Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5119 cluster # 5119       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5119#0 length = 1891 sequences # 3  

consensusID : consensus_5119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1891
fasta sequence
                              [TCACTAATTTTGGGAATGAAATCTGGGGACAGTGAATACCGGACTAATGTGGAGAATTTCCCTTCTTAATTGCCCCAACTGTTTGTTTCCTGATTTGATATAGAGATAAGTTTGTGCATTGATTCATTCTTTGTGCCCTTGAACTGTTCCTTCAATTTATTGCAGCGATTATCAGTTGGAGCAGAAAGGTGCCAGCATGGGTTTGAGGAGCAAGCAGCCAAAAGCATTAGCTTTCCGCTGCTATGCGGCGAGCCACCGATCTCTAACTCTTGCAGTGTGGAGCCTTGCAGCACTGGTAGTAGTTGTGAATTTCCATCTTCTTATCATACATAAGGAGGATGAGAGCACCAGCATACATGAGATCAATCGGTCAATTGTAAGCGAGCTGGAGGAGGTTGAGGAGGAAAAGTTCCGGGTATCGCCTCCCCGGAGCCGGAGGAATCCCCGGGCTGTGCGGCGCAAGGGGGAGCAGAAGCCACCTTCTGTAGTGGATGAGTTCTTGGATGAGTCTTCTGCGGTGCACGACATGTTCTTTCCAGAACGCAACATGGCTATAGATCCAATCAATGGTGGGAATGACAGCATGTACTTCTACTACCCAGGGAGAGTTTGGCTTGACACTGATGGTAATCCAATCCAAGCTCATGGAGGAGGTGTACTGTACGATGAGAAAACCGAGACCTATTTCTGGTATGGGGAGAATAAGGATGGCAAAACATACAAAGCTCACAGCAAGGGAGCTGATCGGGTTGACATTGTGGGAGTAAGTTGCTATTCATCAAAGGACCTGTGGACGTGGAGAAATGAAGGAGTTGTTCTCCGAGGTGAGAAAAAGAATGTGACACATGATCTCCATAAATCCAATGTCCTGGAGAGACCCAAAGTTATATATAATGATCGGACTGGCAAATATGTTATGTGGATGCACATAGACGATACAAATTACACCAAAGCATCAGTTGGTGTGGCCATCAGTGACTCTCCCACAGGCCCATTCAGTTACCTGTACAGCAAGCAGCCACATGACTGTGAAAGTAGAGACATGACCATCTTCAAGGATGACAATGGGAAGGCCTACCTGATATATTCTTCTGAGGACAACAGCGAGCTCCACATTGGTCAGTTAACTGATGACTACCTTGATGTAACTGATAATATGCGAAGGCTTCTCATTGCACAACATCGAGAAGCTCCTGCGCTTTTCAAGTATGAGGGCACCTACTACATGATAACCTCTGGTTGCACTGGCTGGGCACCAAACACTGCACTAGCTCATGCGGCGACAGCAATAATGGGACCTTGGGAGACGCTGGGAAATCCTTGTGTGGGAGGGAATGACATATTCAGATCAACAACATTCTTCTCCCAGAGTACATTTGTGTTGCCGATTCCAGGACTGTCAGGTTCATTCATCTTCATGGCTGATCGGTGGAGCCCATCCGAGCTGAGAGATTCGCGATATGTATGGCTGCCTTTGACAGTAGGTGGACTACCTGATGAGGCTGCAGATTACAGCTTCATGTTCCCTCTTTGGTCCCGGGTGTCGATTTACTGGCACAGACGGTGGCGGCTCCCTGAGGGGTGGAGGGACTCCTGAAATTTACTTGACTGAAATTGGTATACAATTTATACATGGTGGTCATACTAGAGATACCATACCAAATTATTGACACGACACATTGGAGTGCACTGTATAGATCAGGTTTAGATCAGGTAGAGTTGTAAATGTGCAGTTTTTTTGGTCTGTTCTTAAATCACATATATGGTTGTGGGCTTGTGGCCTGTTGGGCGAGGTGTGGTGTTGATTATTTTTTCCTTTTACTGAGAATAATAATGTAGATGCAGAAATATCAAATATGGGTTTGTCTTGTGGTCTAAAACCTAAAAAAAA]

