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Oryza sativa
cluster # 5152 cluster # 5152       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5152#0 length = 1698 sequences # 3  

consensusID : consensus_5152#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1698
fasta sequence
                              [CTGAGCTTTCTGTCCGCATCCGCGGATCTTGAGGTTCTTGATGGGGGAAGGCAGGGCCATGCAGTTGCAGTATCAAGCGGCCTGGAGATGGATTTGATTCTGGGCAGTTCAATGATCAACTTTTACTGTAAGGTTGGTTTGGTGGAGGCTGCAGAGGTGATATTTGAGCAGATGGTTGAAAGAGATATTGTCACCTGGAATCTGATGATTTCAGGATATTTGCAGGATGGGCAAACTGACAAAGCCCTTACCACATGCCATAGAATGCTGGAGAGTGGCCTGAAGTTTGATTGTGTGACGTTAGCGTCCGTTATCATGGCTTGCGTGAAATCTTACAGAATGGAGGTGGGTGGAGCTGCTCATGCTTACGCAGTGAGAAACAATCTTGAATCAGATAAAACGGTTTTTTGTAGCCTGATAGAATTGTATTCAAGTAGTGGGAGAATCGAACAAATGCGCAGAGTATTTGATTCAATTAGACGGAGAGATATAGCCACGTGGAAAGCGATGATCTGTGCTTATGCAGACCATGGAATGGGTTCTGAGGCTCTGAAGCTTTTATATCAAATGCAGCTTGAAGGCACATCTCCAACTGCAGCATGTTGGGATTCAGTACTTTCAGCTTTTATTCGAAATGGACAGTTAGATGATGCCCTAAGCACCTTCTATGAGATGCTTCAAACGAGCACACGCCCCAATCTGCGGACATGGAGTCTGTTAATAAGCGGCTTGTCTCGAAATGGTATGCATCCTGAGGTTATGAATCTATGTTGCAAGATGCAAGAAGTAGAGCCAGCACCTAGTCCAACAATATTTTCTGCAGCACTTCTTGCTGTTAAATCTGCAGCTTCAGTACAGTATGGAAAAGCAATGCACGCATGCATTGTTAAGAAGGGCCTATTATTGTCGAAATCTGTGGTGCAGTCGCTGCTAAACATGTATGGTAGCTTCAATGATAGAGGCACAGTAGAGAGTTTGCTAAGATTTCTTGCTGCTGCACAGTAAATAATTTCAGGGCGTCAAGAATGTGGTGCTAGTAAAATAGGACATACAGGTTTACAGG-TTACAGCTGTACATAAATACAT-GGC-GTTTGCACATATGAATTCACATTC-ATAATACAAAAAAAATTTTGAGTGATGGAGTATGGACTAAATCAGAGTGGTCATGAAACAAAGATACGTCATACCAGTTTGATACGAAATAACATCTCTTACATGATTGTATTAACCTTGCAGATACATTACAGAGTATGCATCTATTGTTGGGAGGCATTATTCCTAAAATCAGAAGGTTCTGATAAAAGAACCAATCACCTTAAAGGGCTGAAACCAGCGAGTAAACAGTGTTTCTGTGGCCACATGACTCTCTTTGAGACCTACAGCTAGTCAGCTACAAGTGGTTGAATAATTTCAAGAAAAGCATAACTGTTTTAGTCACTGTAACGATGAATATGATAACATGCTGACAGATGTGCTGCAGTTCTGTTGTCATCCAATTGTTCGGTTTTGAATTAGGATCGCTACTCTGTGCTGGCCCTTTTTCGGATACTGTCAAAGAACAATGTCCAGATGTTATGGGCAACTTATTATCATTATATAGGTCATTACTTCTTTTCACACTGCAAACAAAAGTGTAACTGTATATTCCTCCTGTAAAGTGTCAACTCATTGTACATATCTTTCTGAACAACTATACACA]

