These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1302 fasta sequence [CTTCATGTGTTATTACAAAACGTACCCTTGACACTTTTACCATTTTTTTAACCATCCTTTTTTTCCCATTTACTGTATAGTCAAAGTTTCACAACCCAAACAAGCAAAAGTGAAGAGAATTACATGAAGGAGACGGCACTGAACTACAACGCGGATGAACAAATAAAATTTAATATTAGGGCATTCCTTTCATGTAGTCTTGTTAAGATTCTTTTCCCTTCTCTAGAGTGTTCTGGTGTTGTAGGCAACCACAGCTTAGTGGCTTCCTTTATCATGCCAAATAAGAAAGAGATAGGCCTCTGCTTTTGTTAGTGTTTCCCCGTGCAAAGGAGGAGTTTTATTTTGTCACAAAATTGAAAGGTAGCAACCATTGTGACATATAATACACCTTTTTTGCATGGAGGAGGAGAAGAAAGCATCTATTCCAGCCCTGCCTTTTTGACAATGCTTAGTTGTCCAAGAGGGGTTTGTTTATATCTCGCTTTACTGCATGATTAAACGGAAAACGCTGGTCATTGTCCATATTAGCAAAAGCTTAATTAGTTAACAGATTCATCTAGAATCAACATCTTGAGCCGCCCCGGGGTGGGGGGGGGACAGGTATTTTGATATGTTTTTGTCACACAGGGAAAAGGAAAATTCAGCCATCCTTGAGATATCATGCACTTGCTTAGCACTGAGAAATTAATTAGATTGTATGCCTTTATTGGAGAACTAACTTCTACATTGTCTCATGGCTTATGTGCATGCTGAGGTAATGAACCGCTATACAAAGATGTAAACGTAAGTGGCAAAAATGAAGCCGGAGAGAGATGCACATCTTGGTGATAAGAGATTGCGACATCGTAGCCATCCTGATTTCTGCAGTTCTCATTCAAGAAAAGGAAAAGGAGACTTTGACCCATCGACTTTTTAACACCGTCGATTTCAGGAACAAAAAAAAGAAAAAGCCATCACGGTCAGGAGTGGTTCACGTCGTCGTCTGGTGAGTTCTTGTTGAGTTCTGGGAGGAGTGAAGAATATGGCGGCCTCGGCCGGCGTCAGTGACGAGCACGTATGCGGTAGCACAGCAGCGACAGAAAATATTCAGAAATAGAAGGGATGCATGCAGAGAGATAGGTGCGTGGCGTCTGCCGTTTGGTGGTAACGTAGAGCCGCTTTAACTCCTGCAGCTAAAATATTTATTAGATGTTCTTTTGCACTGTCAAATTTGTTTTTTTTAAAAGAAATCCTCGAGCTGCAAATTCGAATTTGTTAGGCACATGTCTCATTCTCATTGTTGACGAGTTAATCATTCTTTTT] [+] EMBL AK060386 [CTTCATGTGTTATTACAAAACGTACCCTTGACACTTTTACCATTTTTTTAACCATCCTTTTTTTCCCATTTACTGTATAGTCAAAGTTTCACAACCCAAACAAGCAAAAGTGAAGAGAATTACATGAAGGAGACGGCACTGAACTACAACGCGGATGAACAAATAAAATTTAATATTAGGGCATTCCTTTCATGTAGTCTTGTTAAGATTCTTTTCCCTTCTCTAGAGTGTTCTGGTGTTGTAGGCAACCACAGCTTAGTGGCTTCCTTTATCATGCCAAATAAGAAAGAGATAGGCCTCTGCTTTTGTTAGTGTTTCCCCGTGCAAAGGAGGAGTTTTATTTTGTCACAAAATTGAAAGGTAGCAACCATTGTGACATATAATACACCTTTTTTGCATGGAGGAGGAGAAGAAAGCATCTATTCCAGCCCTGCCTTTTTGACAATGCTTAGTTGTCCAAGAGGGGTTTGTTTATATCTCGCTTTACTGCATGATTAAACGGAAAACGCTGGTCATTGTCCATATTAGCAAAAGCTTAATTAGTTAACAGATTCATCTAGAATCAACATCTTGAGCCGCCCCGGGGTGGGGGGGGGACAGGTATTTTGATATGTTTTTGTCACACAGGGAAAAGGAAAATTCAGCCATCCTTGAGATATCATGCACTTGCTTAGCACTGAGAAATTAATTAGATTGTATGCCTTTATTGGAGAACTAACTTCTACATTGTCTCATGGCTTATGTGCATGCTGAGGTAATGAACCGCTATACAAAGATGTAAACGTAAGTGGCAAAAATGAAGCCGGAGAGAGATGCACATCTTGGTGATAAGAGATTGCGACATCGTAGCCATCCTGATTTCTGCAGTTCTCATTCAAGAAAAGGAAAAGGAGACTTTGACCCATCGACTTTTTAACACCGTCGATTTCAGGAACAAAAAAAAGAAAAAGCCATCACGGTCAGGAGTGGTTCACGTCGTCGTCTGGTGAGTTCTTGTTGAGTTCTGGGAGGAGTGAAGAATATGGCGGCCTCGGCCGGCGTCAGTGACGAGCACGTATGCGGTAGCACAGCAGCGACAGAAAATATTCAGAAATAGAAGGGATGCATGCAGAGAGATAGGTGCGTGGCGTCTGCCGTTTGGTGGTAACGTAGAGCCGCTTTAACTCCTGCAGCTAAAATATTTATTAGATGTTCTTTTGCACTGTCAAATTTGTTTTTTTTAAAAGAAATCCTCGAGCTGCAAATTCGAATTTGTTAGGCACATGTCTCATTCTCATTGTTGACGAGTTAATCATTCTTTTT] consensusID : consensus_5148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [TTTTTTTTTTTTTCAGGAGGGGTTCACGTCGTCGTCTGGGGAGTTCTTGTTGAGTTCTGGGAGTGAAAAATATGGCGGCCTCGGCCGGCGTCAGTGACGAGCACGTATGCGGTAGCACAGCAGCGACAGAGAATATTCAGAAATAGAAGGGATGCATGCAGAGAGATAGGTCAACTTTATACACGGTTTCGATGTTGTTGGACGGACGGACTGAGAGATGATGGGCTGGCCCAAGCCTATTACACTACGGCCCAAGAGTACGTTTCCCCGTCCCCTTTTCTCTACCTGCATTCGGCCTGCCAAAGTTTGCTGCTTACAGCTTTACGTTGGAGCTGTTTTTCTCTCTTTTCATCTCACCCGTAGTTTTCTCTCTTCGTCGTAAAACTAGTACTATATTATACTGCATGCACTGTACATGTACATCCGTAGATTACGCATGATTACGGGGACAAATGTCCTATACCGTATCTTTAGTTTGGACTTCTAGATACTATTGCTACGTACGTACTGTACTAAAAAAAGTCTAAAATACGTATTGCACAATACGTACGTAGTAAAATACGTATCGGAACAATACCGTACCTACTCTTGTCTAGTAGGTCGACCGATCCACCTATGTTCAGGGGCGCCTCACACCCCCCAAATCCCTTCTCATTCTCAGCCATCTATATATTAGCTCTCATTCACCAG] [+] EMBL CA760080 [TTTTTTTTTTTTTCAGGAGGGGTTCACGTCGTCGTCTGGGGAGTTCTTGTTGAGTTCTGGGAGTGAAAAATATGGCGGCCTCGGCCGGCGTCAGTGACGAGCACGTATGCGGTAGCACAGCAGCGACAGAGAATATTCAGAAATAGAAGGGATGCATGCAGAGAGATAGGTCAACTTTATACACGGTTTCGATGTTGTTGGACGGACGGACTGAGAGATGATGGGCTGGCCCAAGCCTATTACACTACGGCCCAAGAGTACGTTTCCCCGTCCCCTTTTCTCTACCTGCATTCGGCCTGCCAAAGTTTGCTGCTTACAGCTTTACGTTGGAGCTGTTTTTCTCTCTTTTCATCTCACCCGTAGTTTTCTCTCTTCGTCGTAAAACTAGTACTATATTATACTGCATGCACTGTACATGTACATCCGTAGATTACGCATGATTACGGGGACAAATGTCCTATACCGTATCTTTAGTTTGGACTTCTAGATACTATTGCTACGTACGTACTGTACTAAAAAAAGTCTAAAATACGTATTGCACAATACGTACGTAGTAAAATACGTATCGGAACAATACCGTACCTACTCTTGTCTAGTAGGTCGACCGATCCACCTATGTTCAGGGGCGCCTCACACCCCCCAAATCCCTTCTCATTCTCAGCCATCTATATATTAGCTCTCATTCACCAG] consensusID : consensus_5148#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [TTTTTTTTTTTTTTTTTATTTTTTTTTTTTTAGATCTAACGATTCAAAATTATGTAAAACTTACATATAAGTTACACTGTAGTTACATGCAAGTTACAATGGAATTATATATAAGTTACAATGGAATTACACTATGATTATACTATAATTATATTTGGCAAATTTTTAGGAGAAAATTTATCGACAAATGAATAGGTAGTCCCACTTATAATTATTTATACGGATCCATATCTACTCCGAAAACGGAGTAGGTGGTGGGCATTCCTTTGCATCTCTTGGAGCTAATAAGCTACATATATGCTTATATGCCACCCTAGCTCTAGCCCAATAGTATTCAATCCAGTAAGCATATATACAGGGCCGACCCTGCTCGATCGATCGAATGCGATGCTCTGCTGACCATGCAAAAAGATCATCATGCTAGCTAACTGCAGATACCAAAGACCTTGTGTCTGCACCATCCGTTTCCGATCGACCAGATCCGCCCATCACACAGCATTCTTGGGCCGTAGTGTAATAGGCTTGGGCCAGCCCATCATCTCTCAGTCAGTCCGTCCAACAACATCGAAGCCGTGTATAAAGTTGACCTATCTCTCTGCATGCATCCCTTCTATTTCTGAATATTTTCTGTCGCTGCTGTGCTACCGCATACGTGCTCGTCACTGACGCCGGNCGAGG] [+] EMBL CA760173 [TTTTTTTTTTTTTTTTTATTTTTTTTTTTTTAGATCTAACGATTCAAAATTATGTAAAACTTACATATAAGTTACACTGTAGTTACATGCAAGTTACAATGGAATTATATATAAGTTACAATGGAATTACACTATGATTATACTATAATTATATTTGGCAAATTTTTAGGAGAAAATTTATCGACAAATGAATAGGTAGTCCCACTTATAATTATTTATACGGATCCATATCTACTCCGAAAACGGAGTAGGTGGTGGGCATTCCTTTGCATCTCTTGGAGCTAATAAGCTACATATATGCTTATATGCCACCCTAGCTCTAGCCCAATAGTATTCAATCCAGTAAGCATATATACAGGGCCGACCCTGCTCGATCGATCGAATGCGATGCTCTGCTGACCATGCAAAAAGATCATCATGCTAGCTAACTGCAGATACCAAAGACCTTGTGTCTGCACCATCCGTTTCCGATCGACCAGATCCGCCCATCACACAGCATTCTTGGGCCGTAGTGTAATAGGCTTGGGCCAGCCCATCATCTCTCAGTCAGTCCGTCCAACAACATCGAAGCCGTGTATAAAGTTGACCTATCTCTCTGCATGCATCCCTTCTATTTCTGAATATTTTCTGTCGCTGCTGTGCTACCGCATACGTGCTCGTCACTGACGCCGGNCGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5148#0 CTTCATGTGTTATTACAAAACGTACCCTTGACACTTTTACCATTTTTTTAACCATCCTTT 60 consensus_5148#1 ------------------------------------------------------------ consensus_5148#2 ------------------------------------------------------------ consensus_5148#0 TTTTCCCATTTACTGTATAGTCAAAGTTTCACAACCCAAACAAGCAAAAGTGAAGAGAAT 120 consensus_5148#1 ------------------------------------------------------------ consensus_5148#2 ------------------------------------------------------------ consensus_5148#0 TACATGAAGGAGACGGCACTGAACTACAACGCGGATGAACAAATAAAATTTAATATTAGG 180 consensus_5148#1 ------------------------------------------------------------ consensus_5148#2 ------------------------------------------------------------ consensus_5148#0 GCATTCCTTTCATGTAGTCTTGTTAAGATTCTTTTCCCTTCTCTAGAGTGTTCTGGTGTT 240 consensus_5148#1 -----------------------------TTTTTTTTTTTTTCAGGAGGGGTTCA-CGTC 30 consensus_5148#2 -----------------------------TTTTTTTTTTTTTTTTTATTTTTTTTTTTTT 31 * **** ** * * * * consensus_5148#0 GTAGGCAACCACAGCTTAGTGGCTTCCTTTATCATGCCAAATAAGAAAGAGATAGGCCTC 300 consensus_5148#1 