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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 861 fasta sequence
[TCTGTTGTCAAGTTCAGCAGATCACAGGCGAAACTAAATTCTGAAATTGTGAAGCACTTGGGTAGTATCCATGAATACTTGGAGATGATGATATCTGTTCATCATGCGTTTACTGATCGTTCTAATGCTTTACACCATGTGCAAAGTCTGTCAGCAGATCTATTTTTCTTGCACACCAGGGCAGAAAAACTTGAATCAGTATCATCTAGGAGTAGAAGTATAGACCAGGAGTGGACAAGGCACCAGAAATTAGGGGGATTGAAAGAAACAATAAGTGCAACAGAAGCAGCGAAAAGCCACGCACTTAAAGAATATGAAAATATTAAGGAGAACAATACGATTGAAATTAAAAGATTCGATGAGGATAGGTGTCGAGATTTTGTGCAGATGCTGAAGGGATTTATTGTAAATCAGGTTTCATATTCAGACCATTATGCTAATATGTGGGCAAAGGTAGCAGACGAAACTAAAGTGTACGCAAAAAGGAGCAACTGATGCGGCTTGTGTATAGTATAGTACTCCGTAGTAGCTAGTAGGATCTTGGTTTATTTTGAATTGCTGACTATAACACTTGATTCTCCCCAGTTTTGCCACCATGCGGTTCATTGTATTGCTACATTTGAGTTAGAGAGAGNTTANGCGAATGGGCTTCTCGGTGACAATTGACATGCACGGCATATTTTTTCCCTTANTTTTTTTTCCAAAAATNCATTTTCCCTCTTCTAGAAATCTCTTGNGCATTTTACGGTCCTACCTCGNGNAACTGATGTATCTGGTTTGAATTTTGNCATGGACGC-ATNCATGG-NTNTAC-ACAGGCACTTTTT-ACACGNTTNTGGCTGTCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA766900 [TCTGTTGTCAAGTTCAGCAGATCACAGGCGAAACTAAATTCTGAAATTGTGAAGCACTTGGGTAGTATCCATGAATACTTGGAGATGATGATATCTGTTCATCATGCGTTTACTGATCGTTCTAATGCTTTACACCATGTGCAAAGTCTGTCAGCAGATCTATTTTTCTTGCACACCAGGGCAGAAAAACTTGAATCAGTATCATCTAGGAGTAGAAGTATAGACCAGGAGTGGACAAGGCACCAGAAATTAGGGGGATTGAAAGAAACAATAAGTGCAACAGAAGCAGCGAAAAGCCACGCACTTAAAGAATATGAAAATATTAAGGAGAACAATACGATTGAAATTAAAAGATTCGATGAGGATAGGTGTCGAGATTTTGTGCAGATGCTGAAGGGATTTATTGTAAATCAGGTTTCATATTCAGACCATTATGCTAATATGTGGGCAAAGGTAGCAGACGAAACTAAAGTGTACGCAAAAAGGAGCAACTGATGCGGCTTGTGTATAGTATAGTACTCCGTAGTAGCTAGTAGGATCTTGGTTTATTTTGAATTGCTGACTATAACACTTGATTCTCCCCAGTTTTGCCACCATGCGGTTCATTGTATTGCTACATTTGAGTTAGAGAGAGNTTANGCGAATGGGCTTCTCGGTGACAATTGACATGCACGGCATATTTTTTCCCTTANTTTTTTTTCCAAAAATNCATTTTCCCTCTTCTAGAAATCTCTTGNGCATTTTACGGTCCTACCTCGNGNAACTGATGTATCTGGTTTGAATTTTGNCATGGACGC ATNCATGG NTNTAC ACAGGCACTTTTT ACACGNTTN ]
[-] EMBL CA760293 [ TGCACACCAGGGCAGAAAAACTTGAATCAGTATCATCTTGGAGTAGAAGTATAGACCAGGAGTGGACAAGGCACCAGAAATTAGGGGGATTGAAAGAAACAATAAGTGCAACAGAAGCAGCGAAAAGCCNCGCGCTTAAAGAATATGAAAATATTAAGGAGAACAATTCGATTGAAATTAAAAGATTCGATGAGGATAGGTGTCGAGATTTTGTGCAGATGCTGAAGGGATTTATTGTAAATCAGGTTTCATATTCAGACCATTATGCTAATATGTGGGCAAAGGTAGCAGACGAAACTAAAGTGTACGCAAAAAGGAGCAACTGATGCGGCTTGTGTATAGTATAGTACTCCGTAGTAGCTAGTAGGATCTTGGTTTATTTTGAATTGCTGACTATAACACTTGATTCTCCCCAGTTTTGCCCCCCTGCGGTTCATTGTATTGCTACATTTGAGTTAAAGAGAGTTTAGGCGAATGGGCTTCTCGGTGACAATTGACATGCCCGGCATATTTTTCCCCTTATTTTTTTTCCCAAAAATCCA