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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5167#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1227 fasta sequence
[AAACCAGACACTGCTGCTGCGTGTCTGTGTGCCGCGCCACCTATGCACCTCGCGCGCGCGGCAAGCGCTCCTCCTGCCGGCGCCTTCCCCTGTCCCTCGCTTGCCTCCAGCTGCAGCAGAGGAGCGCGTGTGCGTGTGTGTACGGTGCATGAGCTTTCCGCTGGTGTGCTTCTGCCGCCAGATCCCGCGGCCCATCGTCGCGCTGTTCAAGCTGCTCCAGGCCGTGGCGCTGGCCTTCGTGCTGATACTCTGCTTCCTCGGCCTCTACGAGTTCCCCTACACCGTCGAGGACCACGCGCCGCTCATCCACGGCCGCCGCCGCGATCCCCTCGGCGACGACGGCCTGCAGCCCGAGGCGGTGAAGCGGGGCCTCCCGCTGGTCGAGTACATGCAACTCGCCGACCTGTCGGCGGATTGCCACGACGGCGAGAGCGGCTACCCGGCCACGTGCAGGGTGTGCCTGGAGAGGTTGGAGGCGACGGACGAGGTGAGGCGGCTGGGCAACTGCACCCACGCCTTCCACATCGGCTGCATCGACCGGTGGATCGACCTGGGAGAGGTGACGTGCCCGCTCTGTCGGTCCCACCTGCTGCCACGTCAACGAAGGGGCCTGCTTGGCAGTAGGCGGTTCGGCTAGATTGTCTCGCGGCACGGCGCCATGGGGGCAGTTTCGTCATTTCAGGCTGTACATCTCGCCATTGTTGCTGGATGGGTGCAGGCCAACCGCAGACTGATTCCGATCAGGACGACTAACCACCAAGCAGTACCGGTGCTAATCAATTGATAGTTGTGCTCACGCGAAAATTAATGGCATTTTGGAATTCCACGGGTGTACTTTAACGCATAGTTGCATCCGACGAGCTAGGTAACGTGCACCCGTTTAGAGCGAGTACAATGGCAGGCTACAAGTAAGCTATAAGCATACGTGGAAGAGAGAAGAGATAAGAGAGAAGGAAAACAGGCTATATATTTACAGCCAGCTTCAGCACGGAATCTAATACATTGTGCGTGTATGAGATGTAGGATCATATATTAATAGTGTACTACTCCCTCCATTTCACAATATAAGTCATTCTAGCATTTTTCGCATTCATATTGATGTTAATGAATATAAATGTGGAAAATGTTAGAATGATTTACATTGTGAAACGGAGAAAGTATATGTTTATAGATAACTATTGTATAAATGAACTATTAGATTATCTATAAATAAATTGGAGCTAGTAG]
[+] EMBL AK067005 [AAACCAGACACTGCTGCTGCGTGTCTGTGTGCCGCGCCACCTATGCACCTCGCGCGCGCGGCAAGCGCTCCTCCTGCCGGCGCCTTCCCCTGTCCCTCGCTTGCCTCCAGCTGCAGCAGAGGAGCGCGTGTGCGTGTGTGTACGGTGCATGAGCTTTCCGCTGGTGTGCTTCTGCCGCCAGATCCCGCGGCCCATCGTCGCGCTGTTCAAGCTGCTCCAGGCCGTGGCGCTGGCCTTCGTGCTGATACTCTGCTTCCTCGGCCTCTACGAGTTCCCCTACACCGTCGAGGACCACGCGCCGCTCATCCACGGCCGCCGCCGCGATCCCCTCGGCGACGACGGCCTGCAGCCCGAGGCGGTGAAGCGGGGCCTCCCGCTGGTCGAGTACATGCAACTCGCCGACCTGTCGGCGGATTGCCACGACGGCGAGAGCGGCTACCCGGCCACGTGCAGGGTGTGCCTGGAGAGGTTGGAGGCGACGGACGAGGTGAGGCGGCTGGGCAACTGCACCCACGCCTTCCACATCGGCTGCATCGACCGGTGGATCGACCTGGGAGAGGTGACGTGCCCGCTCTGTCGGTCCCACCTGCTGCCACGTCAACGAAGGGGCCTGCTTGGCAGTAGGCGGTTCGGCTAGATTGTCTCGCGGCACGGCGCCATGGGGGCAGTTTCGTCATTTCAGGCTGTACATCTCGCCATTGTTGCTGGATGGGTGCAGGCCAACCGCAGACTGATTCCGATCAGGACGACTAACCACCAAGCAGTACCGGTGCTAATCAATTGATAGTTGTGCTCACGCGAAAATTAATGGCATTTTGGAATTCCACGGGTGTACTTTAACGCATAGTTGCATCCGACGAGCTAGGTAACGTGCACCCGTTTAGAGCGAGTACAATGGCAGGCTACAAGTAAGCTATAAGCATACGTGGAAGAGAGAAGAGATAAGAGAGAAGGAAAACAGGCTATATATTTACAGCCAGCTTCAGCACGGAATCTAATACATTGTGCGTGTATGAGATGTAGGATCATATATTAATAGTGTACTACTCCCTCCATTTCACAATATAAG ]