[+] EMBL AK070373             [TCACTAATTTTGGGAATGAAATCTGGGGACAGTGAATACCGGACTAATGTGGAGAATTTCCCTTCTTAATTGCCCCAACTGTTTGTTTCCTGATTTGATATAGAGATAAGTTTGTGCATTGATTCATTCTTTGTGCCCTTGAACTGTTCCTTCAATTTATTGCAGCGATTATCAGTTGGAGCAGAAAGGTGCCAGCATGGGTTTGAGGAGCAAGCAGCCAAAAGCATTAGCTTTCCGCTGCTATGCGGCGAGCCACCGATCTCTAACTCTTGCAGTGTGGAGCCTTGCAGCACTGGTAGTAGTTGTGAATTTCCATCTTCTTATCATACATAAGGAGGATGAGAGCACCAGCATACATGAGATCAATCGGTCAATTGTAAGCGAGCTGGAGGAGGTTGAGGAGGAAAAGTTCCGGGTATCGCCTCCCCGGAGCCGGAGGAATCCCCGGGCTGTGCGGCGCAAGGGGGAGCAGAAGCCACCTTCTGTAGTGGATGAGTTCTTGGATGAGTCTTCTGCGGTGCACGACATGTTCTTTCCAGAACGCAACATGGCTATAGATCCAATCAATGGTGGGAATGACAGCATGTACTTCTACTACCCAGGGAGAGTTTGGCTTGACACTGATGGTAATCCAATCCAAGCTCATGGAGGAGGTGTACTGTACGATGAGAAAACCGAGACCTATTTCTGGTATGGGGAGAATAAGGATGGCAAAACATACAAAGCTCACAGCAAGGGAGCTGATCGGGTTGACATTGTGGGAGTAAGTTGCTATTCATCAAAGGACCTGTGGACGTGGAGAAATGAAGGAGTTGTTCTCCGAGGTGAGAAAAAGAATGTGACACATGATCTCCATAAATCCAATGTCCTGGAGAGACCCAAAGTTATATATAATGATCGGACTGGCAAATATGTTATGTGGATGCACATAGACGATACAAATTACACCAAAGCATCAGTTGGTGTGGCCATCAGTGACTCTCCCACAGGCCCATTCAGTTACCTGTACAGCAAGCAGCCACATGACTGTGAAAGTAGAGACATGACCATCTTCAAGGATGACAATGGGAAGGCCTACCTGATATATTCTTCTGAGGACAACAGCGAGCTCCACATTGGTCAGTTAACTGATGACTACCTTGATGTAACTGATAATATGCGAAGGCTTCTCATTGCACAACATCGAGAAGCTCCTGCGCTTTTCAAGTATGAGGGCACCTACTACATGATAACCTCTGGTTGCACTGGCTGGGCACCAAACACTGCACTAGCTCATGCGGCGACAGCAATAATGGGACCTTGGGAGACGCTGGGAAATCCTTGTGTGGGAGGGAATGACATATTCAGATCAACAACATTCTTCTCCCAGAGTACATTTGTGTTGCCGATTCCAGGACTGTCAGGTTCATTCATCTTCATGGCTGATCGGTGGAGCCCATCCGAGCTGAGAGATTCGCGATATGTATGGCTGCCTTTGACAGTAGGTGGACTACCTGATGAGGCTGCAGATTACAGCTTCATGTTCCCTCTTTGGTCCCGGGTGTCGATTTACTGGCACAGACGGTGGCGGCTCCCTGAGGGGTGGAGGGACTCCTGAAATTTACTTGACTGAAATTGGTATACAATTTATACATGGTGGTCATACTAGAGATACCATACCAAATTATTGACACGACACATTGGAGTGCACTGTATAGATCAGGTTTAGATCAGGTAGAGTTGTAAATGTGCAGTTTTTTTGGTCTGTTCTTAAATCACATATATGGTTGTGGGCTTGTGGCCTGTTGGGCGAGGTGTGGTGTTGATTATTTTTTCCTTTTACTGAGAATAATAATGTAGATGCAGAAATATCAAATATGGGTTTGT                         ]