GTC----------GTCTGGGGAGTTCTTGTTGAGTTCTGGGAGTGAAAAATATGG----C 76 consensus_5148#2 AGA-----------TCTAACGATTCAAAATTATGTAAAACTTACATATAAGTTACA---C 77 * * * * * * * * * consensus_5148#0 TGCTTTTGTTAGTGTTTCCCCGTGCAAAGGAGGAGTTTTATTTTGTCACAAAATTGAAAG 360 consensus_5148#1 GGCCTCGGCCGGCGT----CAGTG---ACGAGCACGTATGCGGTAGCACAGCAGCGACAG 129 consensus_5148#2 TGTAGTTACATGCAAGTTACAATG----GAATTATATATAAGTTACAATGGAATTACACT 133 * * * ** * * * * * * * consensus_5148#0 GTAGCAACCATTGTGACATATAATACACCTTTTTTGCATGGAGGAGGAGAAGAAAGCATC 420 consensus_5148#1 AGAATATTCA----GAAATAGAAGGGA-------TGCATGCAGAGAGATAGGTCAACTTT 178 consensus_5148#2 ATGATTATACTATAATTATATTTGGCA--------AATTTTTAGGAGAAAATTTATCGAC 185 *** * * ** * * * consensus_5148#0 -TATTCCAGCCCTGCCTTTTTGACAATGCTTAGTTGTCCAAGAGGGGTTTGTTTATATCT 479 consensus_5148#1 ATACACGGTTTCGATGTTGTTGGACGGACGGACTGAGAGATGATGGGCTGGCCCAAGCCT 238 consensus_5148#2 AAAT---GAATAGGTAGTCCCACTTATAATTATTTATACG---------GATCCATATCT 233 * * * * * ** consensus_5148#0 CGCTTTACTGCATGATTAAACGGAAAACGCTGGTCATTGTCCATATTAGCAAAAGCTTAA 539 consensus_5148#1 ---ATTACACTACGGCCCAA--GAGTACGTT--TCCCCGTCCCCTTTT-------CTCTA 284 consensus_5148#2 ACTCCGAAAACG-GAGTAGGTGGTGGGCATT--CCTTTGCATCTCTTGG-----AGCTAA 285 * * * * * * * ** * consensus_5148#0 TTAGTTAACAGATTCATCTAGAATCAACATCTTGAGCCGCCCCGGGGTGGGGGGGGGACA 599 consensus_5148#1 CCTGCATTCGGCCTG--CCAAAGTTTGCTGCTT--ACAGCTTTACGTTGG---------A 331 consensus_5148#2 TAAGCTA-CATATATGCTTATA--TGCCACCCT----AGCTCTAGCCCAA---------- 328 * * * * * * * ** consensus_5148#0 GGTATTTTGATATGTTTTTGTCACACAGGGAAAAGGAAAATTCAGCCATC---CTTGAGA 656 consensus_5148#1 GCTGTTTTTCTCTCTTTTCATCTCACCCGTAGTTTTCTCTCTTCGTCGTAAAACTAGTAC 391 consensus_5148#2 --TAGTATTCAATCCAGTAAGCATATATACAGGGCCGACCCTGCTCGATCGATCGAATGC 386 * * * * * * * * * * * consensus_5148#0 TATCATGCACT---TGCTTAGCACTGAGA-AATTAATTAGATTGTATGCCTTTATTGGAG 712 consensus_5148#1 TATATTATACTGCATGCACTGTACATGTA-CATCCGT-AGATTACGCATGATTAC-GGGG 448 consensus_5148#2 GATGCTCTGCTG---ACCATGCAAAAAGATCATCATGCTAGCTAACTGCAGATACCAAAG 443 ** * ** * * * * ** * ** * consensus_5148#0 AACTAACTTCTACATTGTCTCATGGCTTATGTGCATGCTGAGGTAATGAACCGCTATACA 772 consensus_5148#1 ACAAATGTCCTATACCGTATCTT---TAGTTTGGACTTCTAGATACT--ATTGCTACGTA 503 consensus_5148#2 ACCTTGTGTCTGCACCATCCGTT------TCCGATCGACCAGATCCG--CCCATCACACA 