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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5151 cluster # 5151       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5151#0 length = 684 sequences # 2  
consensus_5151#1 length = 219 sequences # 1  

consensusID : consensus_5151#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 684
fasta sequence
                              [AAGCCTGCTCCTCTGCATCAACTGTTTGCTACCCAGTACAGTAGAGGCCTGCACTTGCAAGTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTGGACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGATTGATATGATTTGATGTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGGAAAGAATGAAAATGAAGAACAACA]

[+] EMBL CF337420             [AAGCCTGCTCCTCTGCATCAACTGTTTGCTACCCAGTACAGTAGAGGCCTGCACTTGCAAGTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAG                                                                                                                                                                                         ]
[+] EMBL AK109211             [          CTCTGCATCAACTGTTTGCTGCCCAGTACAGTAGAGGCCTGCACTTGCAAGTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCTGCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGCGCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCTCGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGCCCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGTCTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCAGCCGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAATGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTGGACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGATTGATATGATTTGATGTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGGAAAGAATGAAAATGAAGAACAACA]


>consensus_5151#0 AAGCCTGCTCCTCTGCATCAACTGTTTGCTACCCAGTACAGTAGAGGCCTGCACTTGCAA GTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCT GCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGC GCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCT CGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGC CCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGT CTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCA GCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAA TGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTG GACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGATTGATATGATTTGAT GTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGG AAAGAATGAAAATGAAGAACAACA



consensusID : consensus_5151#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence
                              [CCTCAAGAAAGGGTCCATGGGGCCATATTTGTGGTGGAGGCTTTTTAGTAAATCTTTAGGCTTCGATTGATATGATTTGATGTGGCCCAAAGATTTATAGTAAATCTTTGGGCTGGTTGTCTTTTCTAACGAAATTTCCGGAAAGAATAAAAATAAAAACCACCAATTCGGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF317959             [CCTCAAGAAAGGGTCCATGGGGCCATATTTGTGGTGGAGGCTTTTTAGTAAATCTTTAGGCTTCGATTGATATGATTTGATGTGGCCCAAAGATTTATAGTAAATCTTTGGGCTGGTTGTCTTTTCTAACGAAATTTCCGGAAAGAATAAAAATAAAAACCACCAATTCGGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_5151#1 CCTCAAGAAAGGGTCCATGGGGCCATATTTGTGGTGGAGGCTTTTTAGTAAATCTTTAGG CTTCGATTGATATGATTTGATGTGGCCCAAAGATTTATAGTAAATCTTTGGGCTGGTTGT CTTTTCTAACGAAATTTCCGGAAAGAATAAAAATAAAAACCACCAATTCGGTTTCAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5151#0      AAGCCTGCTCCTCTGCATCAACTGTTTGCTACCCAGTACAGTAGAGGCCTGCACTTGCAA 60
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      GTTGCAACTGCAAGCAATGGCGGGAAGCGGGAGCGGGACACCGTGCGCGTCGTGCAAGCT 120
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      GCTGCGGCGGCGGTGCACGTCGGAGTGCGTGTTCGCGCCCTACTTCCCGGCGGAGGAGGC 180
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      GCAGCGGTTCGCCATGGTGCACCGGGTGTTCGGCGCCAGCAACGTCAGCAAGATGCTGCT 240
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      CGATGTGCCGCCGCCGCAGAGGCCCGACGCCGTCAGCAGCCTCGTCTACGAGGCCAACGC 300
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      CCGTATGAGGGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGAACCAAGT 360
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      CTCCCAGCTCCAGATGCAGCTCGCCCTCGCCCACGCCGAGACCGCCGCCCTGCAACTCCA 420
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      GCTGCAGCAGCAGCACCAAGATCAAGATGACCACCACCACCAGCAGTGCATCCTGGAGAA 480
consensus_5151#1      ------------------------------------------------------------
                                                                                  

consensus_5151#0      TGCTGCTGCTCATCACCAGCTGATGCTGCAGGAGGCATTCCTCAAGAAAGAGTCCATGTG 540
consensus_5151#1      ---------------------------------------CCTCAAGAAAGGGTCCATGGG 21
                                                             *********** ******* *

consensus_5151#0      GACATAATTGTAGTAGATGCTTTCTAGTAAATCTTTATGCTTCGATTGATATGATTTGAT 600
consensus_5151#1      GCCATATTTGTGGTGGAGGCTTTTTAGTAAATCTTTAGGCTTCGATTGATATGATTTGAT 81
                      * **** **** ** ** ***** ************* **********************

consensus_5151#0      GTTGCACAAAGATTTATAGTAAATCTTTGTGCTTGTTGTCTTCTCTTACGTAATTTCCGG 660
consensus_5151#1      GTGGCCCAAAGATTTATAGTAAATCTTTGGGCTGGTTGTCTTTTCTAACGAAATTTCCGG 141
                      ** ** *********************** *** ******** *** *** *********

consensus_5151#0      AAAGAATGAAAATGAAGAACAACA------------------------------------ 684
consensus_5151#1      AAAGAATAAAAATAAAAACCACCAATTCGGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAA 201
                      ******* ***** ** * ** **                                    

consensus_5151#0      ------------------
consensus_5151#1      AAAAAAAAAAAAAAAAAA 219
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)