These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 823 fasta sequence [CAGTCCAAAAGATCTGAATATGGTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACAAATGATGCTCGATCTGTGCAATCGACATGTGCTGGCCTCACAATCCCAACATGGATCCAAGGCAACGAACAAAAGAAGAGCAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAACGCCATCCATGCATATCTACCACTGAAGATGGCAATGCTCTCTATTGTCTATTCCTTCCTCATATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATGCTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGAGCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGGCAGTCATCCCATTGTCCATGCTCCCTTGCTTCCCAGTAACCGCCTTTGAAGCGATATGTCCCGTCTTCGCCATCCTTCTGGAACCATCTCGGCTTCCAGCCATTGTCTTGAAGCTTACTCGACATTCTTTGTCGTCGTTCCAACCTCAGCTTCTCCGCGTTTGCCTTCTCATATTCACCGTTCTCTAGATGCCGCTGGTCTGGCCTTAGCCGTGAATCAGTAGGAGGGAGTTTGTCCTGAAGATCAGGAGACAGTTCGTTCAATGTGATAGCGAACGACGATAGATTGTATCGCGTTGGATTAGGAGAAGGTTTGTTCTTTTCCCACAGAAGTACGGCACCTTTCAATTGATCAACGCTCTTGACC] [+] EMBL CB628484 [CAGTCCAAAAGATCTGAATATGGTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACAAATGATGCTCGATCTGTGCAATCGACATGTGCTGGCCTCACAATCCCAACATGGATCCAAGGCAACGAACAAAAGAAGAGCAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAACGCCATCCATGCATATCTACCACTGAAGATGGCAATGCTCTCTATTGTCTATTCCTTCCTCATATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATGCTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGAGCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGGCAGTCATCCCATTGTCCATGCTCCCTTGCTTCCCAGTAACCGCCTTTGAAGCGATATGTCCCGTCTTCGCCATCCTTCTGGAACCATCTCGGCTTCCAGCCATTGTCTTGAAGCTTACTCGACATTCTTTGTCGTCGTTCCAACCTCAGCTTCTCCGCGTTTGCCTTCTCATATTCACCGTTCTCTAGATGCCGCTGGTCTGGCCTTAGCCGTGAATCAGTAGGAGGGAGTTTGTCCTGAAGATCAGGAGACAGTTCGTTCAATGTGATAGCGAACGACGATAGATTGTATCGCGTTGGATTAGGAGAAGGTTTGTTCTTTTCCCACAGAAGTACGGCACCTTTCAATTGATCAACGCTCTTGACC] [+] EMBL CA756588 [ CATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACAAATGATGCTCGATCTGTGCAATCGACATGTGCTGGCCTCACAATCCCAACATGGATCCAAGGCAACGAACAAAAGAAGAGCAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAAAGCCATCCATGCATATCTACCACTGAAGATGGCAATGCTCTATATTGTCTATTCCTTCCTCATATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATGCTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGAGCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGG ] consensusID : consensus_5084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [TTTTTTTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACCAAATGATGCTCGATCTGTGCAATCGAATGTGCTGGCCTCACAATCCCAACCATGGCATCCCACAGGCCAACCGCAACCAACACAGCAAGCAGCAACATTCATTCACGCAATCAATTGTTCCAGGCAACATGCAGCTCATATCACACCAGCCCGGTAACCCAACGCCCATCCACATGCATATCTCACCACATGATAGCATGGCAAGCTCCTCTCATNNGTCTCATTCCTTCCTCCATTATTCATTTGCATNGCCATTTGCCATTGCATGTCCCTTGGTTTTCCTCATGGCAGGGACACACACACCCTTGCAACAGTTGCTTTCCAGCAGTTCCCACANCGTGCAAACTTGCGNGTTNGGTCTAAACTGCCTACTAAACAAGCAAGTGCAAACCCTGAGGCCATNNCATCCATGTCTTCCTGAAACACCTCACTCAAATATATGTCTAAAGGCCNAGTCATNCACATGGTNCCAATGCCTCCCCTTGCTTTCCCAGGTANCCGCCATTTGGNAGACGATNTGGTCCCGAGATCTNCGNCCAACTCATTCGTGGACAANCACTCCTTGGGTTTCACGCATGGTTTGAAAGCGTTAATTCNAAAATACATGGCGAAGTCCC] [-] EMBL BI807259 [TTTTTTTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCTTTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACCAAATGATGCTCGATCTGTGCAATCGAATGTGCTGGCCTCACAATCCCAACCATGGCATCCCACAGGCCAACCGCAACCAACACAGCAAGCAGCAACATTCATTCACGCAATCAATTGTTCCAGGCAACATGCAGCTCATATCACACCAGCCCGGTAACCCAACGCCCATCCACATGCATATCTCACCACATGATAGCATGGCAAGCTCCTCTCATNNGTCTCATTCCTTCCTCCATTATTCATTTGCATNGCCATTTGCCATTGCATGTCCCTTGGTTTTCCTCATGGCAGGGACACACACACCCTTGCAACAGTTGCTTTCCAGCAGTTCCCACANCGTGCAAACTTGCGNGTTNGGTCTAAACTGCCTACTAAACAAGCAAGTGCAAACCCTGAGGCCATNNCATCCATGTCTTCCTGAAACACCTCACTCAAATATATGTCTAAAGGCCNAGTCATNCACATGGTNCCAATGCCTCCCCTTGCTTTCCCAGGTANCCGCCATTTGGNAGACGATNTGGTCCCGAGATCTNCGNCCAACTCATTCGTGGACAANCACTCCTTGGGTTTCACGCATGGTTTGAAAGCGTTAATTCNAAAATACATGGCGAAGTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5084#0 CAGTCCAAAAGATCTGAATATGGTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCT 60 consensus_5084#1 -----------------TTTTTTTTTTCTAATAATGCAGCGTCACATTCCATGGTGATCT 43 * * ************************************* consensus_5084#0 TTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTAC-AAATGATGCTCGATCTGTGCAAT 119 consensus_5084#1 TTTTTCATCTAAATTTACCCCTTTTTCCTTTTCTACCAAATGATGCTCGATCTGTGCAAT 103 ************************************ *********************** consensus_5084#0 CGACATGTGCTGGCCTCACAATCCCAAC-ATGG-ATCCAAGGCAACGAACAAAAGAAGAG 177 consensus_5084#1 CGA-ATGTGCTGGCCTCACAATCCCAACCATGGCATCCCACAGGCCAACCGCAACCAACA 162 *** ************************ **** **** * * * * ** * consensus_5084#0 CAACATTATTACGAATAATTGTTCAGGAAATGAGCTAATAACAGCCCGGTAACCAACGCC 237 consensus_5084#1 CAGCA--AGCAGCAACATTCATTCACGCAATCAATTGTT-----CCAGGCAAC--ATGCA 213 ** ** * * ** * * **** * *** * * * ** ** *** * ** consensus_5084#0 ATCCATG-CATATCTACCACTGAAGATGGCAATGCTCTCTATTGTCTATTCCTTCCTCAT 296 consensus_5084#1 GCTCATATCACACCAGCCCGGTAACCCAACGCCCATCCACAT-GCATATCTCACCACATG 272 *** ** * * ** ** * ** ** * *** * * consensus_5084#0 ATTGCATTGCATTGCATTTGCATTGCTGTCCTTGTTTCTATGCAGAAAAACCTGCAAATG 356 consensus_5084#1 ATAGCATGGCAAGCTCCTCTCATNNGTCTCATTCCTTCCTCCATTATTCATTTGCATNGC 332 ** **** *** * *** * ** ** *** * * **** consensus_5084#0 CTTCAGAGTTCCAACTGAACTTGGAGTTGGTCTAATGCTACTAAAAGCAACTGAACCTGA 416 consensus_5084#1 CAT-----TTGCCATTGCATGTCCCTTGGTTTTCCTCATGGCAGGGACACACACACCCTT 387 * * ** * * ** * * * * * * * * * ** *** consensus_5084#0 GCATTCATCATGTCTCTGAAAACTCCCCAAATATGTCAAGGCAGTCATCCCATTGTCCAT 476 consensus_5084#1 GCAACAGTTGC-TTTCCAGCAGTTCCCACANCGTGCAAACTTGCGNGTT---NGGTCTAA 443 *** * * ** * **** * ** ** * *** * consensus_5084#0 GCTCCCTTGCTTCCCAGTAACCGCCTTTGAAGCGATATGTCCCGTCTTCGCCATCCTTCT 536 consensus_5084#1 ACTGCCTA----CTAAACAAGCAAGTGCAAACCCTGAGGCCATNNCATCCATGTCTTCCT 499 ** *** * * ** * * ** * * * * * ** ** * ** consensus_5084#0 GGAACCATCTCGGCTTCCAGCCATTGTCTTGAAGCTTACTCGACATTCTTTGTCGTCGTT 596 consensus_5084#1 GAAAC-ACCTCA--CTCAAATATATGTCTAAAGGCCNAGTCA-------TNCACATGGTN 549 * *** * *** ** * ***** * ** * ** * * * ** consensus_5084#0 CCAACCTCAGCTTCTCCGCGTTTGCCTTCTCATATTCACCGTTCTCTAGATGCCGCTGGT 656 consensus_5084#1 CCAAT----GCCTCCCCTTGCTTTCC--CAGGTANCCGCCATTTGGNAGACGATNTGGTC 603 **** ** ** ** * ** ** * ** * ** ** *** * * consensus_5084#0 CTGGCCTTAGCCGTGAA-TCAGTAGGAGGGAGTTTGTCCTGAAGATCAGGAGACAGTTCG 715 consensus_5084#1 CCGAGATCTNCGNCCAACTCATTCGTGGACAANCACTCCTTGGGTTTCACGCATGGTTTG 663 * * * * ** *** * * * * **** * * * *** * consensus_5084#0 TTCAATGTGATAGCGAACGACGATAGATTGTATCGCGTTGGATTAGGAGAAGGTTTGTTC 775 consensus_5084#1 ---AAAGCGTTAATT--CNAAAATACATGGCGAAGTCCC--------------------- 697 ** * * ** * * *** ** * * consensus_5084#0 TTTTCCCACAGAAGTACGGCACCTTTCAATTGATCAACGCTCTTGACC 823 consensus_5084#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||