These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [GTTGGGAGCTATGTCACCAACTTGTTCCAAGACAGGCAAATTTTAGTGGCATCGGAAATCATGGTCCTGATCGGCATAGCCATGAGCTTCCGTTTCACCTCTCACTACTCCGTCCCGCAATACGTCTCCTCGGCTCTCATCACGTTCGTCTTCGCTGAGGTGCTCGAAGGAGTGAACCTGTCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTCCTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCGGGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGCGTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTCTCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTATGTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTACTGATCAAAAAAA] [+] EMBL AU030644 [GTTGGGAGCTATGTCACCAACTTGTTCCAAGACAGGCAAATTTTAGTGGCATCGGAAATCATGGTCCTGATCGGCATAGCCATGAGCTTCCGTTTCACCTCTCACTACTCCGTCCCGCAATACGTCTCCTCGGCTCTCATCACGTTCGTCTTCGCTGAGGTGCTCGAAGGAGTGAACCTGTCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTCCTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCGGGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGCGTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTCTCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTATGTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTACTGATCAAAAAAA] consensusID : consensus_5188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [GACCCTGTGAACAAAACGATGCAGGAGTGAACCTGTCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTCCTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCGGGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGCGTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTCTCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTATGTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTACTGATCAAAAA] [-] EMBL CF315760 [GACCCTGTGAACAAAACGATGCAGGAGTGAACCTGTCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTCCTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCGGGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGCGTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTCTCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTATGTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTACTGATCAAAAA] consensusID : consensus_5188#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [CGAGCCGTGCCNAATTCGGCACGAGCACNNTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTANGTTATGTTTGTAGTAACAGTTACTAAGTTAACAGATGATGTAAGACATGTTCAATAAANTCTACTGATCAAATGCTCCAAAAGCCTCTTGGACAATCCTGCTTGCACCGGACCAGCNANTTCCAGGGCAACGGCAAGANCATAAAAAAAATGTNTGCTCAGCGGNCAANCAAAAGTTAATTGGTGCGGATCAAANTGAAATGAGGTGATCACCGGTGGTTTTTGCCGTT] [+] EMBL BE228801 [CGAGCCGTGCCNAATTCGGCACGAGCACNNTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTANGTTATGTTTGTAGTAACAGTTACTAAGTTAACAGATGATGTAAGACATGTTCAATAAANTCTACTGATCAAATGCTCCAAAAGCCTCTTGGACAATCCTGCTTGCACCGGACCAGCNANTTCCAGGGCAACGGCAAGANCATAAAAAAAATGTNTGCTCAGCGGNCAANCAAAAGTTAATTGGTGCGGATCAAANTGAAATGAGGTGATCACCGGTGGTTTTTGCCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5188#0 GTTGGGAGCTATGTCACCAACTTGTTCCAAGACAGGCAAATTTTAGTGGCATCGGAAATC 60 consensus_5188#1 ------------------------------------------------------------ consensus_5188#2 ------------------------------------------------------------ consensus_5188#0 ATGGTCCTGATCGGCATAGCCATGAGCTTCCGTTTCACCTCTCACTACTCCGTCCCGCAA 120 consensus_5188#1 ------------------------------------------------------------ consensus_5188#2 ------------------------------------------------------------ consensus_5188#0 TACGTCTCCTCGGCTCTCATCACGTTCGTCTTCGCTGAGGTGCTCGAAGGAGTGAACCTG 180 consensus_5188#1 -----------------------GACCCTGTGAAC-AAAACGAT-GCAGGAGTGAACCTG 35 consensus_5188#2 ----------------------------------------------------CGAGCCGT 8 ** ** consensus_5188#0 TCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTC 240 consensus_5188#1 TCCCTCCTTTCCCGGGTGATGTCGTCGAGGCTCTCGCGCGGAACCTACAACGGCGGGCTC 95 consensus_5188#2 GCCNAATTCGGCACGAGCACNNTTCCTGGCCACTTGGGTGGCCTGTAAAATGTTAGGCCG 68 ** * * * * * * * ** * * ** ** ** * *** consensus_5188#0 CTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCG 300 consensus_5188#1 CTCTCGACGGAAGCCGGCACTTTGGCTCGCGTCGCGGCGGACATGACGATCACGGCGGCG 155 consensus_5188#2 ATG-CAGCTAATGCTGGT-CTCTAATTGTCATC-TGTGGAAGATTANG-TTATGTTTGTA 124 * * * * ** ** ** * * * ** * * * ** * * * * * * consensus_5188#0 GGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGC 360 consensus_5188#1 GGTTACCTTGGCCAGAACAGCCTCCTGAATGTAACCCTGCTTCCGTCCTTCGTGATCTGC 215 consensus_5188#2 G-TAACAGTTACTAAGTTAACAGAT--GATGTAAGACA-----TGTTCAATAAANTCTAC 176 * * ** * * * * * ****** * ** * *** * consensus_5188#0 GTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTC 420 consensus_5188#1 GTAGCTTCCATCGTCGCGACATTTTGCACCTATAACTCCCTGTACTGAGAATCTGTTCTC 275 consensus_5188#2 TGATCAAATGCTCCAAAAGCCTCTTGGAC--AATCCTGCTTGCACCGG--ACCAGCNANT 232 * * * * *** ** * ** * ** ** * * * * consensus_5188#0 TCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAA 480 consensus_5188#1 TCCGTCTGTATGTACAAGAAGCAGTTGACACAGTTCCTGGCCACTTGGGTGGCCTGTAAA 335 consensus_5188#2 TCCAGG-GCAACGGCAAGANC--ATAAAAAAAATGTNTGCTCA-----GCGGNCAANCAA 284 *** * * ***** * * * * * ** ** * ** * ** consensus_5188#0 ATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTAT 540 consensus_5188#1 ATGTTAGGCCGATGCAGCTAATGCTGGTCTCTAATTGTCATCTGTGGAAGATTAGGTTAT 395 consensus_5188#2 AAGTTAA-TTGGTGCGGATCAAANTGAAATGAGGTGATCACCGGTGGTTTTTGCCGTT-- 341 * **** * *** * * * ** * * *** * **** * *** consensus_5188#0 GTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTAC 600 consensus_5188#1 GTTTGTAGTAGCAGTTACTAAGTTAACAGATGATGTAAGAGCATGTTCAATAAACTCTAC 455 consensus_5188#2 ------------------------------------------------------------ consensus_5188#0 TGATCAAAAAAA 612 consensus_5188#1 TGATCAAAAA-- 465 consensus_5188#2 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||