These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1165 fasta sequence [ATCAAAATGTTTCCTTTGATTATTGCTAGATCATAAAGTTTAGGAAATCACAACATTAGTATGTCCCGACCTTGCACATTCCATGAAGCATCCCAACAACAAAAAAAACCCCACCAATTCAACCATCATCCAGCAAATCATTGTTTAAAAACATTCTGGCATTTTAAATGTATGTAAACTACAACGAGCAAAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCATCATCCAGGAAATCATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAGCTCAAACGAGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAAGAAATAAGGATGGGATCATTGATCATCCTGCACTTCCCTGTGGCCTCCTCTGGCACCTTACACTTCTCAACAATGATCCTCTGCAATCTGGAGCTGCCTCCAGCTAGGGCTGCCACGCCTGCTGGAGTTACCCGAGAGCAGCGGAACA-CCCCACACGCCTCCAGCTGCAAGCATCCTCTTGCAATATCTTCTAGGCCAACGTCGCTAATCGCATCACAGCGAAGCATCATGAGATGTTTCAATTTTCGGAATCCTTCACCAACCTTTGCTAGTGTGGTGTCACCAATTTTCTTGGTATCACTTATATTCAGATGGACTAGATCATGGCACTCTCTTATAATGGTAGTAAGCCCATAATCAGTAATTTGATTGCACCCACATATATCTAACTTCTCAAGGAAACGACATTGATCAACCGTAGCAAGCCCGGTATCATTTAACCTCCCAAGACCATGGAGGGTCAACTCTCTAAGTTCTTTACAATTCTCACCTACAGATAGTAATGCTTCATCCCCGATCTGAGGACAAGAGATGATAGAAAGCTCTCTCAAGTTCTTGCAGCCTTGAGCTATGTGAGATATGGCCTCATCGCTTATTTTACAACAGTTGGCCAAACAAACAGACTTGAGAAGGAAGCAACATTGACCAAATCCAAGAAATGCATTATTGTCAATCCACAGACTGTTTAGAGTGAGCCCTCGAAGATTTATGCATCGCTGTCCAATATGCTCCAATGCAGCAGTTTCCATAATATGGCACATGTTAATGTCCATGTGTTGTAGCATTCTACAGTTCTGGGAAACACG] [+] EMBL CB632966 [ATCAAAATGTTTCCTTTGATTATTGCTAGATCATAAAGTTTAGGAAATCACAACATTAGTATGTCCCGACCTTGCACATTCCATGAAGCATCCCAACAACAAAAAAAACCCCACCAATTCAACCATCATCCAGCAAATCATTGTTTAAAAACATTCTGGCATTTTAAATGTATGTAAACTACAACGAGCAAAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCATCATCCAGGAAATCATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAGCTCAAACGAGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAAGAAATAAGGATGGGATCATTGATCATCCTGCACTTCCCTGTGGCCTCCTCTGGCACCTTACACTTCTCAACAATGATCCTCTGCAATCTGGAGCTGCCTCCAGCTAGGGCTGCCACGCCTGCTGGAGTTACCCGAGAGCAGCGGAACA CCCCACACGCCTCCAGCTGCAAGCATCCTCTTGCAATATCTTCTAGGCCAACGTCGCTAATCGCATCACAGCGAAGCATCATGAGATGTTTCAATTTTCGGAATCCTTCACCAACCTTTGCTAGTGTGGTGTCACCAATTTTCTTGGTATCACTTATATTCAGATGGACTAGATCATGGCACTCTCTTATAATGGTAGTAAGCCCATAATCAGTAATTTGATTGCACCCACATATATCTAACTTCTCAAGGAAACGACATTGATCAACCGTAGCAAGCCCGGTATCATT ] [-] EMBL CA766812 [ GATCATTGATCATCCTGCACTTCCCTGTGGCNTCCTCTGGCNCCTTACACTTTTCANCAATGATCCTNTGCAATCTGAAGCTGCCTCCAGCTAGGGCTGCCACGCCTGCTGNAGTTACNTGAGAGCAGCGGAACACCCCCACACGCCTCCAGCTGCAAGCATCCTCTTGCAATATCTGCTAGGCCAACGTCGCTAATCGCATCACAGCGAAGCATCATGAGATGTTTCAATTTTCGGAATCCTTCACCAACCTTTGCTAGTGTGGTGTCACCAATTTTCTTGGTATCACTTATATTCAGATGGACTACATCATGGCACTCTCTTATAATGGTAGTAAGCCCATAATCAGTAATTTGATTGCACCCACATATATCTAACTTCTCAAGGAAACGACATTGATCAACCGTAGCAAGCCCGGTATCATTTAACCTCCCAAGACCATGGAGGGTCAACTCTCTAAGTTCTTTACAATTCTCACCTACAGATAGTAATGCTTCATCCCCGATCTGAGGACAAGAGATGATAGAAAGCTCTCTCAAGTTCTTGCAGCCTTGAGCTATGTGAGATATGGCCTCATCGCTTATTTTACAACAGTTGGCCAAACAAACAGACTTGAGAAGGAAGCAACATTGACCAAATCCAAGAAATGCATTATTGTCAATCCACAGACTGTTTAGAGTGAGCCCTCGAAGATTTATGCATCGCTGTCCAATATGCTCCAATGCAGCAGTTTCCATAATATGGCACATGTTAATGTCCATGTGTTGTAGCATTCTACAGTTCTGGGAAACACG] consensusID : consensus_5176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [CCCNCGGGGGCGGNCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAAAACATTCTGACATTTTAAATGTACGTAAACTACAACGAGCAGAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCATCATCCAGGAAATATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAAGCTCAAACGAGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAAGAAATAAGGATGGGATCATTGATCATCCT] [-] EMBL CB097082 [CCCNCGGGGGCGGNCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAAAACATTCTGACATTTTAAATGTACGTAAACTACAACGAGCAGAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCATCATCCAGGAAATATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAAGCTCAAACGAGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAAGAAATAAGGATGGGATCATTGATCATCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5176#0 ATCAAAATGTTTCCTTTGATTATTGCTAGATCATAAAGTTTAGGAAATCACAACATTAGT 60 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 ATGTCCCGACCTTGCACATTCCATGAAGCATCCCAACAACAAAAAAAACCCCACCAATTC 120 consensus_5176#1 --------------------------------CCCNCGGGGGCGGNCGCTTTTTTTTTTT 28 ** * * ** consensus_5176#0 AACCATCATCCAGCAAATCATTGTTTAAAAACATTCTGGCATTTTAAATGTATGTAAACT 180 consensus_5176#1 TTTTTTTTTTTTTTTTTTTTTTTGTTTAAAACATTCTGACATTTTAAATGTACGTAAACT 88 * * * ** ** *********** ************* ******* consensus_5176#0 ACAACGAGCAAAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCAT 240 consensus_5176#1 ACAACGAGCAGAGAGTTTCCTTAAAACATCCCAACAATAAAAACCCACCAGTTCAACCAT 148 ********** ************************************************* consensus_5176#0 CATCCAGGAAATCATTGTTTAAAATATTCTCACATTTTAAATGTATGTAA-GCTCAAACG 299 consensus_5176#1 CATCCAGGAAAT-ATTGTTTAAAATATTCTCACATTTTAAATGTATGTAAAGCTCAAACG 207 ************ ************************************* ********* consensus_5176#0 AGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAA 359 consensus_5176#1 AGCAAAGGATTTCCTTCACAGCTATGCCCGGAAGACATCAATTTCACGTCTTAATAATAA 267 ************************************************************ consensus_5176#0 GAAATAAGGATGGGATCATTGATCATCCTGCACTTCCCTGTGGCCTCCTCTGGCACCTTA 419 consensus_5176#1 GAAATAAGGATGGGATCATTGATCATCCT------------------------------- 296 ***************************** consensus_5176#0 CACTTCTCAACAATGATCCTCTGCAATCTGGAGCTGCCTCCAGCTAGGGCTGCCACGCCT 479 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 GCTGGAGTTACCCGAGAGCAGCGGAACACCCCACACGCCTCCAGCTGCAAGCATCCTCTT 539 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 GCAATATCTTCTAGGCCAACGTCGCTAATCGCATCACAGCGAAGCATCATGAGATGTTTC 599 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 AATTTTCGGAATCCTTCACCAACCTTTGCTAGTGTGGTGTCACCAATTTTCTTGGTATCA 659 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 CTTATATTCAGATGGACTAGATCATGGCACTCTCTTATAATGGTAGTAAGCCCATAATCA 719 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 GTAATTTGATTGCACCCACATATATCTAACTTCTCAAGGAAACGACATTGATCAACCGTA 779 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 GCAAGCCCGGTATCATTTAACCTCCCAAGACCATGGAGGGTCAACTCTCTAAGTTCTTTA 839 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 CAATTCTCACCTACAGATAGTAATGCTTCATCCCCGATCTGAGGACAAGAGATGATAGAA 899 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 AGCTCTCTCAAGTTCTTGCAGCCTTGAGCTATGTGAGATATGGCCTCATCGCTTATTTTA 959 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 CAACAGTTGGCCAAACAAACAGACTTGAGAAGGAAGCAACATTGACCAAATCCAAGAAAT 1019 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 GCATTATTGTCAATCCACAGACTGTTTAGAGTGAGCCCTCGAAGATTTATGCATCGCTGT 1079 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 CCAATATGCTCCAATGCAGCAGTTTCCATAATATGGCACATGTTAATGTCCATGTGTTGT 1139 consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 AGCATTCTACAGTTCTGGGAAACACG 1165 consensus_5176#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||