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Oryza sativa
cluster # 5084 cluster # 5084       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5084#0 length = 823 sequences # 2  
consensus_5084#1 length = 697 sequences # 1  

consensusID : consensus_5084#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 823
fasta sequence
                              [CAGTCCAAAAGATCTGAATATGGTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACAAATGATGCTCGATCTGTGCAATCGACATGTGCTGGCCTCACAATCCCAACATGGATCCAAGGCAACGAACAAAAGAAGAGCAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAACGCCATCCATGCATATCTACCACTGAAGATGGCAATGCTCTCTATTGTCTATTCCTTCCTCATATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATGCTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGAGCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGGCAGTCATCCCATTGTCCATGCTCCCTTGCTTCCCAGTAACCGCCTTTGAAGCGATATGTCCCGTCTTCGCCATCCTTCTGGAACCATCTCGGCTTCCAGCCATTGTCTTGAAGCTTACTCGACATTCTTTGTCGTCGTTCCAACCTCAGCTTCTCCGCGTTTGCCTTCTCATATTCACCGTTCTCTAGATGCCGCTGGTCTGGCCTTAGCCGTGAATCAGTAGGAGGGAGTTTGTCCTGAAGATCAGGAGACAGTTCGTTCAATGTGATAGCGAACGACGATAGATTGTATCGCGTTGGATTAGGAGAAGGTTTGTTCTTTTCCCACAGAAGTACGGCACCTTTCAATTGATCAACGCTCTTGACC]

[+] EMBL CB628484             [CAGTCCAAAAGATCTGAATATGGTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACAAATGATGCTCGATCTGTGCAATCGACATGTGCTGGCCTCACAATCCCAACATGGATCCAAGGCAACGAACAAAAGAAGAGCAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAACGCCATCCATGCATATCTACCACTGAAGATGGCAATGCTCTCTATTGTCTATTCCTTCCTCATATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATGCTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGAGCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGGCAGTCATCCCATTGTCCATGCTCCCTTGCTTCCCAGTAACCGCCTTTGAAGCGATATGTCCCGTCTTCGCCATCCTTCTGGAACCATCTCGGCTTCCAGCCATTGTCTTGAAGCTTACTCGACATTCTTTGTCGTCGTTCCAACCTCAGCTTCTCCGCGTTTGCCTTCTCATATTCACCGTTCTCTAGATGCCGCTGGTCTGGCCTTAGCCGTGAATCAGTAGGAGGGAGTTTGTCCTGAAGATCAGGAGACAGTTCGTTCAATGTGATAGCGAACGACGATAGATTGTATCGCGTTGGATTAGGAGAAGGTTTGTTCTTTTCCCACAGAAGTACGGCACCTTTCAATTGATCAACGCTCTTGACC]
[+] EMBL CA756588             [                                                 CATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACAAATGATGCTCGATCTGTGCAATCGACATGTGCTGGCCTCACAATCCCAACATGGATCCAAGGCAACGAACAAAAGAAGAGCAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAAAGCCATCCATGCATATCTACCACTGAAGATGGCAATGCTCTATATTGTCTATTCCTTCCTCATATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATGCTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGAGCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGG                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_5084#0 CAGTCCAAAAGATCTGAATATGGTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCT TTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACAAATGATGCTCGATCTGTGCAATC GACATGTGCTGGCCTCACAATCCCAACATGGATCCAAGGCAACGAACAAAAGAAGAGCAA CATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAACGCCATC CATGCATATCTACCACTGAAGATGGCAATGCTCTCTATTGTCTATTCCTTCCTCATATTG CATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATGCTTC AGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGAGCAT TCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGGCAGTCATCCCATTGTCCATGCTC CCTTGCTTCCCAGTAACCGCCTTTGAAGCGATATGTCCCGTCTTCGCCATCCTTCTGGAA CCATCTCGGCTTCCAGCCATTGTCTTGAAGCTTACTCGACATTCTTTGTCGTCGTTCCAA CCTCAGCTTCTCCGCGTTTGCCTTCTCATATTCACCGTTCTCTAGATGCCGCTGGTCTGG CCTTAGCCGTGAATCAGTAGGAGGGAGTTTGTCCTGAAGATCAGGAGACAGTTCGTTCAA TGTGATAGCGAACGACGATAGATTGTATCGCGTTGGATTAGGAGAAGGTTTGTTCTTTTC CCACAGAAGTACGGCACCTTTCAATTGATCAACGCTCTTGACC