[+] EMBL AK062372             [CTGAGCTTTCTGTCCGCATCCGCGGATCTTGAGGTTCTTGATGGGGGAAGGCAGGGCCATGCAGTTGCAGTATCAAGCGGCCTGGAGATGGATTTGATTCTGGGCAGTTCAATGATCAACTTTTACTGTAAGGTTGGTTTGGTGGAGGCTGCAGAGGTGATATTTGAGCAGATGGTTGAAAGAGATATTGTCACCTGGAATCTGATGATTTCAGGATATTTGCAGGATGGGCAAACTGACAAAGCCCTTACCACATGCCATAGAATGCTGGAGAGTGGCCTGAAGTTTGATTGTGTGACGTTAGCGTCCGTTATCATGGCTTGCGTGAAATCTTACAGAATGGAGGTGGGTGGAGCTGCTCATGCTTACGCAGTGAGAAACAATCTTGAATCAGATAAAACGGTTTTTTGTAGCCTGATAGAATTGTATTCAAGTAGTGGGAGAATCGAACAAATGCGCAGAGTATTTGATTCAATTAGACGGAGAGATATAGCCACGTGGAAAGCGATGATCTGTGCTTATGCAGACCATGGAATGGGTTCTGAGGCTCTGAAGCTTTTATATCAAATGCAGCTTGAAGGCACATCTCCAACTGCAGCATGTTGGGATTCAGTACTTTCAGCTTTTATTCGAAATGGACAGTTAGATGATGCCCTAAGCACCTTCTATGAGATGCTTCAAACGAGCACACGCCCCAATCTGCGGACATGGAGTCTGTTAATAAGCGGCTTGTCTCGAAATGGTATGCATCCTGAGGTTATGAATCTATGTTGCAAGATGCAAGAAGTAGAGCCAGCACCTAGTCCAACAATATTTTCTGCAGCACTTCTTGCTGTTAAATCTGCAGCTTCAGTACAGTATGGAAAAGCAATGCACGCATGCATTGTTAAGAAGGGCCTATTATTGTCGAAATCTGTGGTGCAGTCGCTGCTAAACATGTATGGTAGCTTCAATGATAGAGGCACAGTAGAGAGTTTGCTAAGATTTCTTGCTGCTGCACAGTAAATAATTTCAGGGCGTCAAGAATGTGGTGCTAGTAAAATAGGACATACAGGTTTACAGG TTACAGCTGTACATAAATACAT G                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BQ908032             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGCACATCTCCAACTGCAGCATGTTGGGATTCAGTACTTTCAGCTTTTATTCGAAATGGACAGTTAGATGATGCCCTAAGCACCTTCTATGAGATGCTTCAAACGAGCACACGCCCC ATCTGCGGACATGGAGTCTGTTAATAAGCGGCTTGTCTCGAAATGGTATGCATCCTGAGGTTATGAATCTATGTTGCAAGATGCAAGAAGTAGAGCCAGCACCTAGTCCAACAATATTTTCTGCAGCACTTCTTGCTGTTAAATCTGCAGCTTCAGTACAGTATGGAAAAGCAATGCACGCATGCATTGTTAAGAAGGGCCTATTATTGTCGAAATCTGTGGTGCAGTCGCTGCTAAACATGTATGGTAGCTTCAATGATAGAGGCACAGTAGAGAGTTTGCTAAGATTTCTTGCTGCTGCACAGTAAATAATTTCAGGGCGTCAAGAATGTGGTGCTAGTAAAATAGGACATACAGGTTTACAGGTTTACAGCTGTACATAAATACATGGGCGGTTTGCACATATGAATTCACATTCAATAATACAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK058392             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCTTTTATTCGAAATGGACAGTTAGATGATGCCCTAAGCACCTTCTATGAGATGCTTCAAACGAGCACACGCCCCAATCTGCGGACATGGAGTCTGTTAATAAGCGGCTTGTCTCGAAATGGTATGCATCCTGAGGTTATGAATCTATGTTGCAAGATGCAAGAAGTAGAGCCAGCACCTAGTCCAACAATATTTTCTGCAGCACTTCTTGCTGTTAAATCTGCAGCTTCAGTACAGTATGGAAAAGCAATGCACGCATGCATTGTTAAGAAGGGCCTATTATTGTCGAAATCTGTGGTGCAGTCGCTGCTAAACATGTATGGTAGCTTCAATGATAGAGGCACAGTAGAGAGTTTGCTAAGATTTCTTGCTGCTGCACAGTAAATAATTTCAGGGCGTCAAGAATGTGGTGCTAGTAAAATAGGACATACAGGTTTACAGG TTACAGCTGTACATAAATACAT GGC GTTTGCACATATGAATTCACATTC