cluster # 5113

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Oryza sativa
cluster # 5113 cluster # 5113 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5113#0 length = 515 sequences # 3

consensusID : consensus_5113#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 515
fasta sequence

                              [GGACAAGTGATCTTCAAGATTGATGGAAGGATTAAAAAAAAGCTTCAATCTTCTAAGCTATTGTCCAGCTACTGTTATCATAAAAGGCTAAACTGATTGAAGAAACCAATGGAATGGAATTCTGAACTTGCTAGGACATGAACCGTAAAGATGCA-AACCATCTACATAAAGGTTGATCCCATAGGCAGCTTATCAAATACATCAATTGTTTGGATACATTTGGGTACTGTTTTTCA-TTATGGGGAGTAATTTAGGTAAATTCAAGTGGTTTATGAAACCCTGCTTTTACGTCAACTTATATGGAGTAGACTGCATAAAAAAGGTTAGATCA-AGTGGCGCGAGCA-TTGCAGCTGCTCATTGTTTTTTTCCAGTTGTAATCGGCACA-CCGATGACA-CA-GGGATATGTGCTTAGGGAAGGGTTGTTGCTGGCACAACCCCTGTTGCTTCATTTTGAGCATGATGGTGA-CGGTGTAACTATAATATTTTATCAAATC-ATATGTTCACTTACTGTCAAAA]

[+] EMBL BQ908809             [GGACAAGTGATCTTCAAGATTGATGGAAGGATTAAAAAAAAGCTTCAATCTTCTAAGCTATTGTCCAGCTACTGTTATCATAAAAGGCTAAACTGATTGAAGAAACCAATGGAATGGAATTCTGAACTTGCTAGGACATGAACCGTAAAGATGCA AACCATCTACATAAAGGTTGATCCCATAGGCAGCTTATCAAATACATCAATTGTTTGGATACATTTGGGTACTGTTTTTCA TTATGGGGAGTAATTTAGGTAAATTCAAGTGGTTTATGAAACCCTGCTTTTACGTCAACTTATATGGAGTAGACTGCATAAAAAAGGTTAGATCA AGTGGCGCGAGCA TTGCAGCTGCTCATTGTTTTTTTCCAGTTGTAATCGGCACA CCGATGACA CA GGGATATGTGCTTAGGGAAGGGTTGTTGCTGGCACAACCCCTGTTGCTTCATTTTGAGCATGATGGTGA CGGTGTAACTATAATATTTTATCAAATCAATATGTTCACTTACTGTCAAAA]
[+] EMBL BQ908567             [                                                           ATTGTCCAGCTACTGTTATCAT AAAGGCTAAACTGATTGAAGAAACCAATGGAATGGAATTCTGAACTTGCTAGGACATGAACCGTAAAGATGCANAACCATCTACATAAAGGTTGATCCCATAGGCAGCTTATCAAATACATCAATTGTTTGGATACATTTGGGTACTGTTTTTCACTTATGGGGAGTAATTTAGGTAAATTCAAGTGGTTTATGAAACCCTGCTTTTACGTCAACTTATATGGAGTAGACTGCATAAAAAAGGTTAGATCACAGTGGCGCGAGCACTTGCAGCTGCTCATTGTTTTTTTCCAGTTGTAATCGGCACACCCGATGACACCACGGGATATGTGCTTAGGGAAGGGTTGTTGCTGGCACAACCCCTGTTGCTTCATTTTGAGCATGATGGTGA CGGTGTAACTATAATATTTTATCAAATC ATATGTTCACTTACTGTCAAAA]
[+] EMBL BQ908512             [                                                                                                                                                                                                                                                                                                                                           CA AGTGGCGCGAGCA TTGCAGCTGCTCATTGTTTTTTTCCAGTTGTAATCGGCACA CCGATGACA CA GGGATATGTGCTTAGGGAAGGGTTGTTGCTGGCACAACCCCTGTTGCTTCATTTTGAGCATGATGGTGACCGGTGTAACTATAATATTTTATC AATC ATATGTTCACTTACTGTCAAA ]




>consensus_5113#0
GGACAAGTGATCTTCAAGATTGATGGAAGGATTAAAAAAAAGCTTCAATCTTCTAAGCTA
TTGTCCAGCTACTGTTATCATAAAAGGCTAAACTGATTGAAGAAACCAATGGAATGGAAT
TCTGAACTTGCTAGGACATGAACCGTAAAGATGCAAACCATCTACATAAAGGTTGATCCC
ATAGGCAGCTTATCAAATACATCAATTGTTTGGATACATTTGGGTACTGTTTTTCATTAT
GGGGAGTAATTTAGGTAAATTCAAGTGGTTTATGAAACCCTGCTTTTACGTCAACTTATA
TGGAGTAGACTGCATAAAAAAGGTTAGATCAAGTGGCGCGAGCATTGCAGCTGCTCATTG
TTTTTTTCCAGTTGTAATCGGCACACCGATGACACAGGGATATGTGCTTAGGGAAGGGTT
GTTGCTGGCACAACCCCTGTTGCTTCATTTTGAGCATGATGGTGACGGTGTAACTATAAT
ATTTTATCAAATCATATGTTCACTTACTGTCAAAA

clustalw multiple alignements is not computed in this case