Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5157 cluster # 5157       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5157#0 length = 940 sequences # 3  
consensusID : consensus_5157#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 940
fasta sequence 
                              [TTTTTTTTTTTTTTTCTTTCCATAGCTTATTGTACGTCCTTGACTCTCTCGTTTCAGACCTTCAGTGTCCAGCAGCTCGCTGTCTTCTAAGCTCACTTCCAAGCTAGCTCAAACCAACACCAATAATAGGCCATTGTTGTGTTCAAAATGTTTGCTGATAAGTGATAACTAATTAAATACCTAAGCTGCTCTAATACTAGTATTCAGTTACATAGCTCAGATTGAATCCACTCTCTACTTTATCCATACTTCCAGAGGAAGAAACTGAAAGGTAGTAGTGTTCTAGCAAGGATCCAATATAGCATCGTCGAACAAGTTGTTGTGAATTATGTCACCCGTTTCTTGGTACATGACACTTTACAATAGCATATCATCAACTCTCCACTGCCCTCCGTAATGCACTAATGCTGTCTCAGGAAAGTCCAATGAGAAGCAAACAACAAAAAGATTCCATGCACGTCACGATTAGCAAGCCCTGCTTAGCTTTCCGGCCGGCAAGACACAAAAAACACTAGCTAGCCTAGCAGCATATGCAGCGTCTAATTACACCACACGATCTCGTCGTCTTAATTTGCTGGTGAAATGGAACGTACAAGAAGAGATTCGATCAGAGGTAGACGAAGAGATGGCGCGTTTCGCGAGCTAGCTGGGCTGGACTGGATTCTTCTTTGGCTACATGATGCCCATGCTGTTAGCGTGCTGTAGGCGACGCCGCGTGGCGTCGACGACGTCGAGGGGATCGTCGGCGTCGCCGCCCTCGGTGACGACGGAGGAGACGTAGCTGCAGGCGACGTCGGAGCTCATGGCGGCCGGTAGTGGCGCCCCCGCCGCCGCGGCGCGGAACTTGTGGCGGCAGCTGAAGCAGGTGATCTGGAGCAGCGTGGCGTTGACCTGCCGCACGGCGTGGTCGCGGAGCGCGTGGGCGCGGCTCAACTCCACC]

[+] EMBL CA999230             [TTTTTTTTTTTTTTTCTTTCCATAGCTTATTGTACGTCCTTGACTCTCTCGTTTCAGACCTTCAGTGTCCAGCAGCTCGCTGTCTTCTAAGCTCACTTCCAAGCTAGCTCAAACCAACACCAATAATAGGCCATTGTTGTGTTCAAAATGTTTGCTGATAAGTGATAACTAATTAAATACCTAAGCTGCTCTAATACTAGTATTCAGTTACATAGCTCAGATTGAATCCACTCTCTACTTTATCCATACTTCCAGAGGAAGAAACTGAAAGGTAGTAGTGTTCTAGCAAGGATCCAATATAGCATCGTCGAACAAGTTGTTGTGAATTATGTCACCCGTTTCTTGGTACATGACACTTTACAATAGCATATCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AU172720             [                                                                                                                                                                                                                                                                                                  tttttttttTAGCATCGTCGAACAAGTTGTTGTGAATTATGTCACCCGTTTCTTGGTACATGACACTTTACAATAGCATATCATCAACTCTCCACTGCCCTCCGTAATGCACTAATGCTGTCTCAGGAAAGTCCAATGAGAAGCAAACAACAAAAAGATTCCATGCACGTCACGATTAGCAAGCCCTGCTTAGCTTTCCGGCCGGCAAGACACAAAAAACACTAGCTAGCCTAGCAGCATATGCAGCGTCTAATTACACCACACGATCTCGTCGTCTTAATTTGCTGGTGAAATGGAACGTACAAGAAGAGATTCGATCAGAGGTAGACGAAGAGATGGCGCGTTTCGCGAGCTAGCTGGGCTGGACTGGATTCTTCTTTGGCTACATGATGCCCATGCTGTTAGCGTGCTGTAGGCGACGCCGCG                                                                                                                                                                                                                                ]
