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Oryza sativa
cluster # 5086 cluster # 5086       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5086#0 length = 912 sequences # 1  
consensus_5086#1 length = 441 sequences # 1  
consensus_5086#2 length = 426 sequences # 1  

consensusID : consensus_5086#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 912
fasta sequence
                              [CGGTTGACGACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGACGCGAGTGGCGGCCGCCGCCGCCGGCGTGCTGCTGGTGGCGGCGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCGGCCTCAGCAGGTTGTCTCGGCGGAGGGGCAAGGACGGCGGCGGCCTCGGCCGGCTGTCTCGGCGACGCCGGGAAGGTCGGCGGCAGGAGACGGCGGTGGTCGGCACCGGCGCTGG]

[+] EMBL AK108702             [CGGTTGACGACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGACGCGAGTGGCGGCCGCCGCCGCCGGCGTGCTGCTGGTGGCGGCGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCGGCCTCAGCAGGTTGTCTCGGCGGAGGGGCAAGGACGGCGGCGGCCTCGGCCGGCTGTCTCGGCGACGCCGGGAAGGTCGGCGGCAGGAGACGGCGGTGGTCGGCACCGGCGCTGG]


>consensus_5086#0 CGGTTGACGACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATG GCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCA CACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACAT TTCCACGATGACGACGACGACGCGAGTGGCGGCCGCCGCCGCCGGCGTGCTGCTGGTGGC GGCGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGT GACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGA GTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAA CCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGTG GCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAA GTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCG CGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTT CGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGC CGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCAT CAACGGCAAGTCCGGCGGCCTCAGCAGGTTGTCTCGGCGGAGGGGCAAGGACGGCGGCGG CCTCGGCCGGCTGTCTCGGCGACGCCGGGAAGGTCGGCGGCAGGAGACGGCGGTGGTCGG CACCGGCGCTGG



consensusID : consensus_5086#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence
                              [AGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCAAGGCCGCCGCCGACCCGCCCATGTTCACCGTCGAGGCCGGCAAGACGTACCGGCTCCGCGTCTGCAACGTCGGCATCAAGGCGTCGCTCAATTCCGCATCCAGGG]

[+] EMBL C72986               [AGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCAAGGCCGCCGCCGACCCGCCCATGTTCACCGTCGAGGCCGGCAAGACGTACCGGCTCCGCGTCTGCAACGTCGGCATCAAGGCGTCGCTCAATTCCGCATCCAGGG]


>consensus_5086#1 AGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGG GCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCC CGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCC TGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACT GGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCC GCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCAAGGCCGCCGCCGACCCGCCCATGT TCACCGTCGAGGCCGGCAAGACGTACCGGCTCCGCGTCTGCAACGTCGGCATCAAGGCGT CGCTCAATTCCGCATCCAGGG



consensusID : consensus_5086#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence
                              [GACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGT]

[+] EMBL AU172461             [GACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGT]


>consensus_5086#2 GACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGC CGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTAC ATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGA TGACGACGACGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGT GGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCA ACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACG TGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGA ACTCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5086#0      CGGTTGACGACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATG 60
consensus_5086#2      --------GACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATG 52
consensus_5086#1      --------AGCACCGCAAGAACTCGTGGCAGGACGGCCTCG--CCGGGACGCAGTGCCCC 50
                                *  * *  *    *         *  ** *   ********   * *   

consensus_5086#0      GCCGCCGCCGCCGCCGCCCCCGCCTACTAA-ACCACCCTACCCACCCCCTCCAAACTCCC 119
consensus_5086#2      GCCGCCGCCGCCGCCGCCCCCGCCTACTAA-ACCACCCTACCCACCCCCTCCAAACTCCC 111
consensus_5086#1      ATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTC 110
                        ***  * * * **  *  * * *** *    ** ** *   ***   **   *    *

consensus_5086#0      ACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGC----CTAGCGAT 175
consensus_5086#2      ACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGC----CTAGCGAT 167
consensus_5086#1      TTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTC 170
                          * * *      *   *   *** * * *   *     *  * **      ****  

consensus_5086#0      CACATTTCCACGATGACGACGACGACGCGAGTGGCGGCCGCCGCCGCCGGCGTGCTGCTG 235
consensus_5086#2      CACATTTCCACGATGACGACGACG------------------------------------ 191
consensus_5086#1      GTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATG------ 224
                        **    *  * * *   **                                       

consensus_5086#0      GTGGCGGCGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGG 295
consensus_5086#2      ---------GCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGG 242
consensus_5086#1      ---------GTGCTCATCGGCGACTGGTACACCAAGGACC---ACGC---CGCCATGGCC 269
                               * ***   *****    *  *  * ******   ***    *  *  *   

consensus_5086#0      AAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAAC 355
consensus_5086#2      AAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAAC 302
consensus_5086#1      AAGATGCTCGACGCCGGCAAGAGCTTC--GGCCGC-CCGCACGGGGTGGTC---ATCAAC 323
                      *** **    *** *  ***** * **  ** *** *****   **** **   ******

consensus_5086#0      GGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTG 415
consensus_5086#2      GGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTG 362
consensus_5086#1      GGCAAGTCC---GGCAAGGCCGCCGCCGACCCGCCCATGTTCACCGTCGAGGCCGGCAAG 380
                      *** *** *   ***  *     *  *  * ** ***    ** * *** **    *  *

consensus_5086#0      TTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAAC 475
consensus_5086#2      TTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAAC 422
consensus_5086#1      ACGTACCGGCTCCGCGT-CTGCAACGTCGGCATCAAGGCGTCGCTCAATTCCGCATCCAG 439
                          *** ***   **  * **  *             **     **   *****   * 

consensus_5086#0      TCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACG 535
consensus_5086#2      TCGT-------------------------------------------------------- 426
consensus_5086#1      GG---------------------------------------------------------- 441
                                                                                  

consensus_5086#0      TACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATG 595
consensus_5086#2      ------------------------------------------------------------
consensus_5086#1      ------------------------------------------------------------
                                                                                  

consensus_5086#0      CACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTC 655
consensus_5086#2      ------------------------------------------------------------
consensus_5086#1      ------------------------------------------------------------
                                                                                  

consensus_5086#0      CCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGAC 715
consensus_5086#2      ------------------------------------------------------------
consensus_5086#1      ------------------------------------------------------------
                                                                                  

consensus_5086#0      CACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTG 775
consensus_5086#2      ------------------------------------------------------------
consensus_5086#1      ------------------------------------------------------------
                                                                                  

consensus_5086#0      GTCATCAACGGCAAGTCCGGCGGCCTCAGCAGGTTGTCTCGGCGGAGGGGCAAGGACGGC 835
consensus_5086#2      ------------------------------------------------------------
consensus_5086#1      ------------------------------------------------------------
                                                                                  

consensus_5086#0      GGCGGCCTCGGCCGGCTGTCTCGGCGACGCCGGGAAGGTCGGCGGCAGGAGACGGCGGTG 895
consensus_5086#2      ------------------------------------------------------------
consensus_5086#1      ------------------------------------------------------------
                                                                                  

consensus_5086#0      GTCGGCACCGGCGCTGG 912
consensus_5086#2      -----------------
consensus_5086#1      -----------------
                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)