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Oryza sativa
cluster # 5145 cluster # 5145       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5145#0 length = 1160 sequences # 3  

consensusID : consensus_5145#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1160
fasta sequence
                              [CTCTGGATCTTCTTCTCCGTCTCCTCCCCGGTCTCGTGTGAGCGCTACTCCCGGCCCACAGGTTCTTCATGGCGTCGCCGGCGGCGGGGACGCCGCCGTTCTTGACGAAGACGTACGCGATGGTGGAGGACCCGAGCACCGATGAGACCATCTCGTGGAACGACTCCGGCACGGCCTTCGTGGTGTGGCGCCCCGCCGAGTTCGCCCGCGACCTCCTCCCCAAGCACTTCAAGCACAGCAACTTCTCCTCCTTCGTGCGCCAGCTCAACACCTACGGATTCAAGAAGGTGGTGGCGGATAGGTGGGAGTTCGCCAACGACTGCTTCAGGAGAGGGGAGAAGCACCTGCTCGGTGGGATACAGAGGCGGAAGGGGTCTGGGACCGGAGGCGCGGGGGCGGCGCCGGCGGGGGGCATACCGACGGCGATACCGATCTCGTCCCCGCCGACGAGCTCCGGCGGGGAGCCCGCGGTGTCGTCGTCGCCGCCGCGCGGGGCGGCGGGGATCGCGGCGGGGGTGAGCGGCGCGGTGGCCGAGCTGGAGGAGGAGAACGCCCGGCTGCGGCGAGAGAACGCGAGGCTGGCGCGGGAGCTGGCACGCGCGCGGCGGGTCTGCGACGGCGTGCGGCGCCTCGTGTCGCGGTACGACCACGACCACGGCGGCGGGGAGGAGGAAGCGGGGGAGGGCGACGTGAAGCCGATGCTGTTCGGCGTGGCGATCGGCGGCAAAAGATCGCGCGAGGAGAACGGGGAAGACGAGGAGGAGGAGGAGGAGGAAGGGGCTGACGAGGACGGCGAAGACGATGAGGTGGAGGAAGACGACGAGGAGAGAGAGAGGCACGCGGCGCGGCGGGTCCCCGTGAGGGAGGGGAAGGTCAGGAGGACGACGGAGCTGTCGGATCTGGACGTGCTCGCGCTGTCCGTGCGGGCGGCGGCCGCGGCGAGGCCGGGCGGGGCCTCCCGTGACCGCAAGAGCTCGGTCTCGTAACGGTTGTTGACTTGCTGTTGATTTTATATGCGGCGTAAAACTGAGAAAATTGGATGGCACATGAGCCAAATTGAATTGTAGTTCGTACCAGTACCAAGCAAACTGCAGCCACTTTACAGGGTACTAAACTATACTTTCGGGAGTAGTAGGAACATTGTAGCCTTGGTTGTCATG]