TTTCCCTTTTCTAGAAATCTCTTGTGCATTTTACGGTCCTACCTCGTGAAACTGATGTATCTGGTTTGAATTTTGCCATGGACGCAATCCATGGTATATACAACAGGCACTTTTTCACACGTTTTTGGCTGTCAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_5095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[AGTTCAGCAGATCACAGGCGAAACTAAATTCTGAAATTGTGAAGCACTTGGGTAGTATCCATGAATACTTGGAGATGATGATATCTGTTCATCATGCGTTTACTGATCGTTCTAATGCTTTACACCATGTGCAAAGTCTGTCAGCAGATCTATTTTTCTTGCACACCAGGGCAGAAAAACTTGAATCAGTATCATCTTGGAGTAGAAGTATAGACCAGGAGTGGACAAGGCCCCAGAAATTAGGGGGATTGAAAGAACCAATAAGTGCAACAGAAGCAGCGAAAAGCCCCGCCCTTAAAGAATATGAAAATATTAAGGAGACCAATTCGATTGAAATTAAAAGATTCGATAAGGATAGGTGTCGAGATTTTGTGCAGATGCTGAAGGGATTTATTGTAAATCAGGTTTCATATTCAGACCATTATGCTAATATGTGGGCAAAGGTAGCAGACGAAACTAAAGTGTACGCAAAAAGGAGCAACTGATGCGGCTTGTGTATAGTATAGTACTCCGTAGTAGCTAGTAGGATCTTGGTTTATTTTGAATTGCTGACTATAACCCTTGATTCTCCCCAGTTTTGCCCCCATGCGGTTCATTGTATTGCTACATTTGAGTTAGAGAGAGTTTAGGCGAATGGGCTTTTCGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760292 [AGTTCAGCAGATCACAGGCGAAACTAAATTCTGAAATTGTGAAGCACTTGGGTAGTATCCATGAATACTTGGAGATGATGATATCTGTTCATCATGCGTTTACTGATCGTTCTAATGCTTTACACCATGTGCAAAGTCTGTCAGCAGATCTATTTTTCTTGCACACCAGGGCAGAAAAACTTGAATCAGTATCATCTTGGAGTAGAAGTATAGACCAGGAGTGGACAAGGCCCCAGAAATTAGGGGGATTGAAAGAACCAATAAGTGCAACAGAAGCAGCGAAAAGCCCCGCCCTTAAAGAATATGAAAATATTAAGGAGACCAATTCGATTGAAATTAAAAGATTCGATAAGGATAGGTGTCGAGATTTTGTGCAGATGCTGAAGGGATTTATTGTAAATCAGGTTTCATATTCAGACCATTATGCTAATATGTGGGCAAAGGTAGCAGACGAAACTAAAGTGTACGCAAAAAGGAGCAACTGATGCGGCTTGTGTATAGTATAGTACTCCGTAGTAGCTAGTAGGATCTTGGTTTATTTTGAATTGCTGACTATAACCCTTGATTCTCCCCAGTTTTGCCCCCATGCGGTTCATTGTATTGCTACATTTGAGTTAGAGAGAGTTTAGGCGAATGGGCTTTTCGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5095#0 TCTGTTGTCAAGTTCAGCAGATCACAGGCGAAACTAAATTCTGAAATTGTGAAGCACTTG 60
consensus_5095#1 ----------AGTTCAGCAGATCACAGGCGAAACTAAATTCTGAAATTGTGAAGCACTTG 50
**************************************************
consensus_5095#0 GGTAGTATCCATGAATACTTGGAGATGATGATATCTGTTCATCATGCGTTTACTGATCGT 120
consensus_5095#1 GGTAGTATCCATGAATACTTGGAGATGATGATATCTGTTCATCATGCGTTTACTGATCGT 110
************************************************************
consensus_5095#0 TCTAATGCTTTACACCATGTGCAAAGTCTGTCAGCAGATCTATTTTTCTTGCACACCAGG 180
consensus_5095#1 TCTAATGCTTTACACCATGTGCAAAGTCTGTCAGCAGATCTATTTTTCTTGCACACCAGG 170
************************************************************
consensus_5095#0 GCAGAAAAACTTGAATCAGTATCATCTAGGAGTAGAAGTATAGACCAGGAGTGGACAAGG 240
