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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5109 cluster # 5109       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5109#0 length = 1092 sequences # 3  

consensusID : consensus_5109#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1092
fasta sequence
                              [CTAATTACACGATCCATCCATTTGCATCATCGTCGTCGTCTTCTTCGATCGATCGGCTGATCCAGTAATTCCTCGATCGGTGGACGTACGCCACGCTACTATCATCATATCAATCCCCGATCGACAGGTTAACATCGATCGATCATCCAAGCCAGCCATCGATCCATCAGAATAAGCAGCTAGCTTGGAGACCGATCGATCGATCGATCATATGTCGATTCGATTCGATCCGATGGAGAGCAGAAGCAGCAGCAGCAGCAGAAGCGTGGTGATGATGTGCTGCGTGCTGATGTTGATGATTGC-GGCGGCGGCGCATGCGGGCGAGCAGGAGGCGGAGGAGTGCGCTAGCCCGATGAGCATCGAGGAGGCGTGCCGGGGGGCATCGGAGACGCACCACGCGGTGGCCTACGACCACTGCG-TGGCGTCGCTGACGGCGGACCCGCGCAGCAGCAGCAGCGAGGCCCGCAGCCTGCACGGGCTCGCCATGCTCGCCACCCGTATGGCCATCGACCACGCCACCAGCACCGTCTGCAAGATGGACGACCTCGCGGAGCTGGAGCCCGAGGATTCTTCGTCGCCGTCGGACGCGCGCGCACGGTTCGAGCACTGCCTTGAGCAGTACGGCGGCGCCGCCGACCTCCTCCGCGACGCCCTGGACAACCTCAAGGTCCGCATCTACGGGACGGCCATGGAGCAGCTGTCCGCCGCGCTGGGCGCCGCCGAGAGCTGCGAGGACGCGTGGAAGGGCGACGAGGGCAACATCCCCATCGCCGCCCACGACAGGGAGTACGGCAGGATGGCCCACATCGCCATCGGCTTCACCCACGCCGCCGCCTAATCTTCCTCAATTTCTTCCTTACTTCCATCTATCGCCTGCCTGCCTCTGCCTAATTTTATTTCTACTACTCCTTATTAATTTGCATTCTCATCGATCGATCATCCGCTGGAATTTCTTCTTCTTTTACTTAAATTATTATTATTATTATTATTAATTGCTGATTGAATTGAATATGTACTGTAGGATTTAATTGTTCATCAGATGAAAGACGAATGAATAATAACACGATTAATTTACTGTGTAAAAAAAAAAAA]

