These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1851 fasta sequence [TCCCTCCGTCCCAATATAAGTGCATTTAGGACAGGATGTGATATATCCTAGGACTACAAATCTGGACAGTTGTCTGTTCATATTCGTAGTCCTAGGATATGTCACATACTATACTAGGTGTATTTATATTGGGACGGAGGGAGCAGTACTTAAAGTATATTTGCAACTTTTTACTGAACTTGGTGTGCTGTGTCAGGCGACTACTCCAGAGGATTGATTACTTCATGCCTTGACAATGATGTGAAGTAGCATGACCTTGCGATTCATATGGTCGGGGATCGAGGCACATATACACCCAACCCAGTTCATTGAGTGATCAGTAGAGAGATTCTTCCCCTCTTCTCCTGCCAGCTCTTCCAGGTTCTGAGTTCTGACCATGGCGGCTGGAGCGATTCCAATGGCGTACCAGACCACTCCGTCATCGCCAGACTGGCTGAACAAGGGCGACAACGCATGGCAGATGACATCGGCGACCCTCGTCGGCCTGCAGAGCATGCCAGGGCTGGTGATCCTGTACGGCAGCATTGTCTAGAAGAAGTGGGCTATCAACTCGGCGTTCATGGCGCTGTATGCCTTCGCTGCTGTCTGGATCTGCTGGGTTGTCTGGGCATACAACATGTCGTTCGGCGACCGCCTCCTGCCATTCTGGGGTAAGGCACGGCCAGCGCTCGGGCAGAGCTTCCTCGTGGCGCAGTCTGAGCTCACTGCTACCGCTATTCGCTACCACAATGGGTCAGCTGAGGCGCCCATGCTCAAGCCGTTGTACCCAGTCGCCACCATGGTGTACTTCCAGTGCATGTTTGCGAGCATCACCATCATCATCCTCGCAGGCTCACTGCTTGGGCGCATGAACATCAAGGCGTGGATGGCCTTTGTGCCGCTCTGGATCACCTTCTCTTACACGGTCTGCGCCTTCTCGCTCTGGGGTGGCGGTTTCCTCTTCCAGTGGGGTGTCATAGACTACTCTGGTGGCTATGTCATCCATCTCTCTTCTGGCATCGCAGGCCTCACTGCTGCCTACTGGGTTGGACCAAGGTCAGCATCAGATAGGGAGAGATTCCCGCCCAACAACATACTGCTGGTGCTAGCAGGGGCGGGGCTGCTGTGGCTTGGGTGGACAGGTTTCAATGGAGGAGACCCATATTCAGCCAATATTGATTCATCCATGGCAGTGCTCAACACACATATCTGCGCATCCACCAGCCTACTCGTGTGGACAATCCTGGATGTCTTCTTCTTCGGGAAGCCATCGGTAATTGGCGCGGTGCAGGGCATGATCACTGGCCTGGTATGCATCACCCCTGGTGCAGGCCTGGTGCAAGGTTGGGCAGCTATTGTGATGGGAATTCTCTCTGGTAGCATTCCATGGTACACCATGATGGTGCTGCACAAGAAATGGTCATTCATGCAGAGGATTGATGACACGCTTGGTGTCTTCCACACCCATGCGGTGGCTGGGTTCCTTGGTGGCGCCACCACTGGACTCTTCGCCGAGCCCATCCTATGCAGTCTCTTCCTATCTATCCCAGATTCTAAAGGTGCATTCTACGGTGGCCCCGGTGGATCACAGTTCGGGAAGCAGATTGCTGGCGCACTATTTGTCACTGCCTGGAATATTGTTATCACCTCCATCACCTGTGTCATCATCAGCCTAATCCTGCCCCTCCGTATAGCTGATCAAGAACTGCTTATTGGAGATGATGCTGTACACGGTGAGGAGGCATATGCTATCTGGGCAGAGGGAGAGCTCAATGACATGACCCACCACAATGAGAGCACACATAGTGGTGTCTCTGTAGGAGTGACACAGAATGTTTGAACAGTACCCACTTTATTGAGGAAAAAGAAATA] [+] EMBL AK108711 [TCCCTCCGTCCCAATATAAGTGCATTTAGGACAGGATGTGATATATCCTAGGACTACAAATCTGGACAGTTGTCTGTTCATATTCGTAGTCCTAGGATATGTCACATACTATACTAGGTGTATTTATATTGGGACGGAGGGAGCAGTACTTAAAGTATATTTGCAACTTTTTACTGAACTTGGTGTGCTGTGTCAGGCGACTACTCCAGAGGATTGATTACTTCATGCCTTGACAATGATGTGAAGTAGCATGACCTTGCGATTCATATGGTCGGGGATCGAGGCACATATACACCCAACCCAGTTCATTGAGTGATCAGTAGAGAGATTCTTCCCCTCTTCTCCTGCCAGCTCTTCCAGGTTCTGAGTTCTGACCATGGCGGCTGGAGCGATTCCAATGGCGTACCAGACCACTCCGTCATCGCCAGACTGGCTGAACAAGGGCGACAACGCATGGCAGATGACATCGGCGACCCTCGTCGGCCTGCAGAGCATGCCAGGGCTGGTGATCCTGTACGGCAGCATTGTCTAGAAGAAGTGGGCTATCAACTCGGCGTTCATGGCGCTGTATGCCTTCGCTGCTGTCTGGATCTGCTGGGTTGTCTGGGCATACAACATGTCGTTCGGCGACCGCCTCCTGCCATTCTGGGGTAAGGCACGGCCAGCGCTCGGGCAGAGCTTCCTCGTGGCGCAGTCTGAGCTCACTGCTACCGCTATTCGCTACCACAATGGGTCAGCTGAGGCGCCCATGCTCAAGCCGTTGTACCCAGTCGCCACCATGGTGTACTTCCAGTGCATGTTTGCGAGCATCACCATCATCATCCTCGCAGGCTCACTGCTTGGGCGCATGAACATCAAGGCGTGGATGGCCTTTGTGCCGCTCTGGATCACCTTCTCTTACACGGTCTGCGCCTTCTCGCTCTGGGGTGGCGGTTTCCTCTTCCAGTGGGGTGTCATAGACTACTCTGGTGGCTATGTCATCCATCTCTCTTCTGGCATCGCAGGCCTCACTGCTGCCTACTGGGTTGGACCAAGGTCAGCATCAGATAGGGAGAGATTCCCGCCCAACAACATACTGCTGGTGCTAGCAGGGGCGGGGCTGCTGTGGCTTGGGTGGACAGGTTTCAATGGAGGAGACCCATATTCAGCCAATATTGATTCATCCATGGCAGTGCTCAACACACATATCTGCGCATCCACCAGCCTACTCGTGTGGACAATCCTGGATGTCTTCTTCTTCGGGAAGCCATCGGTAATTGGCGCGGTGCAGGGCATGATCACTGGCCTGGTATGCATCACCCCTGGTGCAGGCCTGGTGCAAGGTTGGGCAGCTATTGTGATGGGAATTCTCTCTGGTAGCATTCCATGGTACACCATGATGGTGCTGCACAAGAAATGGTCATTCATGCAGAGGATTGATGACACGCTTGGTGTCTTCCACACCCATGCGGTGGCTGGGTTCCTTGGTGGCGCCACCACTGGACTCTTCGCCGAGCCCATCCTATGCAGTCTCTTCCTATCTATCCCAGATTCTAAAGGTGCATTCTACGGTGGCCCCGGTGGATCACAGTTCGGGAAGCAGATTGCTGGCGCACTATTTGTCACTGCCTGGAATATTGTTATCACCTCCATCACCTGTGTCATCATCAGCCTAATCCTGCCCCTCCGTATAGCTGATCAAGAACTGCTTATTGGAGATGATGCTGTACACGGTGAGGAGGCATATGCTATCTGGGCAGAGGGAGAGCTCAATGACATGACCCACCACAATGAGAGCACACATAGTGGTGTCTCTGTAGGAGTGACACAGAATGTTTGAACAGTACCCACTTTATTGAGGAAAAAGAAATA] consensusID : consensus_5164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 832 fasta sequence [CAAGGGGAAGAATCTCTCTACTGATCACTCAACGAACTGGGTTGGGTGTATATATGCCTCGATCCCCGACTACAAACAATGCTGTGATCTTACTACTTAACTGCAATTCTGTTTTGATAATTAAGCTTACCCATATGAATCGCAAGGTCATGCTACTTCACATCATTGTCAAGGCATGAAGTAATCAATCCTCTGGAGTAGTCGCCTGACACAGCACACCAAGGGTGGCCGAATGCGTGGACTAAACCGCATACTGAAACAATACAAAGAGAAGAAAGCAACATTCAGAAAGGTACTTGGTTGACCTAGAAGAGCTGCATTTCCAGTCTTGAACGGCTCGCGAAAAGGACATCACCTCACGAGGAAGAATAACTGAACAAAAGCAGCTGAGTATCTTTCCCTTCACTCTCTTTCACGACCCCTTCAATGAACTGTAAGAATCATCAAATCAACTCCGAGGTATAGATGGAATTATTCTACGCTTTGATACTTTCACCGT-CCATTCGTCCAAGAAAGTTTAAAGATGTAGCAGTTTGGCATGCATGTTGT-TCCTCTCCTATTGGAGATTCGCACTAC-TTTTCTAATGAGGCGAGACTGTTTGGTACTG-GTTTTTAAGGGACTTTGGTGATACTAAATGCATTTCTGTCAGTGGCCGATCGAGACAGAAGGGGTTGCTGTTGACTTGTTTTGTTTGTGTGCTGTGTAGTACTTATACCAGCTAGAACCCATTTACCACCCATAATAGCACATTGTAATGATCCTTGGGAATGGATGAAAGTATTAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA] [+] EMBL CA764370 [CAAGGGGAAGAATCTCTCTACTGATCACTCAACGAACTGGGTTGGGTGTATATATGCCTCGATCCCCGACTACAAACAATGCTGTGATCTTACTACTTAACTGCAATTCTGTTTTGATAATTAAGCTTACCCATATGAATCGCAAGGTCATGCTACTTCACATCATTGTCAAGGCATGAAGTAATCAATCCTCTGGAGTAGTCGCCTGACACAGCACACCAAGGGTGGCCGAATGCGTGGACTAAACCGCATACTGAAACAATACAAAGAGAAGAAAGCAACATTCAGAAAGGTACTTGGTTGACCTAGAAGAGCTGCATTTCCAGTCTTGAACGGCTCGCGAAAAGGACATCACCTCACGAGGAAGAATAACTGAACAAAAGCAGCTGAGTATCTTTCCCTTCACTCTCTTTCACGACCCCTTCAATGAACTGTAAGAATCATCAAATCAACTCCGAGGTATAGATGGAATTATTCTACGCTTTGATACTTTCACCGT CCATTCGTCCAAGAAAGTTTAAAGATGTAGCAGTTTGGCATGCATGTTGT TCCTCTCCTATTGGAGATTCGCACTAC TTTTCTAATGAGGCGAGACTGTTTGGTACTG GTTTTTAAGGGACTTTGGTGATACTAAATGCATTT ] [+] EMBL BQ907917 [ TACTTTCACCGTGCCATTCGTCCAAGAAAGTTTAAAGATGTAGCAGTTTGGCATGCATGTTGTGTCCTCTCCTATTGGAGATTCGCACTACGTTTTCTAATGAGGCGAGACTGTTTGGTACTGTTTTTTTAAGGGACTTTGGTGATACTAAATGCATTTCTGTCAGTGGCCGATCGAGACAGAAGGGGTTGCTGTTGACTTGTTTTGTTTGTGTGCTGTGTAGTACTTATACCAGCTAGAACCCATTTACCACCCATAATAGCACATTGTAATGATCCTTGGGAATGGATGAAAGTATTAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5164#0 TCCCTCCGTCCCAATATAAGTGCATTTAGGACAGGATGTGATATATCCTAGGACTACAAA 60 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 TCTGGACAGTTGTCTGTTCATATTCGTAGTCCTAGGATATGTCACATACTATACTAGGTG 120 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 TATTTATATTGGGACGGAGGGAGCAGTACTTAAAGTATATTTGCAACTTTTTACTGAACT 180 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 TGGTGTGCTGTGTCAGGCGACTACTCCAGAGGATTGATTACTTCATGCCTTGACAATGAT 240 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 GTGAAGTAGCATGACCTTGCGATTCATATGGTCGGGGATCGAGGCACATATACACCCAAC 300 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 CCAGTTCATTGAGTGATCAGTAGAGAGATTCTTCCCCTCTTCTCCTGCCAGCTCTTCCAG 360 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 GTTCTGAGTTCTGACCATGGCGGCTGGAGCGATTCCAATGGCGTACCAGACCACTCCGTC 