consensusID : consensus_5084#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence
                              [TTTTTTTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACCAAATGATGCTCGATCTGTGCAATCGAATGTGCTGGCCTCACAATCCCAACCATGGCATCCCACAGGCCAACCGCAACCAACACAGCAAGCAGCAACATTCATTCACGCAATCAATTGTTCCAGGCAACATGCAGCTCATATCACACCAGCCCGGTAACCCAACGCCCATCCACATGCATATCTCACCACATGATAGCATGGCAAGCTCCTCTCATNNGTCTCATTCCTTCCTCCATTATTCATTTGCATNGCCATTTGCCATTGCATGTCCCTTGGTTTTCCTCATGGCAGGGACACACACACCCTTGCAACAGTTGCTTTCCAGCAGTTCCCACANCGTGCAAACTTGCGNGTTNGGTCTAAACTGCCTACTAAACAAGCAAGTGCAAACCCTGAGGCCATNNCATCCATGTCTTCCTGAAACACCTCACTCAAATATATGTCTAAAGGCCNAGTCATNCACATGGTNCCAATGCCTCCCCTTGCTTTCCCAGGTANCCGCCATTTGGNAGACGATNTGGTCCCGAGATCTNCGNCCAACTCATTCGTGGACAANCACTCCTTGGGTTTCACGCATGGTTTGAAAGCGTTAATTCNAAAATACATGGCGAAGTCCC]

[-] EMBL BI807259             [TTTTTTTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACCAAATGATGCTCGATCTGTGCAATCGAATGTGCTGGCCTCACAATCCCAACCATGGCATCCCACAGGCCAACCGCAACCAACACAGCAAGCAGCAACATTCATTCACGCAATCAATTGTTCCAGGCAACATGCAGCTCATATCACACCAGCCCGGTAACCCAACGCCCATCCACATGCATATCTCACCACATGATAGCATGGCAAGCTCCTCTCATNNGTCTCATTCCTTCCTCCATTATTCATTTGCATNGCCATTTGCCATTGCATGTCCCTTGGTTTTCCTCATGGCAGGGACACACACACCCTTGCAACAGTTGCTTTCCAGCAGTTCCCACANCGTGCAAACTTGCGNGTTNGGTCTAAACTGCCTACTAAACAAGCAAGTGCAAACCCTGAGGCCATNNCATCCATGTCTTCCTGAAACACCTCACTCAAATATATGTCTAAAGGCCNAGTCATNCACATGGTNCCAATGCCTCCCCTTGCTTTCCCAGGTANCCGCCATTTGGNAGACGATNTGGTCCCGAGATCTNCGNCCAACTCATTCGTGGACAANCACTCCTTGGGTTTCACGCATGGTTTGAAAGCGTTAATTCNAAAATACATGGCGAAGTCCC]


>consensus_5084#1 TTTTTTTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTA CCCCTTTTTCCTTTTCTACCAAATGATGCTCGATCTGTGCAATCGAATGTGCTGGCCTCA CAATCCCAACCATGGCATCCCACAGGCCAACCGCAACCAACACAGCAAGCAGCAACATTC ATTCACGCAATCAATTGTTCCAGGCAACATGCAGCTCATATCACACCAGCCCGGTAACCC AACGCCCATCCACATGCATATCTCACCACATGATAGCATGGCAAGCTCCTCTCATNNGTC TCATTCCTTCCTCCATTATTCATTTGCATNGCCATTTGCCATTGCATGTCCCTTGGTTTT CCTCATGGCAGGGACACACACACCCTTGCAACAGTTGCTTTCCAGCAGTTCCCACANCGT GCAAACTTGCGNGTTNGGTCTAAACTGCCTACTAAACAAGCAAGTGCAAACCCTGAGGCC ATNNCATCCATGTCTTCCTGAAACACCTCACTCAAATATATGTCTAAAGGCCNAGTCATN CACATGGTNCCAATGCCTCCCCTTGCTTTCCCAGGTANCCGCCATTTGGNAGACGATNTG GTCCCGAGATCTNCGNCCAACTCATTCGTGGACAANCACTCCTTGGGTTTCACGCATGGT TTGAAAGCGTTAATTCNAAAATACATGGCGAAGTCCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5084#0      CAGTCCAAAAGATCTGAATATGGTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCT 60
consensus_5084#1      -----------------TTTTTTTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCT 43
                                        * *  *************************************

