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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 823 fasta sequence
[CAGTCCAAAAGATCTGAATATGGTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACAAATGATGCTCGATCTGTGCAATCGACATGTGCTGGCCTCACAATCCCAACATGGATCCAAGGCAACGAACAAAAGAAGAGCAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAACGCCATCCATGCATATCTACCACTGAAGATGGCAATGCTCTCTATTGTCTATTCCTTCCTCATATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATGCTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGAGCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGGCAGTCATCCCATTGTCCATGCTCCCTTGCTTCCCAGTAACCGCCTTTGAAGCGATATGTCCCGTCTTCGCCATCCTTCTGGAACCATCTCGGCTTCCAGCCATTGTCTTGAAGCTTACTCGACATTCTTTGTCGTCGTTCCAACCTCAGCTTCTCCGCGTTTGCCTTCTCATATTCACCGTTCTCTAGATGCCGCTGGTCTGGCCTTAGCCGTGAATCAGTAGGAGGGAGTTTGTCCTGAAGATCAGGAGACAGTTCGTTCAATGTGATAGCGAACGACGATAGATTGTATCGCGTTGGATTAGGAGAAGGTTTGTTCTTTTCCCACAGAAGTACGGCACCTTTCAATTGATCAACGCTCTTGACC]
[+] EMBL CB628484 [CAGTCCAAAAGATCTGAATATGGTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACAAATGATGCTCGATCTGTGCAATCGACATGTGCTGGCCTCACAATCCCAACATGGATCCAAGGCAACGAACAAAAGAAGAGCAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAACGCCATCCATGCATATCTACCACTGAAGATGGCAATGCTCTCTATTGTCTATTCCTTCCTCATATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATGCTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGAGCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGGCAGTCATCCCATTGTCCATGCTCCCTTGCTTCCCAGTAACCGCCTTTGAAGCGATATGTCCCGTCTTCGCCATCCTTCTGGAACCATCTCGGCTTCCAGCCATTGTCTTGAAGCTTACTCGACATTCTTTGTCGTCGTTCCAACCTCAGCTTCTCCGCGTTTGCCTTCTCATATTCACCGTTCTCTAGATGCCGCTGGTCTGGCCTTAGCCGTGAATCAGTAGGAGGGAGTTTGTCCTGAAGATCAGGAGACAGTTCGTTCAATGTGATAGCGAACGACGATAGATTGTATCGCGTTGGATTAGGAGAAGGTTTGTTCTTTTCCCACAGAAGTACGGCACCTTTCAATTGATCAACGCTCTTGACC]
[+] EMBL CA756588 [ CATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACAAATGATGCTCGATCTGTGCAATCGACATGTGCTGGCCTCACAATCCCAACATGGATCCAAGGCAACGAACAAAAGAAGAGCAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAAAGCCATCCATGCATATCTACCACTGAAGATGGCAATGCTCTATATTGTCTATTCCTTCCTCATATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATGCTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGAGCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGG ]
consensusID : consensus_5084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[TTTTTTTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACCAAATGATGCTCGATCTGTGCAATCGAATGTGCTGGCCTCACAATCCCAACCATGGCATCCCACAGGCCAACCGCAACCAACACAGCAAGCAGCAACATTCATTCACGCAATCAATTGTTCCAGGCAACATGCAGCTCATATCACACCAGCCCGGTAACCCAACGCCCATCCACATGCATATCTCACCACATGATAGCATGGCAAGCTCCTCTCATNNGTCTCATTCCTTCCTCCATTATTCATTTGCATNGCCATTTGCCATTGCATGTCCCTTGGTTTTCCTCATGGCAGGGACACACACACCCTTGCAACAGTTGCTTTCCAGCAGTTCCCACANCGTGCAAACTTGCGNGTTNGGTCTAAACTGCCTACTAAACAAGCAAGTGCAAACCCTGAGGCCATNNCATCCATGTCTTCCTGAAACACCTCACTCAAATATATGTCTAAAGGCCNAGTCATNCACATGGTNCCAATGCCTCCCCTTGCTTTCCCAGGTANCCGCCATTTGGNAGACGATNTGGTCCCGAGATCTNCGNCCAACTCATTCGTGGACAANCACTCCTTGGGTTTCACGCATGGTTTGAAAGCGTTAATTCNAAAATACATGGCGAAGTCCC]