420 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 ATCGCCAGACTGGCTGAACAAGGGCGACAACGCATGGCAGATGACATCGGCGACCCTCGT 480 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 CGGCCTGCAGAGCATGCCAGGGCTGGTGATCCTGTACGGCAGCATTGTCTAGAAGAAGTG 540 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 GGCTATCAACTCGGCGTTCATGGCGCTGTATGCCTTCGCTGCTGTCTGGATCTGCTGGGT 600 consensus_5164#1 ------------------CAAGGGGAAGAATCTCTCTACTGATCACTCAACGAACTGGGT 42 ** ** * * ** ** *** * ** * ****** consensus_5164#0 TGTCTGGGCATACAACATGTCGTTCGGCGACCGCC--TCCTGCCATTCTGGGGTAAGGCA 658 consensus_5164#1 TGGGTGTATATATGCCTCGATCCCCGACTACAAACAATGCTGTGATCTTACTACTTAACT 102 ** ** *** * * ** * ** * * *** ** * * consensus_5164#0 CGGCCAGCGCTCGGGCAG---AGCTTCCTCGTGGCGCAGTCTGAGCTCACTGCTACCGCT 715 consensus_5164#1 GCAATTCTGTTTTGATAATTAAGCTTACCCATA-TGAATCGCAAGGTCA-TGCTACTTCA 160 * * * * ***** * * * * * ** *** ****** * consensus_5164#0 ATTCGCTACCACAATGGGTCAGCTGAGGCGCCCATGCTCAAGCCGTTGTACCCAGTCGCC 775 consensus_5164#1 CATCATTGTCAAGGCA-------TGAAG------TAATCAATCCTCTGGAGT-AGTCGCC 206 ** * ** *** * * **** ** ** * ******* consensus_5164#0 -ACCATGGTGTACTTCCAGTGCATGTTTGCGAGCATCACCATCATCATCCTCGCAGGCTC 834 consensus_5164#1 TGACACAGCACACCAAGGGTGGCCGAATGCGTGGACTA--AACCGCATACT----GAAAC 260 ** * ** *** * **** * * * * * *** ** * * consensus_5164#0 ACTGCTTGGGCGCATGAACATCAAGGCGTGGATGGCCTTTGTGCCGCTCTGGATCACCTT 894 consensus_5164#1 AATACAAAGAGAAGAAAGCAACA--TTCAGAAAGGTACTTG-GTTGACCTAGAAGAGCTG 317 * * * * * ** ** * * ** *** * * ** ** * ** consensus_5164#0 CTCTTACACGGTCTGCGCCTTCTCGCTCTGGGGTGGCGGTTTCCTCTTCCAGTGGGGTGT 954 consensus_5164#1 CATTTCCA--GTCTTGAACGGCTCGC---GAAAAGGACATCACCTCACGAGGAAGAATAA 372 * ** ** **** * ***** * ** * **** * * * consensus_5164#0 CATAGACTACTCTGGTGGCTATGTCATCCATCTCTCTTCTGGCATCGCAGGCCTCACTGC 1014 consensus_5164#1 CTGAACAAAAGCAGCTGAGTATCTTTCCCTTCACTCTCTT----TCACGACCCCTTCAAT 428 * * * * * ** *** * ** ** **** * ** * ** * consensus_5164#0 TGCCTACTGGGTTGGACCAAGGTCAGCATCAGATAGGGA-GAGATTCCCGCCCAACAACA 1073 consensus_5164#1 GAACTGTAAGAATC-ATCAAATCAACTCCGAGGTATAGATGGAATTATTCTACGCTTTGA 487 ** * * * *** * ** ** ** * *** * * consensus_5164#0 TACTGCTGGTGCTAGCAGGGGCGGGGCTGCTGTGGCTTGGGTGGACAGGTTTCAATGGAG 