[-] EMBL CB668204             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GATGACTACCTTGATGTAACTGATAATATGCGAAGGCTTCTCATTGCACAACATCGAGAAGCTCCTGCGCTTTTCAAGTATGAGGGCACCTACTACATGATAACCTCTGGTTGCACTGGCTGGGCACCAAACACTGCACTAGCTCATGCGGCGACAGCAATAATGGGACCTTGGGAGACGCTGGGAAATCCTTGTGTGGGAGGGAATGACATATTCAGATCAACAACATTCTTCTCCCAGAGTACATTTGTGTTGCCGATTCCAGGACTGTCAGGTTCATTCATCTTCATGGCTGATCGGTGGAGCCCATCCGAGCTGAGAGATTCGCGATATGTATGGCTGCCTTTGACAGTAGGTGGACTACCTGATGAGGCTGCAGATTACAGCTTCATGTTCCCTCTTTGGTCCCGGGTGTCGATTTACTGGCACAGACGGTGGCGGCTCCCTGAGGGGTGGAGGGACTCCTGAAATTTACTTGACTGAAATTGGTATACAATTTATACATGGTGGTCATACTAGAGATACCATACCAAATTATTGACACGACACATTGGAGTGCACTGTATAGATCAGGTTTAGATCAGGTAGAGTTGTAAATGTGCAGTTTTTTTGGTCTGTTCTTAAATCACATATATGGTTGTGGGCTTGTGGCCTGTTGGGCGAGGTGTGGTGTTGATTATTTTTTCCTTTTACTGAGAATAATAATGTAGATGCAAAGGTATCAAATATGGGTTTGTCTTGTGGTCTAAAACCTAAA     ]
[-] EMBL CA760253             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CTTTTCAAGTATGAGGGCACCTACTACATGATAACCTCTGGTTGCACTGGCTGGGCACCAAACACTGCACTAGCTCATGCGGCGACAGCAATAATGGAACCTTGGGAGACGCTGGGAAATCCTTGTGTGGGAGGGAACGACATATTCAGATCAACAACATTCTTCTCCCAGAGTACATTTGTGTTGCCGATTCCAGGACTGTCAGGTTCATTCATCTTCATGGCTGATCGGTGGAGCCCATCCGAGCTGAGAGATTCGCGTTATGTATGGCTGCCTTTGACAGTAGGTGGACTACCTGATGAGGCTGCAGATTACAGCTTCATGTTCCCTCTTTGGTCCCGGGTGTCGATTTACTGGCACAGACGGTGGCGGCTCCCTGAGGGGTGGAGGGACTCCTGAAATTTACTTGACTGAAATTGGTATACAATTTATACATGGTGGTCATCCTAGAGATACCATACCAAATTATTGACACGACACATTGGAGTGCACTGTATAGATCAGGTTTAGATCAGGTAGAGTTGTAAATGTGCAGTTTTTTTGGTCTGTTCTTAAATCACATATATGGTTGTGGGCTTGTGGCCTGTTGGGCGAGGTGTGGTGTTGATTATTTTTTCCTTTTACTGAGAATAATAATGTAGATGCAGAAATATCAAATATGGGTTTGTCTTGTGGTCTAAAAAAAAAAAAAAA]


