These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1674 fasta sequence [CGCGTTCGCGTGCTGCCAAATCCTCCTCCCCCTCCTCCGTCCCCACAACATTCTGTCGCGCCGATTCGACCGTTGCCGCCTCGCCCGCTCCGCGCACGCGCGCACGCCGCTCCCGTTCCCCTCGCGCACGCGCGGGCCATGGCGATCGACCTGGCGCCGCTGGCTGGGGAGTTGGAGGTCGCGGGGGCGGCGGTTGGAGGGAAGAAAGAGGAGGGGGAGGGGGAGGAGGGCGGGGTGTGCGGCGGGGAGGCCGTGGTGGTGGCCGCGGCGGACGCGGAGGTGGAGGGCCACCCCTACGACTTCCACGTGTCCGGGCCGCGGAACCTGCCGCCGCCCAACTGGAGGGAGATCATCCGTTCGAGCTGGAAGGATCCCAATTACAAAAGGATGGTAATGGCCTGCTTCATTCAAGCAGTCTACCTGCTTGAACTGGACAGGCAAGATGAGAAAGGAGAAGAGGATGGCCTTGCTCCAAAATGGTGGAAGCCCTTCAAATACAAGGTCACACAGACATTGGTCGATGAGAGAGATGGTTCCATCTATGGTGCCGTCCTTGAGTGGGATCGTTCTTCTGCTTTGTCTGACCTTATCCTCATAAGACCAAGTGGCGCGCCAAGGGCTGTGTTAGCTCTCCGAGGAACACTGCTTCAGAAGCCCACCATCAAGAGAGACCTACAAGATGATCTTCGCTTCCTGGTGTGGGAGAGCTTAAAAGGATCAGTCAGATATATTGGCGCTTTAGAAGCACTGAAGACAGCAGTTGAGAGGTTTGGTAGCGCTAATGTCAGTGTTGCTGGGCACTCCTTGGGAGCTGGATTTGCTCTTCAGGTTTGCAAAGAGCTCGCTAAGCAAGGAGTCTTCGTGGAGTGTCATCTGTTCAATCCACCTTCTGTTTCACTTGCCATGGGTGTAAGGAGTATGAGTGAGAAGGCCAGCTACCTGTGGAAAAAAGTTAAGGCTAGTCTACCACTGACTGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAGAAGAAATTGCGTGCTGACAAGAAATGGGTGCCACATTTATATGTAAACAACAGTGACTACATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGATGGTGCTTCAGATGAGCAGCAGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTCGCGAAGCTTTTTGTGACATCGAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAGCAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATACAGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAACTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTCTATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAAC--TATTATACAGTAAAATATAATAAACGGACATGTGCTGATAAATACATTGATATTTTTCATGTTCCATCTTCTGTCAGAGGTTTTCAAGACTCTAAATTGTTACAAGGGATATAAGGGATACTAGTATGTCTGGATACCGATTAGCATCCATGTTTATGATTATGATCTTTTGATGGTGCAAAAAAAAAAAAAAA] [+] EMBL AK108569 [CGCGTTCGCGTGCTGCCAAATCCTCCTCCCCCTCCTCCGTCCCCACAACATTCTGTCGCGCCGATTCGACCGTTGCCGCCTCGCCCGCTCCGCGCACGCGCGCACGCCGCTCCCGTTCCCCTCGCGCACGCGCGGGCCATGGCGATCGACCTGGCGCCGCTGGCTGGGGAGTTGGAGGTCGCGGGGGCGGCGGTTGGAGGGAAGAAAGAGGAGGGGGAGGGGGAGGAGGGCGGGGTGTGCGGCGGGGAGGCCGTGGTGGTGGCCGCGGCGGACGCGGAGGTGGAGGGCCACCCCTACGACTTCCACGTGTCCGGGCCGCGGAACCTGCCGCCGCCCAACTGGAGGGAGATCATCCGTTCGAGCTGGAAGGATCCCAATTACAAAAGGATGGTAATGGCCTGCTTCATTCAAGCAGTCTACCTGCTTGAACTGGACAGGCAAGATGAGAAAGGAGAAGAGGATGGCCTTGCTCCAAAATGGTGGAAGCCCTTCAAATACAAGGTCACACAGACATTGGTCGATGAGAGAGATGGTTCCATCTATGGTGCCGTCCTTGAGTGGGATCGTTCTTCTGCTTTGTCTGACCTTATCCTCATAAGACCAAGTGGCGCGCCAAGGGCTGTGTTAGCTCTCCGAGGAACACTGCTTCAGAAGCCCACCATCAAGAGAGACCTACAAGATGATCTTCGCTTCCTGGTGTGGGAGAGCTTAAAAGGATCAGTCAGATATATTGGCGCTTTAGAAGCACTGAAGACAGCAGTTGAGAGGTTTGGTAGCGCTAATGTCAGTGTTGCTGGGCACTCCTTGGGAGCTGGATTTGCTCTTCAGGTTTGCAAAGAGCTCGCTAAGCAAGGAGTCTTCGTGGAGTGTCATCTGTTCAATCCACCTTCTGTTTCACTTGCCATGGGTGTAAGGAGTATGAGTGAGAAGGCCAGCTACCTGTGGAAAAAAGTTAAGGCTAGTCTACCACTGACTGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAGAAGAAATTGCGTGCTGACAAGAAATGGGTGCCACATTTATATGTAAACAACAGTGACTACATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGATGGTGCTTCAGATGAGCAGCAGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTCGCGAAGCTTTTTGTGACATCGAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAGCAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATACAGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAACTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTCTATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAAC TATTATACAGTAAAATATAATAAACGGACATGTGCTGATAAATACATTGATATT ] [-] EMBL CA760242 [ TTTAGATGAGCAGCGGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTCGCGAAGCTTTTTGTGACATCAAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAGCAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATACAGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAACTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTCTATTAACCTGATATGTTTCATCATGGTTGTGACTGTGAACTATATTATACAGTAAAATATAATAAACGGACATGTGCTGATAAATACATTGATATTTTTCATGTTCCATCTTCTGTCAGAGGTTTTCAAGACTCTAAATTGTTACAAGGGATATAAGGGATACTAGTATGTCTGGATACCGATTAGCATCCATGTTTATGATTATGATCTTTTGATGGTGCAAAAAAAAAAAAAAA] consensusID : consensus_5124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [GGACGAGACAAGGGGGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAGAAGAAATTGCGTGCTGACAAGAGATGGGTGCCACATTTATATGTAAACAACAGTGACTACATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGATGGTGCTTCAGATGAGCAGCGGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTCGCGAAGCTTTTTGTGACATCAAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAGCAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATACAGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAACTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTCTATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAACTATATTATACAGTAAAATATAATAAACGGACATGTGCTGATAAATACATTGA] [+] EMBL CA767265 [GGACGAGACAAGGGGGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAGAAGAAATTGCGTGCTGACAAGAGATGGGTGCCACATTTATATGTAAACAACAGTGACTACATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGATGGTGCTTCAGATGAGCAGCGGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTCGCGAAGCTTTTTGTGACATCAAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAGCAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATACAGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAACTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTCTATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAACTATATTATACAGTAAAATATAATAAACGGACATGTGCTGATAAATACATTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5124#0 CGCGTTCGCGTGCTGCCAAATCCTCCTCCCCCTCCTCCGTCCCCACAACATTCTGTCGCG 60 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 CCGATTCGACCGTTGCCGCCTCGCCCGCTCCGCGCACGCGCGCACGCCGCTCCCGTTCCC 120 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 CTCGCGCACGCGCGGGCCATGGCGATCGACCTGGCGCCGCTGGCTGGGGAGTTGGAGGTC 180 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 GCGGGGGCGGCGGTTGGAGGGAAGAAAGAGGAGGGGGAGGGGGAGGAGGGCGGGGTGTGC 240 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 GGCGGGGAGGCCGTGGTGGTGGCCGCGGCGGACGCGGAGGTGGAGGGCCACCCCTACGAC 300 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 TTCCACGTGTCCGGGCCGCGGAACCTGCCGCCGCCCAACTGGAGGGAGATCATCCGTTCG 360 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 AGCTGGAAGGATCCCAATTACAAAAGGATGGTAATGGCCTGCTTCATTCAAGCAGTCTAC 420 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 CTGCTTGAACTGGACAGGCAAGATGAGAAAGGAGAAGAGGATGGCCTTGCTCCAAAATGG 480 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 TGGAAGCCCTTCAAATACAAGGTCACACAGACATTGGTCGATGAGAGAGATGGTTCCATC 540 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 TATGGTGCCGTCCTTGAGTGGGATCGTTCTTCTGCTTTGTCTGACCTTATCCTCATAAGA 600 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 