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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1904 fasta sequence
[CGGGACCAAAAAACCAAACCTGAATCCGGCTGATCCCTAAAACCAAAAATTCCCCCAACAATTTTACTCGCGCGGGGCTCATCGTCGCCATGGACGGCGATGCGGGCGGCCGGGGAGACGTGACCTTCGCCGGTCCCGGCGGCGGCCGTTCCCCTCGCCCCCGTCGACCTGTCCGTCGGGGAACCAGATACCCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTGGAAGGAGGAGAAGGGTTGGGAGAAGAAGGGCGCAGCGAGGAAGATCGACCTCGTCGGAGGATCATCCGCCTCGTCCGTCCAGGTCTAGCAGCTTGGGATACACAATGTCAAGGGGGCTTGTGGGCCCTTGATGGGCCGTCGGGCGATCGCCGGCCCTATAGCCCCTAGGCTTTATGGGCCGGAAAGGCTTCTTCGGCCCTTGCGGGGGCGAACTAGACATGGCGAAGTCGTCCTTCTTCGGCAGGTTTCGGCAGATTTGATCGAAGGGCCTCATGCCATCCGCCAACAATTACTGTTTGGAGGTGTTTGAGAGCCAACAAGCTTTTTACAGTCCCCTCCTTGATCCCCGGATGTGCATCAGCTGATCGTAGGCCTCGTGTTCGGCAAAGTGTACTTTATTCAGACCGCCCCAAACGGTCCCAAGGAATACGAGGACAAGTACAATCAAAAACCAAATCACTGGATGAGAAGAATGTAAGCGAGGTGAGTAGTGAGCTTGGCACTACAACTGCAGACATTCCAAAATTCAAGGCACTGATGATAAATGACTCACTCTCTAGGCTTGACTCAACTGAGAGGTCCAATGAGTCTACTTATGATGCTGGCACTCCTGGCAGCAACCAAGTGACCTCAAAATTTGTTAAGGACAAGCCCAAAGATGATTCAGATGATGTGGAGGAGTGTCTGCGCCAACTACAGGAATACTACTCTAAAGGGCATGTCCATACCAGCATCGAGGATGCTTGGAATGAAGTTGTAGCTTACGAGCATGTTGCTTTAACCGCCCTAGCTCTTGAGTGGGGTATGGAACCACCACCGGATCCCTTCCAGAAGCCGAAGTCTTCACTAGTTGATCAGGAAGCCCAGACACTTCGGGCACCACAGCAGACTTCTGATGCTGCTCAGCATAACATAGTGTCATGCAAGGAGGAACCGTCTCAGCAAATTTTGCCCATTCATCAACCAAGGACCGAGGTTTCTATAGAAGAAATTGTTGAGAGAGGGAAAAAATGGATGGGCGAGGAGGTGATGGTGGCTTTCAAGAAATATATTGAAGGAAAAGCTGATCTTGCGGGACATCAATATCACCTTGAACTTTGCCACCAGTGTTTCCATGTGGAAAGCTATTTCCAAAATTTCCACCATTATAATTTTAATGTCAAGATAAAAAAGCATGATTCAGATGAGTGGTCTGAGTCAATGTATTTTGCTGAAGTAAAGATGATATTCAGGAGAAAATATTACTTCTGCTGTCCCTTGGAACCACGTGAGAATGGTCACTGTTATGCATGCAGAAACCAAGGAATGGATGACCTGAGGCTGAGGCATCCAGCTACAGGTGGATTTGAGATGGGCTCACCTGACACTGTATTTCCTTACATGTATACCAGTGGCTGAGCTCGTGTTACCCAAAAAAGATGTGTATATGGATGATGGTTTGGAGTAATCACTTAGATTATCATGATATGTTGGATGCTGACATAGTTTGTTTTCAGCAGCACTATTTCGCTCACAACACTTGTTGTAGTACTGAA-GTCTAAAATATTGTGCAACTCGTTTGTCTGACAGTATTGTGATGAAATTGGTATGCATGGTTGAACATCCCAAAAAAAAAAAAAAAAAAAAAACAAAAAA]
[+] EMBL AK106845 [CGGGACCAAAAAACCAAACCTGAATCCGGCTGATCCCTAAAACCAAAAATTCCCCCAACAATTTTACTCGCGCGGGGCTCATCGTCGCCATGGACGGCGATGCGGGCGGCCGGGGAGACGTGACCTTCGCCGGTCCCGGCGGCGGCCGTTCCCCTCGCCCCCGTCGACCTGTCCGTCGGGGAACCAGATACCCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTGGAAGGAGGAGAAGGGTTGGGAGAAGAAGGGCGCAGCGAGGAAGATCGACCTCGTCGGAGGATCATCCGCCTCGTCCGTCCAGGTCTAGCAGCTTGGGATACACAATGTCAAGGGGGCTTGTGGGCCCTTGATGGGCCGTCGGGCGATCGCCGGCCCTATAGCCCCTAGGCTTTATGGGCCGGAAAGGCTTCTTCGGCCCTTGCGGGGGCGAACTAGACATGGCGAAGTCGTCCTTCTTCGGCAGGTTTCGGCAGATTTGATCGAAGGGCCTCATGCCATCCGCCAACAATTACTGTTTGGAGGTGTTTGAGAGCCAACAAGCTTTTTACAGTCCCCTCCTTGATCCCCGGATGTGCATCAGCTGATCGTAGGCCTCGTGTTCGGCAAAGTGTACTTTATTCAGACCGCCCCAAACGGTCCCAAGGAATACGAGGACAAGTACAATCAAAAACCAAATCACTGGATGAGAAGAATGTAAGCGAGGTGAGTAGTGAGCTTGGCACTACAACTGCAGACATTCCAAAATTCAAGGCACTGATGATAAATGACTCACTCTCTAGGCTTGACTCAACTGAGAGGTCCAATGAGTCTACTTATGATGCTGGCACTCCTGGCAGCAACCAAGTGACCTCAAAATTTGTTAAGGACAAGCCCAAAGATGATTCAGATGATGTGGAGGAGTGTCTGCGCCAACTACAGGAATACTACTCTAAAGGGCATGTCCATACCAGCATCGAGGATGCTTGGAATGAAGTTGTAGCTTACGAGCATGTTGCTTTAACCGCCCTAGCTCTTGAGTGGGGTATGGAACCACCACCGGATCCCTTCCAGAAGCCGAAGTCTTCACTAGTTGATCAGGAAGCCCAGACACTTCGGGCACCACAGCAGACTTCTGATGCTGCTCAGCATAACATAGTGTCATGCAAGGAGGAACCGTCTCAGCAAATTTTGCCCATTCATCAACCAAGGACCGAGGTTTCTATAGAAGAAATTGTTGAGAGAGGGAAAAAATGGATGGGCGAGGAGGTGATGGTGGCTTTCAAGAAATATATTGAAGGAAAAGCTGATCTTGCGGGACATCAATATCACCTTGAACTTTGCCACCAGTGTTTCCATGTGGAAAGCTATTTCCAAAATTTCCACCATTATAATTTTAATGTCAAGATAAAAAAGCATGATTCAGATGAGTGGTCTGAGTCAATGTATTTTGCTGAAGTAAAGATGATATTCAGGAGAAAATATTACTTCTGCTGTCCCTTGGAACCACGTGAGAATGGTCACTGTTATGCATGCAGAAACCAAGGAATGGATGACCTGAGGCTGAGGCATCCAGCTACAGGTGGATTTGAGATGGGCTCACCTGACACTGTATTTCCTTACATGTATACCAGTGGCTGAGCTCGTGTTACCCAAAAAAGATGTGTATATGGATGATGGTTTGGAGTAATCACTTAGATTATCATGATATGTTGGATGCTGACATAGTTTGTTTTCAGCAGCACTATTTCGCTCACAACACTTGTTGTAGTACTGAA GTCTAAAATATTGTGCAACTCGTTTGTCTGACAGTATTGTGATGAAATTGGTA ]
[+] EMBL BQ908936 [ ATATTGAGGAGAAAATATTACTTCTGCTGTCCCTTGGAACCACGTGAGAATGGTCACTGTTATGCATGCAGAAACCAAGGAATGGATGAC CTGAGGCATCCAGCTACAGGTGGATTTGAGATGGGCTCACCTGACACTGTATTTCCTTACATGTATACCNGTGACTGAGCTCGTGTTACCCCAAAAAGATATGTATATGGATGATGGTTTGGAGTAATCACTTAGATTATCATGATGTGTTGGATGCTGACATAGTTTATTTTCAGCAGCACTATTTCGCT CGCTTGTTGTAGTACTGAAGGTCTAAAATATTGTGC ATTCGTTTGTCTGACAGTATTGTGATGAAATTGGTATGCATGGTTGAACATCCCAAAAAAAAAAAAAAAAAAAAAACAAAAAA]
consensusID : consensus_5123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence
[GTATGGGCTAATGACACGAGCGTNAGCTAGGTGGTGGGGATTGTTTCGGANGGATATTCGNGGGGGTCTTGTCTAACCGTCGAGCAGCATTGTGATGTGTGCCGTGTGAAGCTANTAGTTAGTTACCTACGGTNTGTACTTGGAAGAGCTTGCAGGTGGGTTGTAGCACCACACGAGAGAAGAGATAACTCGTTATATTCGGATGATCGGTGTTNGGAGTATATCTACTTAGATTNATCATGGATGTGTTGGATGCTGACATAGTTTATTTTCTGGCTAGCACTATGTTCGCTCGCTTGTTGTAGTACTGAAGGTCTAAAATAGTTGTGCAATTCGTTTGTCTGACAGTAGTTGTGAGTGAAATGTGGTATGCAGTGGNTTGAACATCCAAAAAAAAAA]