>consensus_5119#0 TCACTAATTTTGGGAATGAAATCTGGGGACAGTGAATACCGGACTAATGTGGAGAATTTC CCTTCTTAATTGCCCCAACTGTTTGTTTCCTGATTTGATATAGAGATAAGTTTGTGCATT GATTCATTCTTTGTGCCCTTGAACTGTTCCTTCAATTTATTGCAGCGATTATCAGTTGGA GCAGAAAGGTGCCAGCATGGGTTTGAGGAGCAAGCAGCCAAAAGCATTAGCTTTCCGCTG CTATGCGGCGAGCCACCGATCTCTAACTCTTGCAGTGTGGAGCCTTGCAGCACTGGTAGT AGTTGTGAATTTCCATCTTCTTATCATACATAAGGAGGATGAGAGCACCAGCATACATGA GATCAATCGGTCAATTGTAAGCGAGCTGGAGGAGGTTGAGGAGGAAAAGTTCCGGGTATC GCCTCCCCGGAGCCGGAGGAATCCCCGGGCTGTGCGGCGCAAGGGGGAGCAGAAGCCACC TTCTGTAGTGGATGAGTTCTTGGATGAGTCTTCTGCGGTGCACGACATGTTCTTTCCAGA ACGCAACATGGCTATAGATCCAATCAATGGTGGGAATGACAGCATGTACTTCTACTACCC AGGGAGAGTTTGGCTTGACACTGATGGTAATCCAATCCAAGCTCATGGAGGAGGTGTACT GTACGATGAGAAAACCGAGACCTATTTCTGGTATGGGGAGAATAAGGATGGCAAAACATA CAAAGCTCACAGCAAGGGAGCTGATCGGGTTGACATTGTGGGAGTAAGTTGCTATTCATC AAAGGACCTGTGGACGTGGAGAAATGAAGGAGTTGTTCTCCGAGGTGAGAAAAAGAATGT GACACATGATCTCCATAAATCCAATGTCCTGGAGAGACCCAAAGTTATATATAATGATCG GACTGGCAAATATGTTATGTGGATGCACATAGACGATACAAATTACACCAAAGCATCAGT TGGTGTGGCCATCAGTGACTCTCCCACAGGCCCATTCAGTTACCTGTACAGCAAGCAGCC ACATGACTGTGAAAGTAGAGACATGACCATCTTCAAGGATGACAATGGGAAGGCCTACCT GATATATTCTTCTGAGGACAACAGCGAGCTCCACATTGGTCAGTTAACTGATGACTACCT TGATGTAACTGATAATATGCGAAGGCTTCTCATTGCACAACATCGAGAAGCTCCTGCGCT TTTCAAGTATGAGGGCACCTACTACATGATAACCTCTGGTTGCACTGGCTGGGCACCAAA CACTGCACTAGCTCATGCGGCGACAGCAATAATGGGACCTTGGGAGACGCTGGGAAATCC TTGTGTGGGAGGGAATGACATATTCAGATCAACAACATTCTTCTCCCAGAGTACATTTGT GTTGCCGATTCCAGGACTGTCAGGTTCATTCATCTTCATGGCTGATCGGTGGAGCCCATC CGAGCTGAGAGATTCGCGATATGTATGGCTGCCTTTGACAGTAGGTGGACTACCTGATGA GGCTGCAGATTACAGCTTCATGTTCCCTCTTTGGTCCCGGGTGTCGATTTACTGGCACAG ACGGTGGCGGCTCCCTGAGGGGTGGAGGGACTCCTGAAATTTACTTGACTGAAATTGGTA TACAATTTATACATGGTGGTCATACTAGAGATACCATACCAAATTATTGACACGACACAT TGGAGTGCACTGTATAGATCAGGTTTAGATCAGGTAGAGTTGTAAATGTGCAGTTTTTTT GGTCTGTTCTTAAATCACATATATGGTTGTGGGCTTGTGGCCTGTTGGGCGAGGTGTGGT GTTGATTATTTTTTCCTTTTACTGAGAATAATAATGTAGATGCAGAAATATCAAATATGG GTTTGTCTTGTGGTCTAAAACCTAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)