[-] EMBL BI807259 [TTTTTTTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACCAAATGATGCTCGATCTGTGCAATCGAATGTGCTGGCCTCACAATCCCAACCATGGCATCCCACAGGCCAACCGCAACCAACACAGCAAGCAGCAACATTCATTCACGCAATCAATTGTTCCAGGCAACATGCAGCTCATATCACACCAGCCCGGTAACCCAACGCCCATCCACATGCATATCTCACCACATGATAGCATGGCAAGCTCCTCTCATNNGTCTCATTCCTTCCTCCATTATTCATTTGCATNGCCATTTGCCATTGCATGTCCCTTGGTTTTCCTCATGGCAGGGACACACACACCCTTGCAACAGTTGCTTTCCAGCAGTTCCCACANCGTGCAAACTTGCGNGTTNGGTCTAAACTGCCTACTAAACAAGCAAGTGCAAACCCTGAGGCCATNNCATCCATGTCTTCCTGAAACACCTCACTCAAATATATGTCTAAAGGCCNAGTCATNCACATGGTNCCAATGCCTCCCCTTGCTTTCCCAGGTANCCGCCATTTGGNAGACGATNTGGTCCCGAGATCTNCGNCCAACTCATTCGTGGACAANCACTCCTTGGGTTTCACGCATGGTTTGAAAGCGTTAATTCNAAAATACATGGCGAAGTCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5084#0 CAGTCCAAAAGATCTGAATATGGTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCT 60
consensus_5084#1 -----------------TTTTTTTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCT 43
* * *************************************
consensus_5084#0 TTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTAC-AAATGATGCTCGATCTGTGCAAT 119
consensus_5084#1 TTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACCAAATGATGCTCGATCTGTGCAAT 103
************************************ ***********************
consensus_5084#0 CGACATGTGCTGGCCTCACAATCCCAAC-ATGG-ATCCAAGGCAACGAACAAAAGAAGAG 177
consensus_5084#1 CGA-ATGTGCTGGCCTCACAATCCCAACCATGGCATCCCACAGGCCAACCGCAACCAACA 162
*** ************************ **** **** * * * * ** *
consensus_5084#0 CAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAACGCC 237
consensus_5084#1 CAGCA--AGCAGCAACATTCATTCACGCAATCAATTGTT-----CCAGGCAAC--ATGCA 213
** ** * * ** * * **** * *** * * * ** ** *** * **
consensus_5084#0 ATCCATG-CATATCTACCACTGAAGATGGCAATGCTCTCTATTGTCTATTCCTTCCTCAT 296
consensus_5084#1 GCTCATATCACACCAGCCCGGTAACCCAACGCCCATCCACAT-GCATATCTCACCACATG 272
*** ** * * ** ** * ** ** * *** * *
consensus_5084#0 ATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATG 356
consensus_5084#1 ATAGCATGGCAAGCTCCTCTCATNNGTCTCATTCCTTCCTCCATTATTCATTTGCATNGC 332
** **** *** * *** * ** ** *** * * ****
consensus_5084#0 CTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGA 416
consensus_5084#1 CAT-----TTGCCATTGCATGTCCCTTGGTTTTCCTCATGGCAGGGACACACACACCCTT 387
* * ** * * ** * * * * * * * * * ** ***
consensus_5084#0 GCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGGCAGTCATCCCATTGTCCAT 476
consensus_5084#1 GCAACAGTTGC-TTTCCAGCAGTTCCCACANCGTGCAAACTTGCGNGTT---NGGTCTAA 443
*** * * ** * **** * ** ** * *** *
consensus_5084#0 GCTCCCTTGCTTCCCAGTAACCGCCTTTGAAGCGATATGTCCCGTCTTCGCCATCCTTCT 536
consensus_5084#1 ACTGCCTA----CTAAACAAGCAAGTGCAAACCCTGAGGCCATNNCATCCATGTCTTCCT 499
** *** * * ** * * ** * * * * * ** ** * **
consensus_5084#0 GGAACCATCTCGGCTTCCAGCCATTGTCTTGAAGCTTACTCGACATTCTTTGTCGTCGTT 596
consensus_5084#1 GAAAC-ACCTCA--CTCAAATATATGTCTAAAGGCCNAGTCA-------TNCACATGGTN 549
* *** * *** ** * ***** * ** * ** * * * **
consensus_5084#0 CCAACCTCAGCTTCTCCGCGTTTGCCTTCTCATATTCACCGTTCTCTAGATGCCGCTGGT 656
consensus_5084#1 CCAAT----GCCTCCCCTTGCTTTCC--CAGGTANCCGCCATTTGGNAGACGATNTGGTC 603
**** ** ** ** * ** ** * ** * ** ** *** * *
consensus_5084#0 CTGGCCTTAGCCGTGAA-TCAGTAGGAGGGAGTTTGTCCTGAAGATCAGGAGACAGTTCG 715
consensus_5084#1 CCGAGATCTNCGNCCAACTCATTCGTGGACAANCACTCCTTGGGTTTCACGCATGGTTTG 663
* * * * ** *** * * * * **** * * * *** *
consensus_5084#0 TTCAATGTGATAGCGAACGACGATAGATTGTATCGCGTTGGATTAGGAGAAGGTTTGTTC 775
consensus_5084#1 ---AAAGCGTTAATT--CNAAAATACATGGCGAAGTCCC--------------------- 697
** * * ** * * *** ** * *
consensus_5084#0 TTTTCCCACAGAAGTACGGCACCTTTCAATTGATCAACGCTCTTGACC 823
consensus_5084#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||