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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5143 cluster # 5143       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5143#0 length = 862 sequences # 3  

consensusID : consensus_5143#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 862
fasta sequence
                              [TTTTTTTTTTTTTTTGCCATCAGCGCTCATGATCGTTTGCATTGCAAGGATGTTTAAATAGTATTGAATCCAATAATTCATCAAATGACTGTCACCTTGACAATATAGTTTTCATAAATTTCAAACAAATATTTGAATTAATGTACCTAAGGACCCAGTGTTTGTAACTTTTGGGGCTATGGACAGAAATACAATATCACCATCCATGAGCGGGTAAAA-ATGGGTCGGTTTCCCTCAATGCCTCATATGGCCCTTCAATCAATGTCACAAAAGATTATCACTTCTGGCGTGCATACAGTACAGCAATAACGACTGATATCCCGACTACTGTCGCTGGAATGGGCCAGTACTGTGCTGCATTGGCCATCAGCTTGCTTGCGAAGTTCACATCCTGCTCCTTCCTGAAAACCTCCATCTCAGGGATGTNNTGGGTGTTGGATCCAACTCCCCAATGAAATAATCTTGCATTAGCTCCTTGGCACTCTCGCTGTGCCCCGCATCATCAAATTCCTCCTTGGCATCCTTACCGGTCACTTCGAGCAGAACATCAGCACCCCCAGGATTGGTCGTCCAGATACTTTGGTGACATCATAAATCTTGCCGTCGACGAACCCCANCAGTCTNNGNNGGGTGTTTTTGTGCCTTCCCCCGTCCTTCCAAGCTGTACAGNTTTCGTCAGCGGTGGGGATCTTCCTCCTCCCTCTACCTCTGCTTCGCTGCTTCAATGNGGGGGGGGGGGGGGGCCCCGGGCCCCAATTCCCCTTATAGGAATCCTATTAAACGCGCTCCTTGCCGGGGGTTTTAAACGAGGGGAACTGGGAAAACCCTGGGGTTCCCCCAATAAAACCTTTGAAGAATTACC]

[+] EMBL CA758931             [TTTTTTTTTTTTTTTGCCATCAGCGCTCATGATCGTTTGCATTGCAAGGATGTTTAAATAGTATTGAATCCAATAATTCATCAAATGACTGTCACCTTGACAATATAGTTTTCATAAATTTCAAACAAATATTTGAATTAATGTACCTAAGGACCCAGTGTTTGTAACTTTTGGGGCTATGGACAGAAATACAATATCACCATCCATGAGCGGGTAAAA ATGGGTCGGTTTCCCTCAATGCCTCATATGGCCCTTCAATCAATGTCACAAAAGATTATCACTTCTGGCGTGCATACAGTACAGCAATAACGACTGATATCCCGACTACTGTCGCTGGAATGGGCCAGTACTGTGCTGCATTGGCCATCAGCTTGCTTGCGAAGTTCACATCCTGCTCCTTCCTGAAAACCTCCATCTCAGGGATGTNNTGGGTGTTGGATCCAACTCCCCAATGAAATAATCTTGCATTAGCTCCTTGGCACTCTCGCTGTGCCCCGCATCATCAAATTCCTCCTTGGCATCCTTACCGGTCACTTCGAGCAGAACATCAGCACCCCCAGGATTGGTCGTCCAGATACTTTGGTGACATCATAAATCTTGCCGTCGACGAACCCCANCAGTCTNNGNNGGGTGTTTTTGTGCCTTCCCCCGTCCTTCCAAGCTGTACAGNTTTCGTCAGCGGTGGGGATCTTCCTCCTCCCTCTACCTCTGCTTCGCTGCTTCAATGNGGGGGGGGGGGGGGGCCCCGGGCCCCAATTCCCCTTATAGGAATCCTATTAAACGCGCTCCTTGCCGGGGGTTTTAAACGAGGGGAACTGGGAAAACCCTGGGGTTCCCCCAATAAAACCTTTGAAGAATTACC]
[+] EMBL CF337329             [                                                  ttTTTAAATAGTATTGAATCCAATAATTCATCAAATGACTGTCACCTTGACAATATAGTTTTCATAAATTTCAAACAAATATTTGAATTAATGTACCTAAGGACCCAGTGTTTGTAACTTTTGGGGCTATGGACAGAAATACAATATCACCATCCATGAGCGGGTAAAANATGGGTCGGTTTCCCTCAATGCCTCATATGGCCCTTCAATCAATGTCACAAAAGATTATCACTTCTGGCGTGCATACAGTACAGCAATAACGACTGATATCCCGACTACTGTCGCTGGAATGGGCCAGTACTGTGCTGCATTGGCCATCAGCTTGCTTGCGAAGTTCACATCCTGCTCCTTCCTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AK058444             [                                                     TTAAATAGTATTGAATCCAATAATTCATCAAATGACTGTCACCTTGACAATATAGTTTTCATAAATTTCAAACAAATATTTGAATTAATGTACCTAAGGACCCAGTGTTTGTAACTTTTGGGGCTATGGACAGAAATACAATATCACCATCCATGAGCGGGTAAAA ATGGGTCGGTTTCCCTCAATGCCTCATATGGCCCTTCAATCAATGTCACAAAAGATTATCACTTCTGGCGTGCATACAGTACAGCAATAACGACTGATATCCCGACTACTGTCGCTGGAATGGGCCAGTACTGTGCTGCATTGGCCATCAGCTTGCTTGCGAAGTTCACATCCTGCTCCTTCCTGAAAACCTCCATCTCAGGGATGT  TGGGTGTTGGATCCAACTCCCCAATGAAATAATCTTGCATTAGCTCCTTGGCACTCTCGCTGTGCCCCGCATCATCAAA                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_5143#0 TTTTTTTTTTTTTTTGCCATCAGCGCTCATGATCGTTTGCATTGCAAGGATGTTTAAATA GTATTGAATCCAATAATTCATCAAATGACTGTCACCTTGACAATATAGTTTTCATAAATT TCAAACAAATATTTGAATTAATGTACCTAAGGACCCAGTGTTTGTAACTTTTGGGGCTAT GGACAGAAATACAATATCACCATCCATGAGCGGGTAAAAATGGGTCGGTTTCCCTCAATG CCTCATATGGCCCTTCAATCAATGTCACAAAAGATTATCACTTCTGGCGTGCATACAGTA CAGCAATAACGACTGATATCCCGACTACTGTCGCTGGAATGGGCCAGTACTGTGCTGCAT TGGCCATCAGCTTGCTTGCGAAGTTCACATCCTGCTCCTTCCTGAAAACCTCCATCTCAG GGATGTNNTGGGTGTTGGATCCAACTCCCCAATGAAATAATCTTGCATTAGCTCCTTGGC ACTCTCGCTGTGCCCCGCATCATCAAATTCCTCCTTGGCATCCTTACCGGTCACTTCGAG CAGAACATCAGCACCCCCAGGATTGGTCGTCCAGATACTTTGGTGACATCATAAATCTTG CCGTCGACGAACCCCANCAGTCTNNGNNGGGTGTTTTTGTGCCTTCCCCCGTCCTTCCAA GCTGTACAGNTTTCGTCAGCGGTGGGGATCTTCCTCCTCCCTCTACCTCTGCTTCGCTGC TTCAATGNGGGGGGGGGGGGGGGCCCCGGGCCCCAATTCCCCTTATAGGAATCCTATTAA ACGCGCTCCTTGCCGGGGGTTTTAAACGAGGGGAACTGGGAAAACCCTGGGGTTCCCCCA ATAAAACCTTTGAAGAATTACC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)