGACGTCGGTGCTGGCCGTGCAGGCCACGCGCCTGGAGGGAGGGCTGGCGGTCGGCGTCACGGTGCATCACGGCGTCGCCGATGGGAAGTCTCTCTGGATGTTCCTGGAGGCGTGGGCGGCGGCGTGCCGCGGCGAGGCGACGCCGGTCGCGACACCGTGCTTCGACCGCTCCGCTATCAAGCTGCACCTTGGCGAGGAGATTGCCCGGACCGTCTTGCGGAAGTACGCGCCTAAATTGCCTCAGGTAGCCGAGCTGGAAATTTTCGTCGAACAACGGAATCGGTTCACCCGCCGGACGTTCACCGTGGACGCGCAGCAAATCGAGCGCCTCAAGCAGCGCATCGCCCGCGACGGTGAAGCCCGCGGCGCGCCACTGCGTCGGCCTCCGTCCACCTTCGTCGCCGTCGTCGCGACGGCATGGACGTGCTTCGCCCGATGCAAGACCACCGCCGCGGACGACGGAGAAGTGTTCCTTGTGTTCATCGCCGACGTCCGCGAGCGCCTCGACCCTCCCGTCGGCGCGGGATACTTCGGCAGTTGCCTGACCGTGCGCGTCGCGAGGCTCCCGGTGCGCGACATCCACGGCGACGGCGCGCTGGCGGCCGCGGCGTCGGCGATCCAGGAGGAGATCGCCAAGGTGGCCGAAGACCCGCTCGCCGGGTGGGATTTCTTGAGGCTGATGGAGACGCTGGTCCCCGTCACGGAGAGGGCGATGAACGTGTCTGGCTCGCCGGCGTTCCGGCCGTACGACGTCGGCGACTTTGGTTGGGGGAAGCCGAGGCGGACGGAGCCGATCAGGATGAACCACGACGGACAGGTGGCGCTGGTGCGCGCCAAGGACGGCCGCGCGGTGCAGGTCTCGGTCTCCTTGCTCCGATCTGCACACATGCAAGGTTTCAAGTCACAATTACTTGAGTTATTGGGATGACAGATACATTCGATTAATTATACTTCCTACTCCTCATTTTAAGTGCAACTATGAGT                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB681171             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGGCGTCGGCGATCCAGGAGGAGATCGCCAAGGTGGCCGAAGACCCGCTCGCCGGGTGGGATTTTTTGAGGCTGATGGAGACGCTGGTCCCCGTCACGGAGAGGGCGATGAACGTGTTTGGCTCGCCGGCGTTCCGGCCGTACGACGTCGGCGACTTTGGTTGGGGGAAACCGAGGCGGACGGAGCCGATCAGGATGAACCCCGACGGACAGGTGGCGCTGGTGCGCGCCAAGGACGGCCGCGCGGTGCAGGTTTCGGTTTCCTTGCTCCGATTTGCACACATGCAAGGTTTCAAGTCCCAATTACTTGAGTTATTGGGATGACAGATACATTCGATTAATTATACTTCCTACTCCTCATTTTAAGTGCAACTATGAGTTTTTGTACCCAACTTTGACAGTCCGTTTTATTCAAAAAAAATTTATAATTAGTATTTTTATTGTTATGAGATGATAAAATATAAATAGTACTTTATACGGGACTTATTTTTTTTATTTTTTTTTCAAAAAAGACGTGCGTTCAAAGTTTGGCACGGAAAATCATGGTTGCCCTTAAATGGAACGGAGGGAGTAGTAATTTTCGCTGCCATATGGACGAGAGAGAGAGAGAGAGCATGTTTAATGAACAGTGCTAAATGATGTGTTTCGTAAAAATGTAAAAGGGACTCCTTCCGTTTTAGGTT]