[+] EMBL BQ908372 [GTATGGGCTAATGACACGAGCGTNAGCTAGGTGGTGGGGATTGTTTCGGANGGATATTCGNGGGGGTCTTGTCTAACCGTCGAGCAGCATTGTGATGTGTGCCGTGTGAAGCTANTAGTTAGTTACCTACGGTNTGTACTTGGAAGAGCTTGCAGGTGGGTTGTAGCACCACACGAGAGAAGAGATAACTCGTTATATTCGGATGATCGGTGTTNGGAGTATATCTACTTAGATTNATCATGGATGTGTTGGATGCTGACATAGTTTATTTTCTGGCTAGCACTATGTTCGCTCGCTTGTTGTAGTACTGAAGGTCTAAAATAGTTGTGCAATTCGTTTGTCTGACAGTAGTTGTGAGTGAAATGTGGTATGCAGTGGNTTGAACATCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5123#0 CGGGACCAAAAAACCAAACCTGAATCCGGCTGATCCCTAAAACCAAAAATTCCCCCAACA 60
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 ATTTTACTCGCGCGGGGCTCATCGTCGCCATGGACGGCGATGCGGGCGGCCGGGGAGACG 120
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 TGACCTTCGCCGGTCCCGGCGGCGGCCGTTCCCCTCGCCCCCGTCGACCTGTCCGTCGGG 180
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 GAACCAGATACCCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT 240
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 CTTCTTCTTCTTCTTCTTCTTCTTCCCTGGAAGGAGGAGAAGGGTTGGGAGAAGAAGGGC 300
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 GCAGCGAGGAAGATCGACCTCGTCGGAGGATCATCCGCCTCGTCCGTCCAGGTCTAGCAG 360
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 CTTGGGATACACAATGTCAAGGGGGCTTGTGGGCCCTTGATGGGCCGTCGGGCGATCGCC 420
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 GGCCCTATAGCCCCTAGGCTTTATGGGCCGGAAAGGCTTCTTCGGCCCTTGCGGGGGCGA 480
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 ACTAGACATGGCGAAGTCGTCCTTCTTCGGCAGGTTTCGGCAGATTTGATCGAAGGGCCT 540
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 CATGCCATCCGCCAACAATTACTGTTTGGAGGTGTTTGAGAGCCAACAAGCTTTTTACAG 600
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 TCCCCTCCTTGATCCCCGGATGTGCATCAGCTGATCGTAGGCCTCGTGTTCGGCAAAGTG 660
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 TACTTTATTCAGACCGCCCCAAACGGTCCCAAGGAATACGAGGACAAGTACAATCAAAAA 720
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 CCAAATCACTGGATGAGAAGAATGTAAGCGAGGTGAGTAGTGAGCTTGGCACTACAACTG 780
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 CAGACATTCCAAAATTCAAGGCACTGATGATAAATGACTCACTCTCTAGGCTTGACTCAA 840
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 CTGAGAGGTCCAATGAGTCTACTTATGATGCTGGCACTCCTGGCAGCAACCAAGTGACCT 900
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 CAAAATTTGTTAAGGACAAGCCCAAAGATGATTCAGATGATGTGGAGGAGTGTCTGCGCC 960
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 AACTACAGGAATACTACTCTAAAGGGCATGTCCATACCAGCATCGAGGATGCTTGGAATG 1020
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 AAGTTGTAGCTTACGAGCATGTTGCTTTAACCGCCCTAGCTCTTGAGTGGGGTATGGAAC 1080