[+] EMBL AU108176             [CTCTGGATCTTCTTCTCCGTCTCCTCCCCGGTCTCGTGTGAGCGCTACTCCCGGCCCACAGGTTCTTCATGGCGTCGCCGGCGGCGGGGACGCCGCCGTTCTTGACGAAGACGTACGCGATGGTGGAGGACCCGAGCACCGATGAGACCATCTCGTGGAACGACTCCGGCACGGCCTTCGTGGTGTGGCGCCCCGCCGAGTTCGCCCGCGACCTCCTCCCCAAGCACTTCAAGCACAGCAACTTCTCCTCCTTCGTGCGCCAGCTCAACACCTACGGATTCAAGAAGGTGGTGGCGGATAGGTGGGAGTTCGCCAACGACTGCTTCAGGAGAGGGGAGAAGCACCTGCTCGGTGGGATACAGAGGCGGAAGGGGTCTGGGACCGGAGGCGCGGGGGCGGCGCCGGCGGGGGGCATACCGACGGCGATACCGATCTCGTCCCCGCCGACGAGCTCCGGCGGGGAGCCCGCGGTGTCGTCGTCGCCGCCGCGCGGGGCGGCGGGGATCGCGGCGGGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AY344483             [       TCTTCTTCTCCGTCTCCTCCCCGGTCTCGTGTGAGCGCTACTCCCGGCCCACAGGTTCTTCATGGCGTCGCCGGCGGCGGGGACGCCGCCGTTCTTGACGAAGACGTACGCGATGGTGGAGGACCCGAGCACCGATGAGACCATCTCGTGGAACGACTCCGGCACGGCCTTCGTGGTGTGGCGCCCCGCCGAGTTCGCCCGCGACCTCCTCCCCAAGCACTTCAAGCACAGCAACTTCTCCTCCTTCGTGCGCCAGCTCAACACCTACGGATTCAAGAAGGTGGTGGCGGATAGGTGGGAGTTCGCCAACGACTGCTTCAGGAGAGGGGAGAAGCACCTGCTCGGTGGGATACAGAGGCGGAAGGGGTCTGGGACCGGAGGCGCGGGGGCGGCGCCGGCGGGGGGCATACCGACGGCGATACCGATCTCGTCCCCGCCGACGAGCTCCGGCGGGGAGCCCGCGGTGTCGTCGTCGCCGCCGCGCGGGGCGGCGGGGATCGCGGCGGGGGTGAGCGGCGCGGTGGCCGAGCTGGAGGAGGAGAACGCCCGGCTGCGGCGAGAGAACGCGAGGCTGGCGCGGGAGCTGGCACGCGCGCGGCGGGTCTGCGACGGCGTGCGGCGCCTCGTGTCGCGGTACGACCACGACCACGGCGGCGGGGAGGAGGAAGCGGGGGAGGGCGACGTGAAGCCGATGCTGTTCGGCGTGGCGATCGGCGGCAAAAGATCGCGCGAGGAGAACGGGGAAGACGAGGAGGAGGAGGAGGAGGAAGGGGCTGACGAGGACGGCGAAGACGATGAGGTGGAGGAAGACGACGAGGAGAGAGAGAGGCACGCGGCGCGGCGGGTCCCCGTGAGGGAGGGGAAGGTCAGGAGGACGACGGAGCTGTCGGATCTGGACGTGCTCGCGCTGTCCGTGCGGGCGGCGGCCGCGGCGAGGCCGGGCGGGGCCTCCCGTGACCGCAAGAGCTCGGTCTCGTAACGGTTGTTGACTTGCTGTTGATTTTATATGCGGCGTAAAACTGAGAAAATTGGATGGCACATGAGCCAAATTGAATTGTAGTTCGTACCAGTACCAAGCAAACTGCAGCCACTTTACAGGGTACTAAACTATACTTTCGGGAGTAGTAGGAACATTGTAGCCTTGGTTGTCATG]
[+] EMBL AU108177             [                                                                                                                                                                                                                                                 CTTCT  TCNTTCGTGCGCCAGCTCAACACNTACGGATTC ANAAGNT GT GCGGATAGGTGGAAGTTCGCCAACGACTGCTTCAGGAGAGGGGAGAAGCACCTGCTCGGTGGGATACAGA GCGGAAGGGGTCTGGGACCGAAGGCGCGGGGCCGGCGCCGGCGGGGGGCATACCGACGGCGATACCGATCTCGTCCCCGCCGACGAGCTCCGGCGGGGAGCCCGCGGTGTCGTCGTCGCCGCCGCGCGGGGCGGCGGGGATCGCGGCGGGGGTGAGCGGCGCGGTGGCCGAGCTGGAGGAGGAGAACGCCCGGCTGCGGCGAGAGAACGCGAGGCTGGCGCGGGAGCTGGCACGCGCGCGGCGGGTCTGCGACGGCGTGCGGCGCCTCGTGTCGCGGTACGACCACGACCACGGCGGCGGGGAGGAGGAAGCGGGGGAGGGCGACGTGAAGCCGATGCTGTTCGGCGTGGCGATCGGCGGCAAAAGATCGCGCGAGGAGAACGGGGAAGACGAGGAGGAGGAGGAGGAGGAAGGGGCTGACGAGGACGGCGAAGACGATGAGGTGGAGGAAGACGACGAGGAGAGAGAGAGGCACGCGGCGCGGCGGGTCCCCGTGAGGGAGGGGAAGGTCAGGAGGACGACGGAGCTGTCGGATCTGGACGTGCTCGCGCTGTC                                                                                                                                                                                                                                                 ]


>consensus_5145#0 CTCTGGATCTTCTTCTCCGTCTCCTCCCCGGTCTCGTGTGAGCGCTACTCCCGGCCCACA GGTTCTTCATGGCGTCGCCGGCGGCGGGGACGCCGCCGTTCTTGACGAAGACGTACGCGA TGGTGGAGGACCCGAGCACCGATGAGACCATCTCGTGGAACGACTCCGGCACGGCCTTCG TGGTGTGGCGCCCCGCCGAGTTCGCCCGCGACCTCCTCCCCAAGCACTTCAAGCACAGCA ACTTCTCCTCCTTCGTGCGCCAGCTCAACACCTACGGATTCAAGAAGGTGGTGGCGGATA GGTGGGAGTTCGCCAACGACTGCTTCAGGAGAGGGGAGAAGCACCTGCTCGGTGGGATAC AGAGGCGGAAGGGGTCTGGGACCGGAGGCGCGGGGGCGGCGCCGGCGGGGGGCATACCGA CGGCGATACCGATCTCGTCCCCGCCGACGAGCTCCGGCGGGGAGCCCGCGGTGTCGTCGT CGCCGCCGCGCGGGGCGGCGGGGATCGCGGCGGGGGTGAGCGGCGCGGTGGCCGAGCTGG AGGAGGAGAACGCCCGGCTGCGGCGAGAGAACGCGAGGCTGGCGCGGGAGCTGGCACGCG CGCGGCGGGTCTGCGACGGCGTGCGGCGCCTCGTGTCGCGGTACGACCACGACCACGGCG GCGGGGAGGAGGAAGCGGGGGAGGGCGACGTGAAGCCGATGCTGTTCGGCGTGGCGATCG GCGGCAAAAGATCGCGCGAGGAGAACGGGGAAGACGAGGAGGAGGAGGAGGAGGAAGGGG CTGACGAGGACGGCGAAGACGATGAGGTGGAGGAAGACGACGAGGAGAGAGAGAGGCACG CGGCGCGGCGGGTCCCCGTGAGGGAGGGGAAGGTCAGGAGGACGACGGAGCTGTCGGATC TGGACGTGCTCGCGCTGTCCGTGCGGGCGGCGGCCGCGGCGAGGCCGGGCGGGGCCTCCC GTGACCGCAAGAGCTCGGTCTCGTAACGGTTGTTGACTTGCTGTTGATTTTATATGCGGC GTAAAACTGAGAAAATTGGATGGCACATGAGCCAAATTGAATTGTAGTTCGTACCAGTAC CAAGCAAACTGCAGCCACTTTACAGGGTACTAAACTATACTTTCGGGAGTAGTAGGAACA TTGTAGCCTTGGTTGTCATG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)