CCAAGTGGCGCGCCAAGGGCTGTGTTAGCTCTCCGAGGAACACTGCTTCAGAAGCCCACC 660 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 ATCAAGAGAGACCTACAAGATGATCTTCGCTTCCTGGTGTGGGAGAGCTTAAAAGGATCA 720 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 GTCAGATATATTGGCGCTTTAGAAGCACTGAAGACAGCAGTTGAGAGGTTTGGTAGCGCT 780 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 AATGTCAGTGTTGCTGGGCACTCCTTGGGAGCTGGATTTGCTCTTCAGGTTTGCAAAGAG 840 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 CTCGCTAAGCAAGGAGTCTTCGTGGAGTGTCATCTGTTCAATCCACCTTCTGTTTCACTT 900 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 GCCATGGGTGTAAGGAGTATGAGTGAGAAGGCCAGCTACCTGTGGAAAAAAGTTAAGGCT 960 consensus_5124#1 -------------------------------------------------------GGACG 5 * * consensus_5124#0 AGTCTACCACTGACTGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAG 1020 consensus_5124#1 AGACAA-----GGGGGAAGAAGCATTACCTGACAGTACCAAAGAGGAGGGAAGTGCAAAG 60 ** * * * ********************************************* consensus_5124#0 AAGAAATTGCGTGCTGACAAGAAATGGGTGCCACATTTATATGTAAACAACAGTGACTAC 1080 consensus_5124#1 AAGAAATTGCGTGCTGACAAGAGATGGGTGCCACATTTATATGTAAACAACAGTGACTAC 120 ********************** ************************************* consensus_5124#0 ATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGAT 1140 consensus_5124#1 ATCTGCTGTCACTACAATGCCCCTAATTGCTCCACCACCACCACCACTACCACCACTGAT 180 ************************************************************ consensus_5124#0 GGTGCTTCAGATGAGCAGCAGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTC 1200 consensus_5124#1 GGTGCTTCAGATGAGCAGCGGCAGCAACGAAAGGCAAGTGAGATCGCTGGTGATGTGGTC 240 ******************* **************************************** consensus_5124#0 GCGAAGCTTTTTGTGACATCGAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAG 1260 consensus_5124#1 GCGAAGCTTTTTGTGACATCAAAAGGCCCACAGAAGTTTCTTGAAGCGCATGGGCTGGAG 300 ******************** *************************************** consensus_5124#0 CAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATAC 1320 consensus_5124#1 CAATGGTGGTCGGATGGCATGGAGCTGCAGCTAGCAGTGTATGACAGCAAGCTTATATAC 360 ************************************************************ consensus_5124#0 AGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAA 1380 consensus_5124#1 AGGCAGTTGAAGTCCCTCTACACAGCAACTGCACCGTCACCCCCTGCAAAGTAGTAGAAA 420 ************************************************************ consensus_5124#0 CTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTC 1440 consensus_5124#1 CTGCTGAGATCGCTGTTTCAACTGGCGTTAGAAATACTCTTTCTAATCAGTTTCTGCCTC 480 ************************************************************ consensus_5124#0 TATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAACTAT--TATACAGTAAAATAT 1498 consensus_5124#1 TATTAACTTGATATGTTTCATCATGGTTGTGACTGTGAACTATATTATACAGTAAAATAT 540 ******************************************* *************** consensus_5124#0 AATAAACGGACATGTGCTGATAAATACATTGATATTTTTCATGTTCCATCTTCTGTCAGA 1558 consensus_5124#1 AATAAACGGACATGTGCTGATAAATACATTGA---------------------------- 572 ******************************** consensus_5124#0 GGTTTTCAAGACTCTAAATTGTTACAAGGGATATAAGGGATACTAGTATGTCTGGATACC 1618 consensus_5124#1 ------------------------------------------------------------ consensus_5124#0 GATTAGCATCCATGTTTATGATTATGATCTTTTGATGGTGCAAAAAAAAAAAAAAA 1674 consensus_5124#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||