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 CACCACCGGATCCCTTCCAGAAGCCGAAGTCTTCACTAGTTGATCAGGAAGCCCAGACAC 1140
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 TTCGGGCACCACAGCAGACTTCTGATGCTGCTCAGCATAACATAGTGTCATGCAAGGAGG 1200
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 AACCGTCTCAGCAAATTTTGCCCATTCATCAACCAAGGACCGAGGTTTCTATAGAAGAAA 1260
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 TTGTTGAGAGAGGGAAAAAATGGATGGGCGAGGAGGTGATGGTGGCTTTCAAGAAATATA 1320
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 TTGAAGGAAAAGCTGATCTTGCGGGACATCAATATCACCTTGAACTTTGCCACCAGTGTT 1380
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 TCCATGTGGAAAGCTATTTCCAAAATTTCCACCATTATAATTTTAATGTCAAGATAAAAA 1440
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 AGCATGATTCAGATGAGTGGTCTGAGTCAATGTATTTTGCTGAAGTAAAGATGATATTCA 1500
consensus_5123#1 --------------GTATGGGCTAATGACACGAGCGTNAGCTAGGTGGTGGGGATTGTTT 46
* *** ** * * * * * ** * *** *
consensus_5123#0 GGAGAAAATATTACTTCTGCTGTCCCTTGGAACCACGTGAGAATGGTCACTGTTATGCAT 1560
consensus_5123#1 CGGANGGATATT--CGNGGGGGTCTTGTCTAACCGT---CGAGCAG-CATTGTGATGTGT 100
* ***** * *** * **** ** * ** *** *** *
consensus_5123#0 GCAGAAACCAAGGAATGGATGACCTGAGGCTGAGGCATCCAGCTACAGGTGGATTTGAGA 1620
consensus_5123#1 GCCGTGTGAAGCTANTAGTTAGTT---ACCTACGGTNTGTACTTGGAAG-AGCTTGCAGG 156
** * * * * * * ** ** * * * * * * ** **
consensus_5123#0 TGGGCTCACCTGACACTGTATTTCCTTACATGTATACCAGTGGCTGAGCTCGTGTTACCC 1680
consensus_5123#1 TGGGT-----------TGTAGCACCACACGAGAGAAGAGAT-----AACTCGTTATATTC 200
**** **** ** ** * * * * ***** ** *
consensus_5123#0 AAAAAAGATGTGTATATGGATGATGGTTTGGAGTAATCACTTAGATTA-TCATG-ATATG 1738
consensus_5123#1 GGA--TGATCGGTGTTNGGA----------GTATATCTACTTAGATTNATCATGGATGTG 248
* *** ** * *** * ** ********* ***** ** **
consensus_5123#0 TTGGATGCTGACATAGTTTGTTTTCAG--CAGCACTAT-TTCGCTCACAACACTTGTTGT 1795
consensus_5123#1 TTGGATGCTGACATAGTTTATTTTCTGGCTAGCACTATGTTCGCT-----CGCTTGTTGT 303
******************* ***** * ******** ****** * ********
consensus_5123#0 AGTACTGAAG-TCTAAAATA-TTGTGCAACTCGTTTGTCTGACAGTA-TTGTGA-TGAAA 1851
consensus_5123#1 AGTACTGAAGGTCTAAAATAGTTGTGCAATTCGTTTGTCTGACAGTAGTTGTGAGTGAAA 363
********** ********* ******** ***************** ****** *****
consensus_5123#0 T-TGGTATGCAT--GGTTGAACATCCCAAAAAAAAAAAAAAAAAAAAAACAAAAAA 1904
consensus_5123#1 TGTGGTATGCAGTGGNTTGAACATCCAAAAAAAAAA-------------------- 399
* ********* * ********** *********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||