[+] EMBL BI305452             [                                                                                                                                                                                                                                                                                                                     GAACAAGTTGTTGTGAATTATGTCACCCGTTTCTTGGTACATGACACTTTACAATAGCATATCATCAACTCTCCACTGCCCTCCGTAATGCACTAATGCTGTCTCAGGAAAGTCCAATGAGAAGCAAACAACAAAAAGATTCCATGCACGTCACGATTAGCAAGCCCTGCTTAGCTTTCCGGCCGGCAAGACACAAAAAACACTAGCTAGCCTAGCAGCATATGCAGCGTCTAATTACACCACACGATCTCGTCGTCTTAATTTGCTGGTGAAATGGAACGTACAAGAAGAGATTCGATCAGAGGTAGACCAAGAGATGGCGCGTTTCGCGAGCTAGCTGGGCTGGACTGGATTCTTCTTTGGCTACATGATGCCCATGCTGTTAGCGTGCTGTAGGCGACGCCGCGTGGCGTCGACGACGTCGAGGGGATCGTCGGCGTCGCCGCCCTCGGTGACGACGGAGGAGACGTAGCTGCAGGCGACGTCGGAGCTCATGGCGGCCGGTAGTGGCGCCCCCGCCGCCGCGGCGCGGAACTTGTGGCGGCAGCTGAAGCAGGTGATCTGGAGCAGCGTGGCGTTGACCTGCCGCACGGCGTGGTCGCGGAGCGCGTGGGCGCGGCTCAACTCCACC]




>consensus_5157#0
TTTTTTTTTTTTTTTCTTTCCATAGCTTATTGTACGTCCTTGACTCTCTCGTTTCAGACC
TTCAGTGTCCAGCAGCTCGCTGTCTTCTAAGCTCACTTCCAAGCTAGCTCAAACCAACAC
CAATAATAGGCCATTGTTGTGTTCAAAATGTTTGCTGATAAGTGATAACTAATTAAATAC
CTAAGCTGCTCTAATACTAGTATTCAGTTACATAGCTCAGATTGAATCCACTCTCTACTT
TATCCATACTTCCAGAGGAAGAAACTGAAAGGTAGTAGTGTTCTAGCAAGGATCCAATAT
AGCATCGTCGAACAAGTTGTTGTGAATTATGTCACCCGTTTCTTGGTACATGACACTTTA
CAATAGCATATCATCAACTCTCCACTGCCCTCCGTAATGCACTAATGCTGTCTCAGGAAA
GTCCAATGAGAAGCAAACAACAAAAAGATTCCATGCACGTCACGATTAGCAAGCCCTGCT
TAGCTTTCCGGCCGGCAAGACACAAAAAACACTAGCTAGCCTAGCAGCATATGCAGCGTC
TAATTACACCACACGATCTCGTCGTCTTAATTTGCTGGTGAAATGGAACGTACAAGAAGA
GATTCGATCAGAGGTAGACGAAGAGATGGCGCGTTTCGCGAGCTAGCTGGGCTGGACTGG
ATTCTTCTTTGGCTACATGATGCCCATGCTGTTAGCGTGCTGTAGGCGACGCCGCGTGGC
GTCGACGACGTCGAGGGGATCGTCGGCGTCGCCGCCCTCGGTGACGACGGAGGAGACGTA
GCTGCAGGCGACGTCGGAGCTCATGGCGGCCGGTAGTGGCGCCCCCGCCGCCGCGGCGCG
GAACTTGTGGCGGCAGCTGAAGCAGGTGATCTGGAGCAGCGTGGCGTTGACCTGCCGCAC
GGCGTGGTCGCGGAGCGCGTGGGCGCGGCTCAACTCCACC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)