consensus_5084#0      TTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTAC-AAATGATGCTCGATCTGTGCAAT 119
consensus_5084#1      TTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACCAAATGATGCTCGATCTGTGCAAT 103
                      ************************************ ***********************

consensus_5084#0      CGACATGTGCTGGCCTCACAATCCCAAC-ATGG-ATCCAAGGCAACGAACAAAAGAAGAG 177
consensus_5084#1      CGA-ATGTGCTGGCCTCACAATCCCAACCATGGCATCCCACAGGCCAACCGCAACCAACA 162
                      *** ************************ **** **** *     * * *  **  *   

consensus_5084#0      CAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAACGCC 237
consensus_5084#1      CAGCA--AGCAGCAACATTCATTCACGCAATCAATTGTT-----CCAGGCAAC--ATGCA 213
                      ** **  *  *  ** * *  **** * *** *  *  *     ** ** ***  * ** 

consensus_5084#0      ATCCATG-CATATCTACCACTGAAGATGGCAATGCTCTCTATTGTCTATTCCTTCCTCAT 296
consensus_5084#1      GCTCATATCACACCAGCCCGGTAACCCAACGCCCATCCACAT-GCATATCTCACCACATG 272
                         ***  ** * *  **    **     *     **   ** *  ***  *  *     

consensus_5084#0      ATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATG 356
consensus_5084#1      ATAGCATGGCAAGCTCCTCTCATNNGTCTCATTCCTTCCTCCATTATTCATTTGCATNGC 332
                      ** **** ***      *  ***   * ** **  ***       *   *  ****    

consensus_5084#0      CTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGA 416
consensus_5084#1      CAT-----TTGCCATTGCATGTCCCTTGGTTTTCCTCATGGCAGGGACACACACACCCTT 387
                      * *     ** * * ** *  *    * * * *  *  *   *    **     ***   

consensus_5084#0      GCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGGCAGTCATCCCATTGTCCAT 476
consensus_5084#1      GCAACAGTTGC-TTTCCAGCAGTTCCCACANCGTGCAAACTTGCGNGTT---NGGTCTAA 443
                      ***    *    * **    *  ****  *   **  **        *      *** * 

consensus_5084#0      GCTCCCTTGCTTCCCAGTAACCGCCTTTGAAGCGATATGTCCCGTCTTCGCCATCCTTCT 536
consensus_5084#1      ACTGCCTA----CTAAACAAGCAAGTGCAAACCCTGAGGCCATNNCATCCATGTCTTCCT 499
                       ** ***     *  *  ** *   *   ** *   * * *    * **    ** * **

consensus_5084#0      GGAACCATCTCGGCTTCCAGCCATTGTCTTGAAGCTTACTCGACATTCTTTGTCGTCGTT 596
consensus_5084#1      GAAAC-ACCTCA--CTCAAATATATGTCTAAAGGCCNAGTCA-------TNCACATGGTN 549
                      * *** * ***    ** *     *****  * **  * **        *   * * ** 

consensus_5084#0      CCAACCTCAGCTTCTCCGCGTTTGCCTTCTCATATTCACCGTTCTCTAGATGCCGCTGGT 656
consensus_5084#1      CCAAT----GCCTCCCCTTGCTTTCC--CAGGTANCCGCCATTTGGNAGACGATNTGGTC 603
                      ****     ** ** **  * ** **  *   **  * ** **    *** *     *  

consensus_5084#0      CTGGCCTTAGCCGTGAA-TCAGTAGGAGGGAGTTTGTCCTGAAGATCAGGAGACAGTTCG 715
consensus_5084#1      CCGAGATCTNCGNCCAACTCATTCGTGGACAANCACTCCTTGGGTTTCACGCATGGTTTG 663
                      * *   *   *    ** *** * *  *  *     ****   * *      *  *** *

consensus_5084#0      TTCAATGTGATAGCGAACGACGATAGATTGTATCGCGTTGGATTAGGAGAAGGTTTGTTC 775
consensus_5084#1      ---AAAGCGTTAATT--CNAAAATACATGGCGAAGTCCC--------------------- 697
                         ** * * **     * *  *** ** *    *                         

consensus_5084#0      TTTTCCCACAGAAGTACGGCACCTTTCAATTGATCAACGCTCTTGACC 823
consensus_5084#1      ------------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)