495 * ** * * * * * ** * * * consensus_5148#0 AAGA-TGTAAACGTAAGTGGCAAAAATGAAGCCGGAGAGAGATGCACATCTTGGTGATAA 831 consensus_5148#1 CGTACTGTACTAAAAAAAGTCTAAAATACGTATTGCACAATACGTACGTAGTAA-AATAC 562 consensus_5148#2 GCATTCTTGGGCCGTAGTGT----AATA-GGCTTGGGCCAGCCCATCATCTCTCAGTCAG 550 * * * *** * * * * * consensus_5148#0 GAGATTG--CGACATCGTAGCCATCCTGATTTCTGCAGTT--CTCATTCAAGAAAAGGAA 887 consensus_5148#1 GTATCGGAACAATACCGTACCTACTCTTGTCTAGTAGGTCGACCGATCCACCTATGTTCA 622 consensus_5148#2 TCCGTCCAACAACATCGAAGCC------GTGTATAAAGTTGACCTATCTCTCTGCATGCA 604 * * * ** * * * * ** * ** * consensus_5148#0 AAGGAGACTTTGACCCATCGACTTTTTAACACCGTCGATTTCAGGAACAAAAAAAAGAAA 947 consensus_5148#1 GGGGCGCCTCACACCCCCCAAATCCCT-----TCTCATTCTCAGCCATCTATATATTAGC 677 consensus_5148#2 ----TCCCTTCTATTTCTGAATATTTT----CTGTCGCTGCTGTGCTACCGCATACGTGC 656 ** * * * ** * * * consensus_5148#0 AAGCCATCACGGTCAGGAGTGGTTCACGTCGTCGTCTGGTGAGTTCTTGTTGAGTTCTGG 1007 consensus_5148#1 TCTCATTCACCAG----------------------------------------------- 690 consensus_5148#2 TCGTCACTGACGCCGGNCGAGG-------------------------------------- 678 consensus_5148#0 GAGGAGTGAAGAATATGGCGGCCTCGGCCGGCGTCAGTGACGAGCACGTATGCGGTAGCA 1067 consensus_5148#1 ------------------------------------------------------------ consensus_5148#2 ------------------------------------------------------------ consensus_5148#0 CAGCAGCGACAGAAAATATTCAGAAATAGAAGGGATGCATGCAGAGAGATAGGTGCGTGG 1127 consensus_5148#1 ------------------------------------------------------------ consensus_5148#2 ------------------------------------------------------------ consensus_5148#0 CGTCTGCCGTTTGGTGGTAACGTAGAGCCGCTTTAACTCCTGCAGCTAAAATATTTATTA 1187 consensus_5148#1 ------------------------------------------------------------ consensus_5148#2 ------------------------------------------------------------ consensus_5148#0 GATGTTCTTTTGCACTGTCAAATTTGTTTTTTTTAAAAGAAATCCTCGAGCTGCAAATTC 1247 consensus_5148#1 ------------------------------------------------------------ consensus_5148#2 ------------------------------------------------------------ consensus_5148#0 GAATTTGTTAGGCACATGTCTCATTCTCATTGTTGACGAGTTAATCATTCTTTTT 1302 consensus_5148#1 ------------------------------------------------------- consensus_5148#2 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||