>consensus_5081#0 CGCCTGCNTAGTGCAGAGTCCAAAGCCTCATGTCTGCAGTGAGCATCGTCGACGTCAGCT ATGTNGCTGTGCNGGCGACTGCCGCGCTGCNGCCGGAGCCGATCAAGCTCACGGCGATGG AAGCACTGTGGCTCCCTTTCCCCGTGCTTCAACACGTCCTGTTCTACGAGGTCGCCGGCT CGCCGCCGTTCGACAGCNTGTCCGGTCCCTCCGGTCCTCCCTCGGCGNNAAGNTGGCGAG TTTNGCGCCGCTCGCNGGCAAGCTCGTTTACNTCGAGGGNACCGGCGACGTCGCCATCGC CTGCTCCGCGTCGGACGCGGTCAAGTTCGTCGCTGCGGAATCCGACGCCGACGTCCGCCG CCTCGCCGGAGACGAGCTGCACGACCTGGCGACGTTTCAGAAGCTTGTGCCGGAGCTCGA CATGGGCAAGCTGCCGACGTCGGTGCTGGCCGTGCAGGCCACGCGCCTGGAGGGAGGGCT GGCGGTCGGCGTCACGGTGCATCACGGCGTCGCCGATGGGAAGTCTCTCTGGATGTTCCT GGAGGCGTGGGCGGCGGCGTGCCGCGGCGAGGCGACGCCGGTCGCGACACCGTGCTTCGA CCGCTCCGCTATCAAGCTGCACCTTGGCGAGGAGATTGCCCGGACCGTCTTGCGGAAGTA CGCGCCTAAATTGCCTCAGGTAGCCGAGCTGGAAATTTTCGTCGAACAACGGAATCGGTT CACCCGCCGGACGTTCACCGTGGACGCGCAGCAAATCGAGCGCCTCAAGCAGCGCATCGC CCGCGACGGTGAAGCCCGCGGCGCGCCACTGCGTCGGCCTCCGTCCACCTTCGTCGCCGT CGTCGCGACGGCATGGACGTGCTTCGCCCGATGCAAGACCACCGCCGCGGACGACGGAGA AGTGTTCCTTGTGTTCATCGCCGACGTCCGCGAGCGCCTCGACCCTCCCGTCGGCGCGGG ATACTTCGGCAGTTGCCTGACCGTGCGCGTCGCGAGGCTCCCGGTGCGCGACATCCACGG CGACGGCGCGCTGGCGGCCGCGGCGTCGGCGATCCAGGAGGAGATCGCCAAGGTGGCCGA AGACCCGCTCGCCGGGTGGGATTTCTTGAGGCTGATGGAGACGCTGGTCCCCGTCACGGA GAGGGCGATGAACGTGTCTGGCTCGCCGGCGTTCCGGCCGTACGACGTCGGCGACTTTGG TTGGGGGAAGCCGAGGCGGACGGAGCCGATCAGGATGAACCACGACGGACAGGTGGCGCT GGTGCGCGCCAAGGACGGCCGCGCGGTGCAGGTCTCGGTCTCCTTGCTCCGATCTGCACA CATGCAAGGTTTCAAGTCACAATTACTTGAGTTATTGGGATGACAGATACATTCGATTAA TTATACTTCCTACTCCTCATTTTAAGTGCAACTATGAGTTTTTGTACCCAACTTTGACAG TCCGTTTTATTCAAAAAAAATTTATAATTAGTATTTTTATTGTTATGAGATGATAAAATA TAAATAGTACTTTATACGGGACTTATTTTTTTTATTTTTTTTTCAAAAAAGACGTGCGTT CAAAGTTTGGCACGGAAAATCATGGTTGCCCTTAAATGGAACGGAGGGAGTAGTAATTTT CGCTGCCATATGGACGAGAGAGAGAGAGAGAGCATGTTTAATGAACAGTGCTAAATGATG TGTTTCGTAAAAATGTAAAAGGGACTCCTTCCGTTTTAGGTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)