These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5147#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1992 fasta sequence [CATTTTCCTATGTTCCATCGATGTGTGTTGTCATCAATATTTTGTACCGCACGTCGTATGGGCAGTGAGTGCCGCGCCTCGTCTAGAACAAAATCGTCGGGTTTCGGCAGTGGATTGGGGAAATGGAGCGGTGGACGGGGTGCTCACGATGGCTGCGGTGGCGGGAAAAGCGACGGCGCAGTGCGGGGTGGACGGGAGCGACGATGGTGCACGGCTGAATGCGATGGGAGGCGGTGGAGAGAGGGAGCACGGTGGAGAGGTGCTTTAGGTGGTATTTTGGGGAAACGGAGGAGATGCCGAGGTAGAGCTTGGCACGGCGTTGCCGACGGCGCAAGTGGCGTGGCGCGACGGTGACTAGGGCGGCGGCGAGGTGCGGCTAGAGAGCTCCGGCGGGCGGCTGCGCATGGCTCGGCGTGGGGAGAGCGATAGGGGGCGCGGCGAGCCCGGGGATTTGGGGAAAATGGGAGAGGGGGCCCCGGGGATGCTTTTTATAGGTCCGGGAGGTGGAAATCGGGACCGAGAAAGGCGGGAACCGACCGGCGATGTGGGGCGCCGACGTGGGAAGGTTGGCGGCGGTTCGGCGCTGATTTTGCGGGGAGGAGTGGGGGAATTGGGGGAGGAGGAGGTGGGGATCGAGTCCACGTGCTCGCGAGGTGAGGTGGAGCGCGGGAAGCGCGGCATCGTGGGGCGAAACCGGCAGCCATGGCGGTTGCAGCCGGCCGGATGGAGGTAAGGGGAGAAGCTGACGAGTGGGCCCGCGGTCCCACTTGTCGGCGAGAGAAGGGGGAGGAGGCCGATGGAGGGATGCAAAGAGGACTTGCGGGAGAGGGAGGGGGAGGAGCTGGGCCGGCCCAAAAGAAGGGAGAACTTGGGCCGAAAGGAGGCCCGAAAGGAAAGAGGGGGATTTTAATTGTTTTTCTTTTTATTTAATTGGTTAAATGAACTTTGTGCTATTAAAATTATTTCTTAGAAAATTTACAGAAAAATCCGGAGAGTATATTTAGGCACAGAGAATATTTCAAAATATTTCCGGCCAATGATTTTTAAAGAAAATTTTAATTTCCTTTATAATTTCCCTTGATTAAATTACTTTAAATTTTAATATAATTCCTAGAAAATGCATTACTAATTGATTTTTAATCCCCAACGAAAATCGGGGCGTTACACTCAACCTCCTGCTGCAGGATCAGAAGGTTTTAACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGGCCGCTGCCGATGGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCTTGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGCTCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACAACACCGCCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGCAGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCTGTACATGCCACAACACGTTCTCTTCAAAAGGAAGAATGTCATCACAAACAACAATGTGGGCATGATCTACTGTCAATATCATTTTCATGGGAACACATTGGGCAAGGACTTGGTCTTTGCTTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATGTGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTTTTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGAGGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGATTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAAAAATGCAAGCTCATG] [+] EMBL AK105301 [CATTTTCCTATGTTCCATCGATGTGTGTTGTCATCAATATTTTGTACCGCACGTCGTATGGGCAGTGAGTGCCGCGCCTCGTCTAGAACAAAATCGTCGGGTTTCGGCAGTGGATTGGGGAAATGGAGCGGTGGACGGGGTGCTCACGATGGCTGCGGTGGCGGGAAAAGCGACGGCGCAGTGCGGGGTGGACGGGAGCGACGATGGTGCACGGCTGAATGCGATGGGAGGCGGTGGAGAGAGGGAGCACGGTGGAGAGGTGCTTTAGGTGGTATTTTGGGGAAACGGAGGAGATGCCGAGGTAGAGCTTGGCACGGCGTTGCCGACGGCGCAAGTGGCGTGGCGCGACGGTGACTAGGGCGGCGGCGAGGTGCGGCTAGAGAGCTCCGGCGGGCGGCTGCGCATGGCTCGGCGTGGGGAGAGCGATAGGGGGCGCGGCGAGCCCGGGGATTTGGGGAAAATGGGAGAGGGGGCCCCGGGGATGCTTTTTATAGGTCCGGGAGGTGGAAATCGGGACCGAGAAAGGCGGGAACCGACCGGCGATGTGGGGCGCCGACGTGGGAAGGTTGGCGGCGGTTCGGCGCTGATTTTGCGGGGAGGAGTGGGGGAATTGGGGGAGGAGGAGGTGGGGATCGAGTCCACGTGCTCGCGAGGTGAGGTGGAGCGCGGGAAGCGCGGCATCGTGGGGCGAAACCGGCAGCCATGGCGGTTGCAGCCGGCCGGATGGAGGTAAGGGGAGAAGCTGACGAGTGGGCCCGCGGTCCCACTTGTCGGCGAGAGAAGGGGGAGGAGGCCGATGGAGGGATGCAAAGAGGACTTGCGGGAGAGGGAGGGGGAGGAGCTGGGCCGGCCCAAAAGAAGGGAGAACTTGGGCCGAAAGGAGGCCCGAAAGGAAAGAGGGGGATTTTAATTGTTTTTCTTTTTATTTAATTGGTTAAATGAACTTTGTGCTATTAAAATTATTTCTTAGAAAATTTACAGAAAAATCCGGAGAGTATATTTAGGCACAGAGAATATTTCAAAATATTTCCGGCCAATGATTTTTAAAGAAAATTTTAATTTCCTTTATAATTTCCCTTGATTAAATTACTTTAAATTTTAATATAATTCCTAGAAAATGCATTACTAATTGATTTTTAATCCCCAACGAAAATCGGGGCGTTACACTCAACCTCCTGCTGCAGGATCAGAAGGTTTTAACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGGCCGCTGCCGATGGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCTTGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGCTCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACAACACCGCCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGCAGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCTGTACATGCCACAACACGTTCTCTTCAAAAGGAAGAATGTCATCACAAACAACAATGTGGGCATGATCTACTGTCAATATCATTTTCATGGGAACACATTGGGCAAGGACTTGGTCTTTGCTTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATGTGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTTTTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGAGGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGATTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAAAAATGCAAGCTCATG] consensusID : consensus_5147#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 803 fasta sequence [AAGTGATCGCGTGTGTGAGGGTTTTGCCACAACAAGGATCAGAAGGTTTTAACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGGCCGCTGCCGATTGGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCTTGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGCTCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACAACACCGNCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGCAGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCTGTACATGCCAC-ACACG-TCAATTTCATGGGACAATATTGGGCAAGGACTTGGTCTTTGCTTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATGTGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTTTTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGAGGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGATTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAAAAATGCAAGCTCATGTGGTTAATTCATTCTAAAAA] [+] EMBL C73406 [AAGTGATCGCGTGTGTGAGGGTTTTGCCACAACAAGGATCAGAAGGTTTTAACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGGCCGCTGCCGATTGGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCTTGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGCTCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACAACACCGNCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGCAGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCTGTACATGCCAC ACACG TCAATTTCATGGGACAAT ] [+] EMBL AU172676 [ GTGTGAAGGCTAGGGATCATGGTCACTTCTGTACATGCCACAACACGATCATTTTCATGGGAACACATTGGGCAAGGACTTGGTCTTTGCTTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATGTGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTTTTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGAGGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGATTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAAAAATGCAAGCTCATGTGGTTAATTCATTCTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5147#0 CATTTTCCTATGTTCCATCGATGTGTGTTGTCATCAATATTTTGTACCGCACGTCGTATG 60 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 GGCAGTGAGTGCCGCGCCTCGTCTAGAACAAAATCGTCGGGTTTCGGCAGTGGATTGGGG 120 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 AAATGGAGCGGTGGACGGGGTGCTCACGATGGCTGCGGTGGCGGGAAAAGCGACGGCGCA 180 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 GTGCGGGGTGGACGGGAGCGACGATGGTGCACGGCTGAATGCGATGGGAGGCGGTGGAGA 240 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 GAGGGAGCACGGTGGAGAGGTGCTTTAGGTGGTATTTTGGGGAAACGGAGGAGATGCCGA 300 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 GGTAGAGCTTGGCACGGCGTTGCCGACGGCGCAAGTGGCGTGGCGCGACGGTGACTAGGG 360 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 CGGCGGCGAGGTGCGGCTAGAGAGCTCCGGCGGGCGGCTGCGCATGGCTCGGCGTGGGGA 420 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 GAGCGATAGGGGGCGCGGCGAGCCCGGGGATTTGGGGAAAATGGGAGAGGGGGCCCCGGG 480 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 GATGCTTTTTATAGGTCCGGGAGGTGGAAATCGGGACCGAGAAAGGCGGGAACCGACCGG 540 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 CGATGTGGGGCGCCGACGTGGGAAGGTTGGCGGCGGTTCGGCGCTGATTTTGCGGGGAGG 600 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 AGTGGGGGAATTGGGGGAGGAGGAGGTGGGGATCGAGTCCACGTGCTCGCGAGGTGAGGT 660 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 GGAGCGCGGGAAGCGCGGCATCGTGGGGCGAAACCGGCAGCCATGGCGGTTGCAGCCGGC 720 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 CGGATGGAGGTAAGGGGAGAAGCTGACGAGTGGGCCCGCGGTCCCACTTGTCGGCGAGAG 780 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 AAGGGGGAGGAGGCCGATGGAGGGATGCAAAGAGGACTTGCGGGAGAGGGAGGGGGAGGA 840 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 