Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5165 cluster # 5165       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5165#0 length = 1210 sequences # 3  

consensusID : consensus_5165#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1210
fasta sequence
                              [AAAAATTATCATCCCGCCGCGACGCCATGGCCGCTACCGTCCTCCTCCTCTCGCCGCGCCTCGCCGTCGCGCCTCTACGGCCGCACCCCAGGCTGGGGCTGACCCCCACCGCAGTCGGACGGCCTCTTCCCCTCGCCTACCTCGGCCGCCGCGCCGCCGCCGCGAGGCAGCTCGCCGCCGTCGCCGACCGGAACGTCTACAACGGCGTCTACGGCCCATGGACCGTCGAGGACTCCGACGTGCGCGAGGTCTTGCTGTATCGGTCCGGGCTGGTCACCGCCGCCGCGTCCTTCGTGGCCGCCGCCTCGGCCGCGTTCCTCCCCGAGGGGAACGCCGCCGGCGACGCCATCAGGCAAGGCGCCGACCTCCTCTACGCCACCGGAGCGGCGGGGCTGGGGCTTTCGCTCGTGCTGATTCACATCTACGTCACTCCGATCAAGCGGTTCCTCCAGGCGCTGTGGGTGGTCGGAGTCGTCGGGTCCATCGGGACGTACGTCGCCGGCGCGCAGCCGCTCGACGAGAGCCTCGTCGGCTACGTTCTCGACCACCCGGCTGCGCTGTGGTTCGTCGGCCCTACGTTTGCGGCGCTCACAGGCCTCGTCTTCAAGGAAGGTCTCTGCTATGGAAAACTGGAAGCTGGTATTTTAACTTTTGTTATCCCTGGCCTTCTTCTTGGACACCTGTCTGGTCTAATGGACAACGGAACAAAAGCCGGCCTTTTAGGAGTTTGGATGGTTCTCTTCACTGTATTCGCAGCAAGAAAATTCCAGCAGCCCATCAAGGATGACATTGGTGACAAATCAGTTTTTATGTTCAACGCCCTCCCTGAAGAAGAAAAGAAGGCCTTGATACAGAAGCTCGAGATGCAAACTGAGACCGATGGCTGAAACCAGCACAGCAGCTTTAGTACGTGTACGTCCAAGGAAGTATATGCAATTGATGTACATGTATGGTAGTTTCACAGATACCGGCACATGTCAGTAAGAGTAGTAACTCAGTTTATACATAGGAATGAGAATGTACTAGCTAGAGTAATTGCGATGTGTAGTTGCAAATCAGATATAAATATATATACATGTTGATGGATCTCCTCTGGGTATCTGATCAGAGAGGGGTCTTACCCTGTACAACTGTCTGTTCTCATGTGATTATCTTCTCTGTGCCTTACGGTGTATATACGTGAATTTGGTTAAAAAAAAAAAAANAAAAA]

