These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1287 fasta sequence [CAACTCACATCGATCCATCCATCGGCGGCGGCCGCGTAGAACACATAGGCGACCACGTACTCAGGCATCGCTATAGCACAAGCCTTGTTGACGTGACTTCGCCGGAGCAGAAGCGGTGCACGCCGCCCGCGCTCGGCAGCGGCGTCTGGCAGGAGGACGTGCATCTGACCATCAGCCATCACGGGAAGAAAGCCGAGGTCGATGGCTGTCCGAGGTAAGAGCGCTAATTAGATTGTTTCTTCTTATATTTTGCAGCACATGCATGCACGGGCAGATGGAGAACCACAACGGAGAAGAAGCAGATCCATCTACACACATGAAGAACACACACAAGAGAAAACATGTACAGGGCCTCGGCGGAAGGGCACGCCAACGTGTGCGCCGCCGGCCGGCGGCAGCATGGCGCACCAAAAGTGTGGCCCGCCGGGCGTCGTTCGATGCTGAAAATCAATCGATCAACACACATCCATCCAACAATTCTCATCGGTGATCCATCCAGCGCCGACACGCACCGGCGGCAGCGAGCGACTTCGGCCGGAGCTCCGGCGTCTGGCAGGAGAGGGCACGCGCGGTGACCCGATCATCGGCAAGCACAGGAGGGAGTACTTCGACGAGGAAGAAGGAACTTGATGGCTACCAAGGTAGAAGCTAGCAAGATCGTTTCGTTTTTCTTTCATCTACAGCATGCACACATCCATCTACACATATGGTCGCCGCCGGTGAAAGTTGCGGTGGCCGATTCATCTACACGCGATAGAAGCCTCATCGATGCCGGCGCCCATCCGAGTCGACAAGATGTCTGGACCCGACGCCGCCAATTTAAGCCGCTGGTGGTGCATCTACTAGAAGCCGCGACGTCGCCAAGGTGCCAGACGTCCTCGCTTTGCTGCAAGTTTCACCGTGCCGGAGCAGACTGACTATGTCGAAGTCATCGTGACGCCGCGCCCTGCTGGAGCACGTCGAAGATCGCCGGAGAAGGTCGTCGTGAAGTTATTCCGTCGGAGCACGCCGAAGATCGCCGGAGCTACCGCCGACTGCCATGACTTCTCCCCGCTTTTATGCCGGAGGTCAAGCATCACGTACGTAGGGCGTCGAAACCAGCAGATGACAACGAAGGCAAGTGTGGCTGCAGCACAGGAGGGAGGATGACGAGCTGAAACTAGCAGATGCATGCTAATTAAGCTAATTATTGTGGTAACGTGGCCGACCAACCGGAGGGTGGCACATCATCACCATGCTACAGTTGCACAAGAAGTCGTCAACGCGACGGCTAAAGTAAACAAATCC] [+] EMBL AK105481 [CAACTCACATCGATCCATCCATCGGCGGCGGCCGCGTAGAACACATAGGCGACCACGTACTCAGGCATCGCTATAGCACAAGCCTTGTTGACGTGACTTCGCCGGAGCAGAAGCGGTGCACGCCGCCCGCGCTCGGCAGCGGCGTCTGGCAGGAGGACGTGCATCTGACCATCAGCCATCACGGGAAGAAAGCCGAGGTCGATGGCTGTCCGAGGTAAGAGCGCTAATTAGATTGTTTCTTCTTATATTTTGCAGCACATGCATGCACGGGCAGATGGAGAACCACAACGGAGAAGAAGCAGATCCATCTACACACATGAAGAACACACACAAGAGAAAACATGTACAGGGCCTCGGCGGAAGGGCACGCCAACGTGTGCGCCGCCGGCCGGCGGCAGCATGGCGCACCAAAAGTGTGGCCCGCCGGGCGTCGTTCGATGCTGAAAATCAATCGATCAACACACATCCATCCAACAATTCTCATCGGTGATCCATCCAGCGCCGACACGCACCGGCGGCAGCGAGCGACTTCGGCCGGAGCTCCGGCGTCTGGCAGGAGAGGGCACGCGCGGTGACCCGATCATCGGCAAGCACAGGAGGGAGTACTTCGACGAGGAAGAAGGAACTTGATGGCTACCAAGGTAGAAGCTAGCAAGATCGTTTCGTTTTTCTTTCATCTACAGCATGCACACATCCATCTACACATATGGTCGCCGCCGGTGAAAGTTGCGGTGGCCGATTCATCTACACGCGATAGAAGCCTCATCGATGCCGGCGCCCATCCGAGTCGACAAGATGTCTGGACCCGACGCCGCCAATTTAAGCCGCTGGTGGTGCATCTACTAGAAGCCGCGACGTCGCCAAGGTGCCAGACGTCCTCGCTTTGCTGCAAGTTTCACCGTGCCGGAGCAGACTGACTATGTCGAAGTCATCGTGACGCCGCGCCCTGCTGGAGCACGTCGAAGATCGCCGGAGAAGGTCGTCGTGAAGTTATTCCGTCGGAGCACGCCGAAGATCGCCGGAGCTACCGCCGACTGCCATGACTTCTCCCCGCTTTTATGCCGGAGGTCAAGCATCACGTACGTAGGGCGTCGAAACCAGCAGATGACAACGAAGGCAAGTGTGGCTGCAGCACAGGAGGGAGGATGACGAGCTGAAACTAGCAGATGCATGCTAATTAAGCTAATTATTGTGGTAACGTGGCCGACCAACCGGAGGGTGGCACATCATCACCATGCTACAGTTGCACAAGAAGTCGTCAACGCGACGGCTAAAGTAAACAAATCC] consensusID : consensus_5111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 589 fasta sequence [TACGTGGACATCGTCAAGTCGCCGAACCGCCCGCGGAGCCATGGCGCTGCCCTCGTCGGAGTCTGATCGACATCATCCGGTCAAGCCGCCGCATGCACACATCCGTCTGCACATCTTGTTGTCGCCGGTGAAGTCGCGGTGGCCGATCCATCTACACGCACAGAAGCCTCACCGATGCCGCCGCATCTACC-TGAAACTGCGACGTCGCCGAGATGCTGGACGTCCTCGCTTTGTCGGCTGCAAGCTTCACCGCGCTGGAGCGGGCTAACCATGGAGGAGGTCGTCGTGAA-CCGCCCTGCCGGAGTGCGCCGAGGATCGCCGGAGCTACCGCCGACTGCCATGACTTCCATCTGTTCTCATGCCGGAGGTCAAGCATCACGCATGGCATCGAAACCAGCGGATGACGATGGAGGCAAGTATAGCTGCAGCACAGGAGGAAGGACGACGAGCCAGTGCTGTTGAACACCACGGCAACGAGCTAGCAGATGCATGCTA-ATTAAACTAATTATTGTGGCAACGTGGCCGACCAACCGGAGGGTGACACATCATCACCATGCTACAGTTCTATGCATAAGAAGTTGTCCAAAAA] [+] EMBL BM418689 [TACGTGGACATCGTCAAGTCGCCGAACCGCCCGCGGAGCCATGGCGCTGCCCTCGTCGGAGTCTGATCGACATCATCCGGTCAAGCCGCCGCATGCACACATCCGTCTGCACATCTTGTTGTCGCCGGTGAAGTCGCGGTGGCCGATCCATCTACACGCACAGAAGCCTCACCGATGCCGCCGCATCTACC TGAAACTGCGACGTCGCCGAGATGCTGGACGTCCTCGCTTTGTCGGCTGCAAGCTTCACCGCGCTGGAGCGGGCTAACCATGGAGGAGGTCGTCGTGAA CCGCCCTGCCGGAGTGCGCCGAGGATCGCCGGAGCTACCGCCGACTGCCATGACTTCCATCTGTTCTCATGCCGGAGGTCAAGCATCACGCATGGCATCGAAACCAGCGGATGACGATGGAGGCAAGTATAGCTGCAGCACAGGAGGAAGGACGACGAGCCAGTGCTGTTGAACACCACGGCAACGAGCTAGCAGATGCATGCTA ATTAAACTAATTATTGTGGCAACGTGGCCGACCAACCGGAGGGTGACACATCATCACCATGCTACAGTTCTATGCATAAGAAGTTGTCCAAAA ] [+] EMBL BM419583 [ GTTGTCGCCGGTGAAGTCGCGGTGGCCGATCCATCTACACGCACAGAAGCCTCACCGATGCCGCCGCATCTACCGTGAAACTGCGACGTCGCCGAGATGCTGGACGTCCTCGCTTTGTCGGCTGCAAGCTTCACCGCGCTGGAGCGGGCTAACCATGGAGGAGGTCGTCGTGAAGCCGCCCTGCCGGAGTGCGCCGAGGATCGCCGGAGCTACCGCCGACTGCCATGACTTCCATCTGTTCTCATGCCGGAGGTCAAGCATCACGCATGGCATCGAAACCAGCGGATGACGATGGAGGCAAGTATAGCTGCAGCACAGGAGGAAGGACGACGAGCCAGTGCTGTTGAACACCACGGCAACGAGCTAGCAGATGCATGCTATATTAAACTAATTATTGTGGCAACGTGGCCGACCAACCGGAGGGTGACACATCATCACCATGCTACAGTTCTATGCATAAGAAGTTGTCCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5111#0 