GCTGGGCCGGCCCAAAAGAAGGGAGAACTTGGGCCGAAAGGAGGCCCGAAAGGAAAGAGG 900 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 GGGATTTTAATTGTTTTTCTTTTTATTTAATTGGTTAAATGAACTTTGTGCTATTAAAAT 960 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 TATTTCTTAGAAAATTTACAGAAAAATCCGGAGAGTATATTTAGGCACAGAGAATATTTC 1020 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 AAAATATTTCCGGCCAATGATTTTTAAAGAAAATTTTAATTTCCTTTATAATTTCCCTTG 1080 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 ATTAAATTACTTTAAATTTTAATATAATTCCTAGAAAATGCATTACTAATTGATTTTTAA 1140 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 TCCCCAACGAAAATCGGGGCGT-TACACTCAACCTCCTGCTGCA-GGATCAGAAGGTTTT 1198 consensus_5147#1 ----------AAGTGATCGCGTGTGTGAGGGTTTTGCCACAACAAGGATCAGAAGGTTTT 50 ** * **** * * * * ** *************** consensus_5147#0 AACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGG 1258 consensus_5147#1 AACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGG 110 ************************************************************ consensus_5147#0 CCGCTGCCGAT-GGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCT 1317 consensus_5147#1 CCGCTGCCGATTGGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCT 170 *********** ************************************************ consensus_5147#0 TGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGC 1377 consensus_5147#1 TGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGC 230 ************************************************************ consensus_5147#0 TCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACA 1437 consensus_5147#1 TCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACA 290 ************************************************************ consensus_5147#0 ACACCGCCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGC 1497 consensus_5147#1 ACACCGNCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGC 350 ****** ***************************************************** consensus_5147#0 AGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCT 1557 consensus_5147#1 AGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCT 410 ************************************************************ consensus_5147#0 GTACATGCCACAACACGTTCTCTTCAAAAGGAAGAATGTCATCACAAACAACAATGTGGG 1617 consensus_5147#1 GTACATGCCACA-CACGT------------------------------------------ 427 ************ ***** consensus_5147#0 CATGATCTACTGTCAATATCATTTTCATGGGAACACATTGGGCAAGGACTTGGTCTTTGC 1677 consensus_5147#1 -------------------CAATTTCATGGGACAATATTGGGCAAGGACTTGGTCTTTGC 468 ** ********** * ************************ consensus_5147#0 TTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATG 1737 consensus_5147#1 TTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATG 528 ************************************************************ consensus_5147#0 TGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTT 1797 consensus_5147#1 TGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTT 588 ************************************************************ consensus_5147#0 TTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGA 1857 consensus_5147#1 TTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGA 648 ************************************************************ consensus_5147#0 GGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGA 1917 consensus_5147#1 GGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGA 708 ************************************************************ consensus_5147#0 TTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAA 1977 consensus_5147#1 TTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAA 768 ************************************************************ consensus_5147#0 AAATGCAAGCTCATG-------------------- 1992 consensus_5147#1 AAATGCAAGCTCATGTGGTTAATTCATTCTAAAAA 803 *************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||