1133 consensus_5164#1 TACTTTCACCGTCCATTCGTCCAAGAAAGTTTAAAGATG---TAGCAGTTTGGCATGCAT 544 **** * * * * * * ** *** ** *** * consensus_5164#0 GAGACCCATATTCAGCCAATATTGATTCATCCATGGCAGTGCTCAACACACATATCTGCG 1193 consensus_5164#1 GTTGTTCCTCTC---CTATTGGAGATTCG--CACTACTTTTCTAATGAGGCGAGACTGTT 599 * * * * * * * ***** ** * * ** * * * *** consensus_5164#0 CATCCACCAGCCTACTCGTG---TGGACAATCCTGGATGTCTTCTTCTTCGGGAAGCCAT 1250 consensus_5164#1 TGGT-ACTGGTTTTTAAGGGACTTTGGTGATACTAAATGCATTTCTGTC-----AGTGGC 653 ** * * * * * * ** ** *** ** * * ** consensus_5164#0 CGGTAATTGGCGCGGTGCAGGGCATGATCACTGGCCTGGTATGCATCACCCCTGGTGCAG 1310 consensus_5164#1 CGAT------CGAGACAGAAGGGGTTGCTGTTGACTTGTTTTGT-TTGTGTGCTGTGTAG 706 ** * ** * * ** * ** * ** * ** * *** ** consensus_5164#0 GCCTGGTGCAAGGTTGGGCAGCTATTGTGATGGGAATTCTCTCTGGTAGCATTCCATGGT 1370 consensus_5164#1 TACTTATACCAGCTAGAACCCATTTACCACCCATAATAGCACATTGTAATGATCCTTGGG 766 ** * * ** * * * * * *** * *** *** *** consensus_5164#0 ACACCATGATGGTGCT--GCACAAGAAATGGTCATTCATGCAGAGGATTGATGACACGCT 1428 consensus_5164#1 AATGGATGAAAGTATTAAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAA 826 * **** ** * ** ** *** * * * * * * * ** consensus_5164#0 TGGTGTCTTCCACACCCATGCGGTGGCTGGGTTCCTTGGTGGCGCCACCACTGGACTCTT 1488 consensus_5164#1 AAAAAA------------------------------------------------------ 832 consensus_5164#0 CGCCGAGCCCATCCTATGCAGTCTCTTCCTATCTATCCCAGATTCTAAAGGTGCATTCTA 1548 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 CGGTGGCCCCGGTGGATCACAGTTCGGGAAGCAGATTGCTGGCGCACTATTTGTCACTGC 1608 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 CTGGAATATTGTTATCACCTCCATCACCTGTGTCATCATCAGCCTAATCCTGCCCCTCCG 1668 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 TATAGCTGATCAAGAACTGCTTATTGGAGATGATGCTGTACACGGTGAGGAGGCATATGC 1728 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 TATCTGGGCAGAGGGAGAGCTCAATGACATGACCCACCACAATGAGAGCACACATAGTGG 1788 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 TGTCTCTGTAGGAGTGACACAGAATGTTTGAACAGTACCCACTTTATTGAGGAAAAAGAA 1848 consensus_5164#1 ------------------------------------------------------------ consensus_5164#0 ATA 1851 consensus_5164#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||