[+] EMBL AK069788             [CTAATTACACGATCCATCCATTTGCATCATCGTCGTCGTCTTCTTCGATCGATCGGCTGATCCAGTAATTCCTCGATCGGTGGACGTACGCCACGCTACTATCATCATATCAATCCCCGATCGACAGGTTAACATCGATCGATCATCCAAGCCAGCCATCGATCCATCAGAATAAGCAGCTAGCTTGGAGACCGATCGATCGATCGATCATATGTCGATTCGATTCGATCCGATGGAGAGCAGAAGCAGCAGCAGCAGCAGAAGCGTGGTGATGATGTGCTGCGTGCTGATGTTGATGATTGC GGCGGCGGCGCATGCGGGCGAGCAGGAGGCGGAGGAGTGCGCTAGCCCGATGAGCATCGAGGAGGCGTGCCGGGGGGCATCGGAGACGCACCACGCGGTGGCCTACGACCACTGCG TGGCGTCGCTGACGGCGGACCCGCGCAGCAGCAGCAGCGAGGCCCGCAGCCTGCACGGGCTCGCCATGCTCGCCACCCGTATGGCCATCGACCACGCCACCAGCACCGTCTGCAAGATGGACGACCTCGCGGAGCTGGAGCCCGAGGATTCTTCGTCGCCGTCGGACGCGCGCGCACGGTTCGAGCACTGCCTTGAGCAGTACGGCGGCGCCGCCGACCTCCTCCGCGACGCCCTGGACAACCTCAAGGTCCGCATCTACGGGACGGCCATGGAGCAGCTGTCCGCCGCGCTGGGCGCCGCCGAGAGCTGCGAGGACGCGTGGAAGGGCGACGAGGGCAACATCCCCATCGCCGCCCACGACAGGGAGTACGGCAGGATGGCCCACATCGCCATCGGCTTCACCCACGCCGCCGCCTAATCTTCCTCAATTTCTTCCTTACTTCCATCTATCGCCTGCCTGCCTCTGCCTAATTTTATTTCTACTACTCCTTATTAATTTGCATTCTCATCGATCGATCATCCGCTGGAATTTCTTCTTCTTTTACTTAAATTATTATTATTATTATTATTAATTGCTGATTGAATTGAATATGTACTGTAGGATTTAATTGTTCATCAGATGAAAGACGAATGAATAATAACACGATTAA                      ]
[+] EMBL C72089               [                           CATCGTCGTCGTCTTCTTCGATCGATCGGCTGATCCAGTAATTCCTCGATCGGTGGACGTACGCCACGCTACTATCATCATATCAATCCCCGATCGACAGGTTAACATCGATCGATCATCCAAGNCAGCCATCGATCCATCAGAATAAGCAGCTAGCTTGGAGACCGATCGATCGATCGATCATATGTCGATTCGATTCGNTCCGATGGAGAGCAGAAGCAGCAGCAGCAGCAGAAGCGTGGTGATGATGTGCTGCGTGCTGATGTTGATGATTGCGGGCGGCGGCGCATGCGGGCGAGCAGGAGGCGGAGGAGTGCGCTAGCCCGATGAGCATCGAGGAGGCGTGCCGGGGGGCATCGGAGACGCANCACGCGGTGGCCTACGACCACTNCGTTGGCGTCGCTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU172548             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGCCCTGGACAACCTCAAGGTCCGCATCTACGGGACGGCCATGGAGCAGCTGTCCGCCGCGCTGGGCGCCGCCGAGAGCTGCGAGGACGCGTGGAAGGGCGACGAGGGCAACATCCCCATCGCCGCCCACGACAGGGAGTACGGCAGGATGGCCCACATCGCCATCGGCTTCACCCACGCCGCCGCCTAATCTTCCTCCATTTCTTCCTTACTTCCATCTATCGCCTGCCTGCCTCTGCCTAATTTTATTTCTACTACTCCTTATTAATTTGCATTCTCATCGATCGATCATCCGCTGGAATTTCTTCTTCTTTTACTTAAATTATTATTATTATTATTATTAATTGCTGATTGAATTGAATATGTACTGTAGGATTTAATTGTTCATCAGATGAAAGACGAATGAATAATAACACGATTAATTTACTGTGTAAAAAAAAAAAA]


>consensus_5109#0 CTAATTACACGATCCATCCATTTGCATCATCGTCGTCGTCTTCTTCGATCGATCGGCTGA TCCAGTAATTCCTCGATCGGTGGACGTACGCCACGCTACTATCATCATATCAATCCCCGA TCGACAGGTTAACATCGATCGATCATCCAAGCCAGCCATCGATCCATCAGAATAAGCAGC TAGCTTGGAGACCGATCGATCGATCGATCATATGTCGATTCGATTCGATCCGATGGAGAG CAGAAGCAGCAGCAGCAGCAGAAGCGTGGTGATGATGTGCTGCGTGCTGATGTTGATGAT TGCGGCGGCGGCGCATGCGGGCGAGCAGGAGGCGGAGGAGTGCGCTAGCCCGATGAGCAT CGAGGAGGCGTGCCGGGGGGCATCGGAGACGCACCACGCGGTGGCCTACGACCACTGCGT GGCGTCGCTGACGGCGGACCCGCGCAGCAGCAGCAGCGAGGCCCGCAGCCTGCACGGGCT CGCCATGCTCGCCACCCGTATGGCCATCGACCACGCCACCAGCACCGTCTGCAAGATGGA CGACCTCGCGGAGCTGGAGCCCGAGGATTCTTCGTCGCCGTCGGACGCGCGCGCACGGTT CGAGCACTGCCTTGAGCAGTACGGCGGCGCCGCCGACCTCCTCCGCGACGCCCTGGACAA CCTCAAGGTCCGCATCTACGGGACGGCCATGGAGCAGCTGTCCGCCGCGCTGGGCGCCGC CGAGAGCTGCGAGGACGCGTGGAAGGGCGACGAGGGCAACATCCCCATCGCCGCCCACGA CAGGGAGTACGGCAGGATGGCCCACATCGCCATCGGCTTCACCCACGCCGCCGCCTAATC TTCCTCAATTTCTTCCTTACTTCCATCTATCGCCTGCCTGCCTCTGCCTAATTTTATTTC TACTACTCCTTATTAATTTGCATTCTCATCGATCGATCATCCGCTGGAATTTCTTCTTCT TTTACTTAAATTATTATTATTATTATTATTAATTGCTGATTGAATTGAATATGTACTGTA GGATTTAATTGTTCATCAGATGAAAGACGAATGAATAATAACACGATTAATTTACTGTGT AAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)