CAACTCACATCGATCCATCCATCGGCGGCGGCCGCGTAGAACACATAGGCGACCACGTAC 60 consensus_5111#1 ------------------------------------------------------------ consensus_5111#0 TCAGGCATCGCTATAGCACAAGCCTTGTTGACGTGACTTCGCCGGAGCAGAAGCGGTGCA 120 consensus_5111#1 ------------------------------------------------------------ consensus_5111#0 CGCCGCCCGCGCTCGGCAGCGGCGTCTGGCAGGAGGACGTGCATCTGACCATCAGCCATC 180 consensus_5111#1 ------------------------------------------------------------ consensus_5111#0 ACGGGAAGAAAGCCGAGGTCGATGGCTGTCCGAGGTAAGAGCGCTAATTAGATTGTTTCT 240 consensus_5111#1 ------------------------------------------------------------ consensus_5111#0 TCTTATATTTTGCAGCACATGCATGCACGGGCAGATGGAGAACCACAACGGAGAAGAAGC 300 consensus_5111#1 ------------------------------------------------------------ consensus_5111#0 AGATCCATCTACACACATGAAGAACACACACAAGAGAAAACATGTACAGGGCCTCGGCGG 360 consensus_5111#1 ------------------------------------------------------------ consensus_5111#0 AAGGGCACGCCAACGTGTGCGCCGCCGGCCGGCGGCAGCATGGCGCACCAAAAGTGTGGC 420 consensus_5111#1 ------------------------------------------------------------ consensus_5111#0 CCGCCGGGCGTCGTTCGATGCTGAAAATCAATCGATCAACACACATCCATCCAACAATTC 480 consensus_5111#1 ------------------------------------------------------------ consensus_5111#0 TCATCGGTGATCCATCCAGCGCCGACACGCACCGGCGGCAGCGAGCGACTTCGGCCGGAG 540 consensus_5111#1 ------------------------------------------------------------ consensus_5111#0 CTCCGGCGTCTGGCAGGAGAGGGCACGCGCGGTGACCCGATCATCGGCAAGCACAGGAGG 600 consensus_5111#1 ---------------------------------------------TACGTGGACATCGTC 15 * * *** consensus_5111#0 GAGTACTTCGACGAGGAAGAAGGAACTTGATGGCTACCAAGGTAGAAGCTAG-CAAGATC 659 consensus_5111#1 AAGT-CGCCGAACCGCCCGCGGAGCCATGGCGCTGCCCTCGTCGGAGTCTGATCGACATC 74 *** * *** * * * * ** * ** * ** ** * * *** consensus_5111#0 GTTTCGTTTTTCTTTCATCTACAGCATGCACACATCCATCTACACATATGGTCGCCGCCG 719 consensus_5111#1 ATCCGG-------TCAAGCCGCCGCATGCACACATCCGTCTGCACATCTTGTTGTCGCCG 127 * * * * * * ************** *** ***** * ** * ***** consensus_5111#0 GTGAAAGTTGCGGTGGCCGATTCATCTACACGCGATAGAAGCCTCATCGATGCCGGCGCC 779 consensus_5111#1 GTGAA-GTCGCGGTGGCCGATCCATCTACACGC-ACAGAAGCCTCACCGATGCCGCCGC- 184 ***** ** ************ *********** * ********** ******** *** consensus_5111#0 CATCCGAGTCGACAAGATGTCTGGACCCGACGCCGCCAATTTAAGCCGCTGGTGGTGCAT 839 consensus_5111#1 ----------------------------------------------------------AT 186 ** consensus_5111#0 CTACTAGAAGCCGCGACGTCGCCAAGGTGCCAGACGTCCTCGCTTTG----CTGCAAGTT 895 consensus_5111#1 CTACCTGAAACTGCGACGTCGCCGAGATGCTGGACGTCCTCGCTTTGTCGGCTGCAAGCT 246 **** *** * *********** ** *** *************** ******* * consensus_5111#0 TCACCGTGCCGGAGCAGACTGACTATGTCGAAGTCATCGTGACGCCGCGCCCTGCTGGAG 955 consensus_5111#1 TCACCGCGCTGGAGCGGGCTAACCATG--------------------------------- 273 ****** ** ***** * ** ** *** consensus_5111#0 CACGTCGAAGATCGCCGGAGAAGGTCGTCGTGAAGTTATTCCGTCGGAGCACGCCGAAGA 1015 consensus_5111#1 -----------------GAGGAGGTCGTCGTGAA-CCGCCCTGCCGGAGTGCGCCGAGGA 315 *** ************* * * ***** ****** ** consensus_5111#0 TCGCCGGAGCTACCGCCGACTGCCATGACTTCTCCCCGCTTTTATGCCGGAGGTCAAGCA 1075 consensus_5111#1 TCGCCGGAGCTACCGCCGACTGCCATGACTTCCATCTGTTCTCATGCCGGAGGTCAAGCA 375 ******************************** * * * * ***************** consensus_5111#0 TCACGTACGTAGGGCGTCGAAACCAGCAGATGACAACGAAGGCAAGTGTGGCTGCAGCAC 1135 consensus_5111#1 TCACGCATG----GCATCGAAACCAGCGGATGACGATGGAGGCAAGTATAGCTGCAGCAC 431 ***** * * ** *********** ****** * * ******** * ********** consensus_5111#0 AGGAGGGAGGATGACGAGCTGA-----------------------AACTAGCAGATGCAT 1172 consensus_5111#1 AGGAGGAAGGACGACGAGCCAGTGCTGTTGAACACCACGGCAACGAGCTAGCAGATGCAT 491 ****** **** ******* * ************* consensus_5111#0 GCTAATTAAGCTAATTATTGTGGTAACGTGGCCGACCAACCGGAGGGTGGCACATCATCA 1232 consensus_5111#1 GCTAATTAAACTAATTATTGTGGCAACGTGGCCGACCAACCGGAGGGTGACACATCATCA 551 ********* ************* ************************* ********** consensus_5111#0 CCATGCTACAGTT----GCACAAGAAGTCGTCAACGCGACGGCTAAAGTAAACAAATCC 1287 consensus_5111#1 CCATGCTACAGTTCTATGCATAAGAAGTTGTCCAAAAA--------------------- 589 ************* *** ******* *** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||