These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 912 fasta sequence [CGGTTGACGACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGACGCGAGTGGCGGCCGCCGCCGCCGGCGTGCTGCTGGTGGCGGCGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCGGCCTCAGCAGGTTGTCTCGGCGGAGGGGCAAGGACGGCGGCGGCCTCGGCCGGCTGTCTCGGCGACGCCGGGAAGGTCGGCGGCAGGAGACGGCGGTGGTCGGCACCGGCGCTGG] [+] EMBL AK108702 [CGGTTGACGACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGACGCGAGTGGCGGCCGCCGCCGCCGGCGTGCTGCTGGTGGCGGCGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCGGCCTCAGCAGGTTGTCTCGGCGGAGGGGCAAGGACGGCGGCGGCCTCGGCCGGCTGTCTCGGCGACGCCGGGAAGGTCGGCGGCAGGAGACGGCGGTGGTCGGCACCGGCGCTGG] consensusID : consensus_5086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [AGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCAAGGCCGCCGCCGACCCGCCCATGTTCACCGTCGAGGCCGGCAAGACGTACCGGCTCCGCGTCTGCAACGTCGGCATCAAGGCGTCGCTCAATTCCGCATCCAGGG] [+] EMBL C72986 [AGCACCGCAAGAACTCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGACCACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTGGTCATCAACGGCAAGTCCGGCAAGGCCGCCGCCGACCCGCCCATGTTCACCGTCGAGGCCGGCAAGACGTACCGGCTCCGCGTCTGCAACGTCGGCATCAAGGCGTCGCTCAATTCCGCATCCAGGG] consensusID : consensus_5086#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [GACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGT] [+] EMBL AU172461 [GACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATGGCCGCCGCCGCCGCCGCCCCCGCCTACTAAACCACCCTACCCACCCCCTCCAAACTCCCACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGCCTAGCGATCACATTTCCACGATGACGACGACGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGGAAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAACGGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTGTTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAACTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5086#0 CGGTTGACGACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATG 60 consensus_5086#2 --------GACCTCTCCGGTCTCCCCCCTCACCCCACCGCAACCCGGGACGTCTTCCATG 52 consensus_5086#1 --------AGCACCGCAAGAACTCGTGGCAGGACGGCCTCG--CCGGGACGCAGTGCCCC 50 * * * * * * ** * ******** * * consensus_5086#0 GCCGCCGCCGCCGCCGCCCCCGCCTACTAA-ACCACCCTACCCACCCCCTCCAAACTCCC 119 consensus_5086#2 GCCGCCGCCGCCGCCGCCCCCGCCTACTAA-ACCACCCTACCCACCCCCTCCAAACTCCC 111 consensus_5086#1 ATCGCGCCGGGCACCAACTACACGTACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTC 110 *** * * * ** * * * *** * ** ** * *** ** * * consensus_5086#0 ACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGC----CTAGCGAT 175 consensus_5086#2 ACACATTACATCCTTCAAAGAGAGCATCACACACACACACACACCAGC----CTAGCGAT 167 consensus_5086#1 TTCTACTTCCCGTCGCTGGGGATGCACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTC 170 * * * * * *** * * * * * * ** **** consensus_5086#0 CACATTTCCACGATGACGACGACGACGCGAGTGGCGGCCGCCGCCGCCGGCGTGCTGCTG 235 consensus_5086#2 CACATTTCCACGATGACGACGACG------------------------------------ 191 consensus_5086#1 GTCAGCCGCCTGCTCATCCCGGTCCCGTTCGACCCGCCGGCCGACGACCACATG------ 224 ** * * * * ** consensus_5086#0 GTGGCGGCGGCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGG 295 consensus_5086#2 ---------GCGCTGGCCGGCGTGGCGCGCGGCGAGGACCCGTACGTGTTCTTCGAGTGG 242 consensus_5086#1 ---------GTGCTCATCGGCGACTGGTACACCAAGGACC---ACGC---CGCCATGGCC 269 * *** ***** * * * ****** *** * * * consensus_5086#0 AAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAAC 355 consensus_5086#2 AAGGTGACGTACGGCACCAAGACCCTCCTGGACGCGCCGCAGAAGGTGATCCTGATCAAC 302 consensus_5086#1 AAGATGCTCGACGCCGGCAAGAGCTTC--GGCCGC-CCGCACGGGGTGGTC---ATCAAC 323 *** ** *** * ***** * ** ** *** ***** **** ** ****** consensus_5086#0 GGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTG 415 consensus_5086#2 GGCGAGTTCCCGGGCCCGCGGATCAACTGCTCGTCCAACAACAACATCGTGGTGAACGTG 362 consensus_5086#1 GGCAAGTCC---GGCAAGGCCGCCGCCGACCCGCCCATGTTCACCGTCGAGGCCGGCAAG 380 *** *** * *** * * * * ** *** ** * *** ** * * consensus_5086#0 TTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAAC 475 consensus_5086#2 TTCAACCAGCTGGACGAGCCGCTGCTCTTCACCTGGAACGGGATGCAGCACCGCAAGAAC 422 consensus_5086#1 ACGTACCGGCTCCGCGT-CTGCAACGTCGGCATCAAGGCGTCGCTCAATTCCGCATCCAG 439 *** *** ** * ** * ** ** ***** * consensus_5086#0 TCGTGGCAGGACGGCCTCGCCGGGACGCAGTGCCCCATCGCGCCGGGCACCAACTACACG 535 consensus_5086#2 TCGT-------------------------------------------------------- 426 consensus_5086#1 GG---------------------------------------------------------- 441 consensus_5086#0 TACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCGCTGGGGATG 595 consensus_5086#2 ------------------------------------------------------------ consensus_5086#1 ------------------------------------------------------------ consensus_5086#0 CACCGCGCCGCCGGCGGCTACGGCGGGATCAGCGTCGTCAGCCGCCTGCTCATCCCGGTC 655 consensus_5086#2 ------------------------------------------------------------ consensus_5086#1 ------------------------------------------------------------ consensus_5086#0 CCGTTCGACCCGCCGGCCGACGACCACATGGTGCTCATCGGCGACTGGTACACCAAGGAC 715 consensus_5086#2 ------------------------------------------------------------ consensus_5086#1 ------------------------------------------------------------ consensus_5086#0 CACGCCGCCATGGCCAAGATGCTCGACGCCGGCAAGAGCTTCGGCCGCCCGCACGGGGTG 775 consensus_5086#2 ------------------------------------------------------------ consensus_5086#1 ------------------------------------------------------------ consensus_5086#0 GTCATCAACGGCAAGTCCGGCGGCCTCAGCAGGTTGTCTCGGCGGAGGGGCAAGGACGGC 835 consensus_5086#2 ------------------------------------------------------------ consensus_5086#1 ------------------------------------------------------------ consensus_5086#0 GGCGGCCTCGGCCGGCTGTCTCGGCGACGCCGGGAAGGTCGGCGGCAGGAGACGGCGGTG 895 consensus_5086#2 ------------------------------------------------------------ consensus_5086#1 ------------------------------------------------------------ consensus_5086#0 GTCGGCACCGGCGCTGG 912 consensus_5086#2 ----------------- consensus_5086#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||