[-] EMBL CB663407 [ TGCCTGGAGAGGTTGGAGGCGACGGACGAGGTGAGGCGGCTGGGCAACTGCACCCACGCCTTCCACATCGGCTGCATCGACCGGTGGATCGACCTGGGAGAGGTGACGTGCCCGCTCTGTCGGTCCCACCTGCTGCCACGTCAACGAAGGGGCCTGCTTGGCAGTAGGCGGTTCGGCTAGATTGTCTCGCGGCACGGCGCCATGGGGGCAGTTTCGTCATTTCAGGCTGTACATCTCGCCATTGTTGCTGGATGGGTGCAGGCCAACCGCAGACTGATTCCGATCAGGACGACTAACCACCAAGCAGTACCGGTGCTAATCAATTGATAGTTGTGCTCACGCGAAAATTAATGGCATTTTGGAATTCCACGGGTGTACTTTAACGCATAGTTGCATCCGACGAGCTAGGTAACGTGCACCCGTTTAGAGCGAGTACAATGGCAGGCTACAAGTAAGCTATAAGCATACGTGGAAGAGAGAAGAGATAAGAGAGAAGGAAAACAGGCTATATATTTACAGCCAGCTTCAGCACGGAATCTAATACATTGTGCGTGTATGAGATGTAGGATCATATATTAATAGTGTACTACTCCCTCCATTTCACAATATAAGTCATTCTAGCATTTTTCGCATTCATATTGATGTTAATGAATATAAATGTGGAAAATGTTAGAATGATTTACATTGTGAAACGGAGAAAGTATATGTTTATAGATAACTATTGTATAAATGAACTATTAGATTATCTATAAATAAATTGGAGCTAGTAG]
consensusID : consensus_5167#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[CATACTGTGGAAGAGATGAAGAGATAAGAGAGAAGGAAAATGGGCTATATATTTGACACCACTCAGCACGGAATTTAATACATTTGCGTTTATGAATGTAGGACCATATATTAATAGTTTACTACTCCCGTCCAATTTCACAATATAAGTTATTCTAGCATTTTTCGCATTCATATTTGATGTTAATAAATCTAGATAGATATATATTTTAGATTCATTAACATCAATATGAATGTGGGAAATGTTAGAATGATTTACATTTGTGAAACGGAGGAAGTATATGTTTATAGATAACTATTGTATAAATGAACTATTAGATTATCTATAAATAAATTGGAGTTAGTAGTTGGCTA]
[+] EMBL BI813452 [CATACTGTGGAAGAGATGAAGAGATAAGAGAGAAGGAAAATGGGCTATATATTTGACACCACTCAGCACGGAATTTAATACATTTGCGTTTATGAATGTAGGACCATATATTAATAGTTTACTACTCCCGTCCAATTTCACAATATAAGTTATTCTAGCATTTTTCGCATTCATATTTGATGTTAATAAATCTAGATAGATATATATTTTAGATTCATTAACATCAATATGAATGTGGGAAATGTTAGAATGATTTACATTTGTGAAACGGAGGAAGTATATGTTTATAGATAACTATTGTATAAATGAACTATTAGATTATCTATAAATAAATTGGAGTTAGTAGTTGGCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5167#0 AAACCAGACACTGCTGCTGCGTGTCTGTGTGCCGCGCCACCTATGCACCTCGCGCGCGCG 60
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 GCAAGCGCTCCTCCTGCCGGCGCCTTCCCCTGTCCCTCGCTTGCCTCCAGCTGCAGCAGA 120
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 GGAGCGCGTGTGCGTGTGTGTACGGTGCATGAGCTTTCCGCTGGTGTGCTTCTGCCGCCA 180
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 GATCCCGCGGCCCATCGTCGCGCTGTTCAAGCTGCTCCAGGCCGTGGCGCTGGCCTTCGT 240
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 GCTGATACTCTGCTTCCTCGGCCTCTACGAGTTCCCCTACACCGTCGAGGACCACGCGCC 300
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 GCTCATCCACGGCCGCCGCCGCGATCCCCTCGGCGACGACGGCCTGCAGCCCGAGGCGGT 360
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 GAAGCGGGGCCTCCCGCTGGTCGAGTACATGCAACTCGCCGACCTGTCGGCGGATTGCCA 420