[+] EMBL AK067191             [AAAAATTATCATCCCGCCGCGACGCCATGGCCGCTACCGTCCTCCTCCTCTCGCCGCGCCTCGCCGTCGCGCCTCTACGGCCGCACCCCAGGCTGGGGCTGACCCCCACCGCAGTCGGACGGCCTCTTCCCCTCGCCTACCTCGGCCGCCGCGCCGCCGCCGCGAGGCAGCTCGCCGCCGTCGCCGACCGGAACGTCTACAACGGCGTCTACGGCCCATGGACCGTCGAGGACTCCGACGTGCGCGAGGTCTTGCTGTATCGGTCCGGGCTGGTCACCGCCGCCGCGTCCTTCGTGGCCGCCGCCTCGGCCGCGTTCCTCCCCGAGGGGAACGCCGCCGGCGACGCCATCAGGCAAGGCGCCGACCTCCTCTACGCCACCGGAGCGGCGGGGCTGGGGCTTTCGCTCGTGCTGATTCACATCTACGTCACTCCGATCAAGCGGTTCCTCCAGGCGCTGTGGGTGGTCGGAGTCGTCGGGTCCATCGGGACGTACGTCGCCGGCGCGCAGCCGCTCGACGAGAGCCTCGTCGGCTACGTTCTCGACCACCCGGCTGCGCTGTGGTTCGTCGGCCCTACGTTTGCGGCGCTCACAGGCCTCGTCTTCAAGGAAGGTCTCTGCTATGGAAAACTGGAAGCTGGTATTTTAACTTTTGTTATCCCTGGCCTTCTTCTTGGACACCTGTCTGGTCTAATGGACAACGGAACAAAAGCCGGCCTTTTAGGAGTTTGGATGGTTCTCTTCACTGTATTCGCAGCAAGAAAATTCCAGCAGCCCATCAAGGATGACATTGGTGACAAATCAGTTTTTATGTTCAACGCCCTCCCTGAAGAAGAAAAGAAGGCCTTGATACAGAAGCTCGAGATGCAAACTGAGACCGATGGCTGAAACCAGCACAGCAGCTTTAGTACGTGTACGTCCAAGGAAGTATATGCAATTGATGTACATGTATGGTAGTTTCACAGATACCGGCACATGTCAGTAAGAGTAGTAACTCAGTTTATACATAGGAATGAGAATGTACTAGCTAGAGTAATTGCGATGTGTAGTTGCAAATCAGATATAAATATATATACATGTTGATGGATCTCCTCTGGGTATCTGATCAGAGAGGGGTCTTACCCTGTACAACTGTCTGTTCTCATGTGATTATCTTCTCTGTGCCTTACGGTGTATATACGT                             ]
[+] EMBL AU162718             [                       GCCATGGCCGCTACCGTCCTCCTCCTCTCGCCGCGCCTCGCCGTCGCGCCTCTACGGCCGCACCCCAGGCTGGGGCTGACCCCCACCGCAGTCGGACGGCCTCTTCCCCTCGCCTACNTCGGCCGCCGCGCCGCCGCCGCGAGGCAGCTCGCCGCCGTCGCCGACCGGAACGTCTACAACGGCGTCTACGGCCCATGGACCGTCGAGGACTCCGACGTGCGCGAGGTCTTGCTGTATCGGTCCGGGCTGGTCACCGCCGCCGCGTCCTTCGTNGCCGCCGCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU056774             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCCAGCAGCCCATCAAGGATGACATTGGTGACAAATCAGTTTTTATGTTCAACGCCCTCCCTGAAGAAGAAAAGAAGGCCTTGATACAGAAGCTCGAGATGCAAACTGAGACCGATGGCTGAAACCAGCACAGCAGCTTTAGTACGTGTACGTCCAAGGAAGTATATGCAATTGATGTACATGTATGGTAGTTTCACAGATACCGGCACATGTCAGTAAGAGTAGTAACTCAGTTTATACATAGGAATGAGAATGTACTAGCTAGAGTAATTGCGATGTGTAGTTGCAAATCAGATATAAATATATATACATGTTGATGGATCTCCTCTGGGTATCTGATCAGAGAGGGGTCTTACCCTGTACAACTGTCTGTTCTCATGTGATTATCTTCTCTGTG CTTACGGTGTATATACGTGAATTTGGTTAAAAAAAAAAAAANAAAAA]


>consensus_5165#0 AAAAATTATCATCCCGCCGCGACGCCATGGCCGCTACCGTCCTCCTCCTCTCGCCGCGCC TCGCCGTCGCGCCTCTACGGCCGCACCCCAGGCTGGGGCTGACCCCCACCGCAGTCGGAC GGCCTCTTCCCCTCGCCTACCTCGGCCGCCGCGCCGCCGCCGCGAGGCAGCTCGCCGCCG TCGCCGACCGGAACGTCTACAACGGCGTCTACGGCCCATGGACCGTCGAGGACTCCGACG TGCGCGAGGTCTTGCTGTATCGGTCCGGGCTGGTCACCGCCGCCGCGTCCTTCGTGGCCG CCGCCTCGGCCGCGTTCCTCCCCGAGGGGAACGCCGCCGGCGACGCCATCAGGCAAGGCG CCGACCTCCTCTACGCCACCGGAGCGGCGGGGCTGGGGCTTTCGCTCGTGCTGATTCACA TCTACGTCACTCCGATCAAGCGGTTCCTCCAGGCGCTGTGGGTGGTCGGAGTCGTCGGGT CCATCGGGACGTACGTCGCCGGCGCGCAGCCGCTCGACGAGAGCCTCGTCGGCTACGTTC TCGACCACCCGGCTGCGCTGTGGTTCGTCGGCCCTACGTTTGCGGCGCTCACAGGCCTCG TCTTCAAGGAAGGTCTCTGCTATGGAAAACTGGAAGCTGGTATTTTAACTTTTGTTATCC CTGGCCTTCTTCTTGGACACCTGTCTGGTCTAATGGACAACGGAACAAAAGCCGGCCTTT TAGGAGTTTGGATGGTTCTCTTCACTGTATTCGCAGCAAGAAAATTCCAGCAGCCCATCA AGGATGACATTGGTGACAAATCAGTTTTTATGTTCAACGCCCTCCCTGAAGAAGAAAAGA AGGCCTTGATACAGAAGCTCGAGATGCAAACTGAGACCGATGGCTGAAACCAGCACAGCA GCTTTAGTACGTGTACGTCCAAGGAAGTATATGCAATTGATGTACATGTATGGTAGTTTC ACAGATACCGGCACATGTCAGTAAGAGTAGTAACTCAGTTTATACATAGGAATGAGAATG TACTAGCTAGAGTAATTGCGATGTGTAGTTGCAAATCAGATATAAATATATATACATGTT GATGGATCTCCTCTGGGTATCTGATCAGAGAGGGGTCTTACCCTGTACAACTGTCTGTTC TCATGTGATTATCTTCTCTGTGCCTTACGGTGTATATACGTGAATTTGGTTAAAAAAAAA AAAANAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)