These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 684 fasta sequence [AAGCCTGCTCCTCTGCATCAACTGTTTGCTACCCAGTACAGTAGAGGCCTGCACTTGCAAGTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTGGACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGATTGATATGATTTGATGTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGGAAAGAATGAAAATGAAGAACAACA] [+] EMBL CF337420 [AAGCCTGCTCCTCTGCATCAACTGTTTGCTACCCAGTACAGTAGAGGCCTGCACTTGCAAGTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAG ] [+] EMBL AK109211 [ CTCTGCATCAACTGTTTGCTGCCCAGTACAGTAGAGGCCTGCACTTGCAAGTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCCGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTGGACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGATTGATATGATTTGATGTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGGAAAGAATGAAAATGAAGAACAACA] consensusID : consensus_5151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [CCTCAAGAAAGGGTCCATGGGGCCATATTTGTGGTGGAGGCTTTTTAGTAAATCTTTAGGCTTCGATTGATATGATTTGATGTGGCCCAAAGATTTATAGTAAATCTTTGGGCTGGTTGTCTTTTCTAACGAAATTTCCGGAAAGAATAAAAATAAAAACCACCAATTCGGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF317959 [CCTCAAGAAAGGGTCCATGGGGCCATATTTGTGGTGGAGGCTTTTTAGTAAATCTTTAGGCTTCGATTGATATGATTTGATGTGGCCCAAAGATTTATAGTAAATCTTTGGGCTGGTTGTCTTTTCTAACGAAATTTCCGGAAAGAATAAAAATAAAAACCACCAATTCGGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5151#0 AAGCCTGCTCCTCTGCATCAACTGTTTGCTACCCAGTACAGTAGAGGCCTGCACTTGCAA 60 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 GTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCT 120 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 GCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGC 180 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 GCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCT 240 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 CGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGC 300 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 CCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGT 360 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 CTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCA 420 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 GCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAA 480 consensus_5151#1 ------------------------------------------------------------ consensus_5151#0 TGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTG 540 consensus_5151#1 ---------------------------------------CCTCAAGAAAGGGTCCATGGG 21 *********** ******* * consensus_5151#0 GACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGATTGATATGATTTGAT 600 consensus_5151#1 GCCATATTTGTGGTGGAGGCTTTTTAGTAAATCTTTAGGCTTCGATTGATATGATTTGAT 81 * **** **** ** ** ***** ************* ********************** consensus_5151#0 GTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGG 660 consensus_5151#1 GTGGCCCAAAGATTTATAGTAAATCTTTGGGCTGGTTGTCTTTTCTAACGAAATTTCCGG 141 ** ** *********************** *** ******** *** *** ********* consensus_5151#0 AAAGAATGAAAATGAAGAACAACA------------------------------------ 684 consensus_5151#1 AAAGAATAAAAATAAAAACCACCAATTCGGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAA 201 ******* ***** ** * ** ** consensus_5151#0 ------------------ consensus_5151#1 AAAAAAAAAAAAAAAAAA 219 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||