ATAATACAATTCCTATTTTGAGTGATGGAGTATGGACTAAATCAGAGTGGTCATGAAACAAAGATACGTCATACCAGTTTGATACGAAATAACATCTCTTACATGATTGTATTAACCTTGCAGATACATTACAGAGTATGCATCTATTGTTGGGAGGCATTATTCCTAAAATCAGAAGGTTCTGATAAAAGAACCAATCACCTTAAAGGGCTGAAACCAGCGAGTAAACAGTGTTTCTGTGGCCACATGACTCTCTTTGAGACCTACAGCTAGTCAGCTACAAGTGGTTGAATAATTTCAAGAAAAGCATAACTGTTTTAGTCACTGTAACGATGAATATGATAACATGCTGACAGATGTGCTGCAGTTCTGTTGTCATCCAATTGTTCGGTTTTGAATTAGGATCGCTACTCTGTGCTGGCCCTTTTTCGGATACTGTCAAAGAACAATGTCCAGATGTTATGGGCAACTTATTATCATTATATAGGTCATTACTTCTTTTCACACTGCAAACAAAAGTGTAACTGTATATTCCTCCTGTAAAGTGTCAACTCATTGTACATATCTTTCTGAACAACTATACACA]


>consensus_5152#0 CTGAGCTTTCTGTCCGCATCCGCGGATCTTGAGGTTCTTGATGGGGGAAGGCAGGGCCAT GCAGTTGCAGTATCAAGCGGCCTGGAGATGGATTTGATTCTGGGCAGTTCAATGATCAAC TTTTACTGTAAGGTTGGTTTGGTGGAGGCTGCAGAGGTGATATTTGAGCAGATGGTTGAA AGAGATATTGTCACCTGGAATCTGATGATTTCAGGATATTTGCAGGATGGGCAAACTGAC AAAGCCCTTACCACATGCCATAGAATGCTGGAGAGTGGCCTGAAGTTTGATTGTGTGACG TTAGCGTCCGTTATCATGGCTTGCGTGAAATCTTACAGAATGGAGGTGGGTGGAGCTGCT CATGCTTACGCAGTGAGAAACAATCTTGAATCAGATAAAACGGTTTTTTGTAGCCTGATA GAATTGTATTCAAGTAGTGGGAGAATCGAACAAATGCGCAGAGTATTTGATTCAATTAGA CGGAGAGATATAGCCACGTGGAAAGCGATGATCTGTGCTTATGCAGACCATGGAATGGGT TCTGAGGCTCTGAAGCTTTTATATCAAATGCAGCTTGAAGGCACATCTCCAACTGCAGCA TGTTGGGATTCAGTACTTTCAGCTTTTATTCGAAATGGACAGTTAGATGATGCCCTAAGC ACCTTCTATGAGATGCTTCAAACGAGCACACGCCCCAATCTGCGGACATGGAGTCTGTTA ATAAGCGGCTTGTCTCGAAATGGTATGCATCCTGAGGTTATGAATCTATGTTGCAAGATG CAAGAAGTAGAGCCAGCACCTAGTCCAACAATATTTTCTGCAGCACTTCTTGCTGTTAAA TCTGCAGCTTCAGTACAGTATGGAAAAGCAATGCACGCATGCATTGTTAAGAAGGGCCTA TTATTGTCGAAATCTGTGGTGCAGTCGCTGCTAAACATGTATGGTAGCTTCAATGATAGA GGCACAGTAGAGAGTTTGCTAAGATTTCTTGCTGCTGCACAGTAAATAATTTCAGGGCGT CAAGAATGTGGTGCTAGTAAAATAGGACATACAGGTTTACAGGTTACAGCTGTACATAAA TACATGGCGTTTGCACATATGAATTCACATTCATAATACAAAAAAAATTTTGAGTGATGG AGTATGGACTAAATCAGAGTGGTCATGAAACAAAGATACGTCATACCAGTTTGATACGAA ATAACATCTCTTACATGATTGTATTAACCTTGCAGATACATTACAGAGTATGCATCTATT GTTGGGAGGCATTATTCCTAAAATCAGAAGGTTCTGATAAAAGAACCAATCACCTTAAAG GGCTGAAACCAGCGAGTAAACAGTGTTTCTGTGGCCACATGACTCTCTTTGAGACCTACA GCTAGTCAGCTACAAGTGGTTGAATAATTTCAAGAAAAGCATAACTGTTTTAGTCACTGT AACGATGAATATGATAACATGCTGACAGATGTGCTGCAGTTCTGTTGTCATCCAATTGTT CGGTTTTGAATTAGGATCGCTACTCTGTGCTGGCCCTTTTTCGGATACTGTCAAAGAACA ATGTCCAGATGTTATGGGCAACTTATTATCATTATATAGGTCATTACTTCTTTTCACACT GCAAACAAAAGTGTAACTGTATATTCCTCCTGTAAAGTGTCAACTCATTGTACATATCTT TCTGAACAACTATACACA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)