consensus_5095#1 GCAGAAAAACTTGAATCAGTATCATCTTGGAGTAGAAGTATAGACCAGGAGTGGACAAGG 230
*************************** ********************************
consensus_5095#0 CACCAGAAATTAGGGGGATTGAAAGAAACAATAAGTGCAACAGAAGCAGCGAAAAGCCAC 300
consensus_5095#1 CCCCAGAAATTAGGGGGATTGAAAGAACCAATAAGTGCAACAGAAGCAGCGAAAAGCCCC 290
* ************************* ****************************** *
consensus_5095#0 GCACTTAAAGAATATGAAAATATTAAGGAGAACAATACGATTGAAATTAAAAGATTCGAT 360
consensus_5095#1 GCCCTTAAAGAATATGAAAATATTAAGGAGACCAATTCGATTGAAATTAAAAGATTCGAT 350
** **************************** **** ***********************
consensus_5095#0 GAGGATAGGTGTCGAGATTTTGTGCAGATGCTGAAGGGATTTATTGTAAATCAGGTTTCA 420
consensus_5095#1 AAGGATAGGTGTCGAGATTTTGTGCAGATGCTGAAGGGATTTATTGTAAATCAGGTTTCA 410
***********************************************************
consensus_5095#0 TATTCAGACCATTATGCTAATATGTGGGCAAAGGTAGCAGACGAAACTAAAGTGTACGCA 480
consensus_5095#1 TATTCAGACCATTATGCTAATATGTGGGCAAAGGTAGCAGACGAAACTAAAGTGTACGCA 470
************************************************************
consensus_5095#0 AAAAGGAGCAACTGATGCGGCTTGTGTATAGTATAGTACTCCGTAGTAGCTAGTAGGATC 540
consensus_5095#1 AAAAGGAGCAACTGATGCGGCTTGTGTATAGTATAGTACTCCGTAGTAGCTAGTAGGATC 530
************************************************************
consensus_5095#0 TTGGTTTATTTTGAATTGCTGACTATAACACTTGATTCTCCCCAGTTTTGCCACCATGCG 600
consensus_5095#1 TTGGTTTATTTTGAATTGCTGACTATAACCCTTGATTCTCCCCAGTTTTGCCCCCATGCG 590
***************************** ********************** *******
consensus_5095#0 GTTCATTGTATTGCTACATTTGAGTTAGAGAGAGNTTANGCGAATGGGCTTCTCGGTGAC 660
consensus_5095#1 GTTCATTGTATTGCTACATTTGAGTTAGAGAGAGTTTAGGCGAATGGGCTTTTCGGTGCC 650
********************************** *** ************ ****** *
consensus_5095#0 AATTGACATGCACGGCATATTTTTTCCCTTANTTTTTTTTCCAAAAATNCATTTTCCCTC 720
consensus_5095#1 AAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 676
** * * * * *
consensus_5095#0 TTCTAGAAATCTCTTGNGCATTTTACGGTCCTACCTCGNGNAACTGATGTATCTGGTTTG 780
consensus_5095#1 ------------------------------------------------------------
consensus_5095#0 AATTTTGNCATGGACGCATNCATGGNTNTACACAGGCACTTTTTACACGNTTNTGGCTGT 840
consensus_5095#1 ------------------------------------------------------------
consensus_5095#0 CAAAAAAAAAAAAAAAAAAAA 861
consensus_5095#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||