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 CGACGGCGAGAGCGGCTACCCGGCCACGTGCAGGGTGTGCCTGGAGAGGTTGGAGGCGAC 480
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 GGACGAGGTGAGGCGGCTGGGCAACTGCACCCACGCCTTCCACATCGGCTGCATCGACCG 540
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 GTGGATCGACCTGGGAGAGGTGACGTGCCCGCTCTGTCGGTCCCACCTGCTGCCACGTCA 600
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 ACGAAGGGGCCTGCTTGGCAGTAGGCGGTTCGGCTAGATTGTCTCGCGGCACGGCGCCAT 660
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 GGGGGCAGTTTCGTCATTTCAGGCTGTACATCTCGCCATTGTTGCTGGATGGGTGCAGGC 720
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 CAACCGCAGACTGATTCCGATCAGGACGACTAACCACCAAGCAGTACCGGTGCTAATCAA 780
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 TTGATAGTTGTGCTCACGCGAAAATTAATGGCATTTTGGAATTCCACGGGTGTACTTTAA 840
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 CGCATAGTTGCATCCGACGAGCTAGGTAACGTGCACCCGTTTAGAGCGAGTACAATGGCA 900
consensus_5167#1 ------------------------------------------------------------
consensus_5167#0 GGCTACAAGTAAGCTATAAGCATAC-GTGGAAGAGA-GAAGAGATAAGAGAGAAGGAAAA 958
consensus_5167#1 --------------------CATACTGTGGAAGAGATGAAGAGATAAGAGAGAAGGAAAA 40
***** ********** ***********************
consensus_5167#0 CAGGCTATATATTTACAGCCAGCTTCAGCACGGAATCTAATACATTGTGCGTGTATGAGA 1018
consensus_5167#1 TGGGCTATATATTTGACACCA--CTCAGCACGGAATTTAATACATT-TGCGTTTATGA-A 96
************ *** ************ ********* ***** ***** *
consensus_5167#0 TGTAGGATCATATATTAATAGTGTACTACTCCCTCC--ATTTCACAATATAAGTCATTCT 1076
consensus_5167#1 TGTAGGACCATATATTAATAGTTTACTACTCCCGTCCAATTTCACAATATAAGTTATTCT 156
******* ************** ********** * **************** *****
consensus_5167#0 AGCATTTTTCGCATTCATATT-GATGTTAATGAAT------------------------- 1110
consensus_5167#1 AGCATTTTTCGCATTCATATTTGATGTTAATAAATCTAGATAGATATATATTTTAGATTC 216
********************* ********* ***
consensus_5167#0 ------------ATAAATGTGGAAAATGTTAGAATGATTTACATT-GTGAAACGGAGAAA 1157
consensus_5167#1 ATTAACATCAATATGAATGTGGGAAATGTTAGAATGATTTACATTTGTGAAACGGAGGAA 276
** ******* ********************** *********** **
consensus_5167#0 GTATATGTTTATAGATAACTATTGTATAAATGAACTATTAGATTATCTATAAATAAATTG 1217
consensus_5167#1 GTATATGTTTATAGATAACTATTGTATAAATGAACTATTAGATTATCTATAAATAAATTG 336
************************************************************
consensus_5167#0 GAGCTAGTAG------- 1227
consensus_5167#1 GAGTTAGTAGTTGGCTA 353
*** ******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||