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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_51#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[TGGAGATGATCCTCACGGATTGCCGATGATCCGGATTCCGAGCGGAGGTACCAAGACGAACGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCANGGTTAGGTATTATCTTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTGCTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAATCATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCACGCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCCGACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAATCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTCGTCTTCGTATCGACAAATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGAACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAATGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTACTTTTCAATTTCTTTTCACAAATATTCCACCTAATGCTAAAATTT]
[+] EMBL CA765270 [TGGAGATGATCCTCACGGATTGCCGATGATCCGGATTCCGAGCGGAGGTACCAAGACGAACGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCANGGTTAGGTATTATCTTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTGCTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAATCATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCACGCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCCGACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAATCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTCGTCTTCGTATCGACAAATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGAACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAATGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTACTTTTCAATTTCTTTTCACAAATATTCCACCTAATGCTAAAATTT]
consensusID : consensus_51#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[CGAGACAAGGGGGGGAGGTACCAAGACGAACGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCAGGTTAGGTATTATTTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTGCTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAATCATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCACGCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCCGACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAATCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTNGTCTTCGTATCGACAAATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGAACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAATGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTAA]
[-] EMBL CA761367 [CGAGACAAGGGGGGGAGGTACCAAGACGAACGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCAGGTTAGGTATTATTTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTGCTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAATCATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCACGCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCCGACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAATCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTNGTCTTCGTATCGACAAATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGAACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAATGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_51#0 TGGAGATGATCCTCACGGATTGCCGATGATCCGGATTCCGAGCGGAGGTACCAAGACGAA 60
consensus_51#1 ------------------------------CGAGACAAGGGGGGGAGGTACCAAGACGAA 30
* ** * * *****************
consensus_51#0 CGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCANGGTTAGG 120
consensus_51#1 CGGAAATCCATCGAAGTTTTAATCTCCCACGAGACAACATCCAGATATATCAGG-TTAGG 89
**************************************************** * *****
consensus_51#0 TATTATCTTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTG 180
consensus_51#1 TATTAT-TTCTTATCAATCCAAATGGATTTCTCATCTCACGCAATTTGGATCTAAGATTG 148
****** *****************************************************
consensus_51#0 CTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAAT 240
consensus_51#1 CTAGGGCTTAGATTCACTAACCTAATCCTATAAATTTCCTTGCACATCGGTCTCCACAAT 208
************************************************************
consensus_51#0 CATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCAC 300
consensus_51#1 CATCTGCCATCGCATCTAGAGTCCACATAGCAATCCTCCATCCTTGCATTTGCTAGCCAC 268
************************************************************
consensus_51#0 GCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCC 360
consensus_51#1 GCAAGACTCAGGGACATCTTCTCCCTTTATCAGACTGCAACCCGGACATCTTACACAGCC 328
************************************************************
consensus_51#0 GACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAA 420
consensus_51#1 GACTCTTTCTGATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCATCGGAA 388
************************************************************
consensus_51#0 TCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTCGTCTTCGTATCGACAA 480
consensus_51#1 TCTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCCGTNGTCTTCGTATCGACAA 448
******************************************* ****************
consensus_51#0 ATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGA 540
consensus_51#1 ATTCGATATCCTGAGCAACTCGCCAATGAACCTATTCTAGATCTGGGAGACAGTATGTGA 508
************************************************************
consensus_51#0 ACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAA 600
consensus_51#1 ACAACAGGTGACCAATGACTGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAAA 568
************************************************************
consensus_51#0 TGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTACTTTTCAATTTCTTTTCACA 660
consensus_51#1 TGAGAACCTGGGAGAAAGAGTATGACCCATTCCATGGCTAA------------------- 609
****************************************
consensus_51#0 AATATTCCACCTAATGCTAAAATTT 685
consensus_51#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||