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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 912 fasta sequence
[CGGTTGACGACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGACGCGAGTGGCGGCCGCCGCCGCCGGCGTGCTGCTGGTGGCGGCGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCGGCCTCAGCAGGTTGTCTCGGCGGAGGGGCAAGGACGGCGGCGGCCTCGGCCGGCTGTCTCGGCGACGCCGGGAAGGTCGGCGGCAGGAGACGGCGGTGGTCGGCACCGGCGCTGG]
[+] EMBL AK108702 [CGGTTGACGACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGACGCGAGTGGCGGCCGCCGCCGCCGGCGTGCTGCTGGTGGCGGCGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCGGCCTCAGCAGGTTGTCTCGGCGGAGGGGCAAGGACGGCGGCGGCCTCGGCCGGCTGTCTCGGCGACGCCGGGAAGGTCGGCGGCAGGAGACGGCGGTGGTCGGCACCGGCGCTGG]
consensusID : consensus_5086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[AGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCAAGGCCGCCGCCGACCCGCCCATGTTCACCGTCGAGGCCGGCAAGACGTACCGGCTCCGCGTCTGCAACGTCGGCATCAAGGCGTCGCTCAATTCCGCATCCAGGG]
[+] EMBL C72986 [AGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCAAGGCCGCCGCCGACCCGCCCATGTTCACCGTCGAGGCCGGCAAGACGTACCGGCTCCGCGTCTGCAACGTCGGCATCAAGGCGTCGCTCAATTCCGCATCCAGGG]
consensusID : consensus_5086#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence
[GACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGT]
[+] EMBL AU172461 [GACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5086#0 CGGTTGACGACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATG 60
consensus_5086#2 --------GACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATG 52
consensus_5086#1 --------AGCACCGCAAGAACTCGTGGCAGGACGGCCTCG--CCGGGACGCAGTGCCCC 50
* * * * * * ** * ******** * *
consensus_5086#0 GCCGCCGCCGCCGCCGCCCCCGCCTACTAA-ACCACCCTACCCACCCCCTCCAAACTCCC 119
consensus_5086#2 GCCGCCGCCGCCGCCGCCCCCGCCTACTAA-ACCACCCTACCCACCCCCTCCAAACTCCC 111
consensus_5086#1 ATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTC 110
*** * * * ** * * * *** * ** ** * *** ** * *
consensus_5086#0 ACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGC----CTAGCGAT 175
consensus_5086#2 ACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGC----CTAGCGAT 167
consensus_5086#1 TTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTC 170
* * * * * *** * * * * * * ** ****
consensus_5086#0 CACATTTCCACGATGACGACGACGACGCGAGTGGCGGCCGCCGCCGCCGGCGTGCTGCTG 235
consensus_5086#2 CACATTTCCACGATGACGACGACG------------------------------------ 191
consensus_5086#1 GTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATG------ 224
** * * * * **
consensus_5086#0 GTGGCGGCGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGG 295
consensus_5086#2 ---------GCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGG 242
consensus_5086#1 ---------GTGCTCATCGGCGACTGGTACACCAAGGACC---ACGC---CGCCATGGCC 269
* *** ***** * * * ****** *** * * *
consensus_5086#0 AAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAAC 355
consensus_5086#2 AAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAAC 302
consensus_5086#1 AAGATGCTCGACGCCGGCAAGAGCTTC--GGCCGC-CCGCACGGGGTGGTC---ATCAAC 323
*** ** *** * ***** * ** ** *** ***** **** ** ******
consensus_5086#0 GGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTG 415
consensus_5086#2 GGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTG 362
consensus_5086#1 GGCAAGTCC---GGCAAGGCCGCCGCCGACCCGCCCATGTTCACCGTCGAGGCCGGCAAG 380
*** *** * *** * * * * ** *** ** * *** ** * *
consensus_5086#0 TTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAAC 475
consensus_5086#2 TTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAAC 422
consensus_5086#1 ACGTACCGGCTCCGCGT-CTGCAACGTCGGCATCAAGGCGTCGCTCAATTCCGCATCCAG 439
*** *** ** * ** * ** ** ***** *
consensus_5086#0 TCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACG 535
consensus_5086#2 TCGT-------------------------------------------------------- 426
consensus_5086#1 GG---------------------------------------------------------- 441
consensus_5086#0 TACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATG 595
consensus_5086#2 ------------------------------------------------------------
consensus_5086#1 ------------------------------------------------------------
consensus_5086#0 CACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTC 655
consensus_5086#2 ------------------------------------------------------------
consensus_5086#1 ------------------------------------------------------------
consensus_5086#0 CCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGAC 715
consensus_5086#2 ------------------------------------------------------------
consensus_5086#1 ------------------------------------------------------------
consensus_5086#0 CACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTG 775
consensus_5086#2 ------------------------------------------------------------
consensus_5086#1 ------------------------------------------------------------
consensus_5086#0 GTCATCAACGGCAAGTCCGGCGGCCTCAGCAGGTTGTCTCGGCGGAGGGGCAAGGACGGC 835
consensus_5086#2 ------------------------------------------------------------
consensus_5086#1 ------------------------------------------------------------
consensus_5086#0 GGCGGCCTCGGCCGGCTGTCTCGGCGACGCCGGGAAGGTCGGCGGCAGGAGACGGCGGTG 895
consensus_5086#2 ------------------------------------------------------------
consensus_5086#1 ------------------------------------------------------------
consensus_5086#0 GTCGGCACCGGCGCTGG 912
consensus_5086#2 -----------------
consensus_5086#1 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||