cluster # 5190

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Oryza sativa
cluster # 5190 cluster # 5190 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5190#0 length = 603 sequences # 1

consensus_5190#1 length = 577 sequences # 1
consensus_5190#2 length = 466 sequences # 1

consensusID : consensus_5190#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [AAGAAGCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTCAAGGAAGAGCTAATTGCCAAGGCTNCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTNTTTACANGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN]

[+] EMBL AU030670             [AAGAAGCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTCAAGGAAGAGCTAATTGCCAAGGCTNCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTNTTTACANGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN]




>consensus_5190#0
AAGAAGCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTC
AAGGAAGAGCTAATTGCCAAGGCTNCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAG
CTGGACGACAACCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGA
GCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGT
GATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATACT
TAAGGCTTCGTCTTGCTGGCGTGAGTGCCCCAAGTTTTAGTTGTGAAGTGATACTTAAGG
CTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTG
TGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTT
TCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGC
CCTAAATGTATTTTACTGCTNTTTACANGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAN

consensusID : consensus_5190#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [GCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTCAAGGAAGAGCTAATTGCCAAGGCTGCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTC]

[+] EMBL AK062786             [GCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTCAAGGAAGAGCTAATTGCCAAGGCTGCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTC]




>consensus_5190#1
GCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTCAAGGA
AGAGCTAATTGCCAAGGCTGCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGA
CGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTG
CAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATA
ACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATACTTAAG
GCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCG
TCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAA
CCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCG
TGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAA
ATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTC

consensusID : consensus_5190#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [GCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTTTGTTACTGCTCAAAAAAAAAAA]

[+] EMBL CA756779             [GCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTTTGTTACTGCTCAAAAAAAAAAA]




>consensus_5190#2
GCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAGCTGGACGACAACGCCGGTGGCGTC
GACTGCTGATCGACGATGCGGATGGGGGGCGTGAGGAGCTGCAAAACCCAATGCCATATG
AGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAGTGATAACTAAGGCTTCGTCTTGCT
GGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATACTTAAGGCTTCGTCTTGCTGGCGTG
AGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTTGTGAAACCATGGTTTCTCT
GAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTTTTCTCGTGGTCGTTTTGTG
TCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAGCCCTAAATGTATTTTACTG
CTATTTACAAGTAATCGAGTTCTTTGTTACTGCTCAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5190#0      AAGAAGCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTC 60
consensus_5190#1      -----GCCGACTGTCCAGGAACTTAACGCCACGAGCATGAGGAAGCTCAAAACCATGCTC 55
consensus_5190#2      ------------------------------------------------------------
                                                                                  

consensus_5190#0      AAGGAAGAGCTAATTGCCAAGGCTNCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAG 120
consensus_5190#1      AAGGAAGAGCTAATTGCCAAGGCTGCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAG 115
consensus_5190#2      ------------------------GCCGCTGGGGAAGGGAAGAGGCTGGCGCTTGCAGAG 36
                                               ***********************************

consensus_5190#0      CTGGACGACAAC-CCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGG 179
consensus_5190#1      CTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGG 175
consensus_5190#2      CTGGACGACAACGCCGGTGGCGTCGACTGCTGATCGACGATGCGGATGGGGGGCGTGAGG 96
                      ************ ***********************************************

consensus_5190#0      AGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAG 239
consensus_5190#1      AGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAG 235
consensus_5190#2      AGCTGCAAAACCCAATGCCATATGAGACTGAATAAAATGAGGAGAGCTATAGTTGTGAAG 156
                      ************************************************************

consensus_5190#0      TGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATAC 299
consensus_5190#1      TGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTACCCAAGTTTTAGTTGTGAAGTGATAC 295
consensus_5190#2      TGATAACTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTAGTTGTGAAGTGATAC 216
                      ********************************* **************************

consensus_5190#0      TTAAGGCTTCGTCTTGCTGGCGTGAGTGCCCCAAGTTTTAGTTGTGAAGTGATACTTAAG 359
consensus_5190#1      TTAAGGCTTCGTCTTGCTGGCGTGAGTGCCC-AAGTTTTAGTTGTGAAGTGATACTTAAG 354
consensus_5190#2      TTAAGGCTTCGTCTTGCTGGCGTGAGTGCCC----------------------------- 247
                      *******************************                             

consensus_5190#0      GCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTT 419
consensus_5190#1      GCTTCGTCTTGCTGGCGTGAGTGCCCAAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTT 414
consensus_5190#2      --------------------------AAGTTTTCGTGTGTGGGGAGAGGCGCATCAGGTT 281
                                                **********************************

consensus_5190#0      GTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTT 479
consensus_5190#1      GTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTT 474
consensus_5190#2      GTGAAACCATGGTTTCTCTGAACAACCTGCAGTTTGCGTTGGTTCTCTCTGTTTCCTTTT 341
                      ************************************************************

consensus_5190#0      TTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAG 539
consensus_5190#1      TTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAG 534
consensus_5190#2      TTCTCGTGGTCGTTTTGTGTCTTTGTATCCGTTCCGTGCTGAGACTCTGGCTTGGTTAAG 401
                      ************************************************************

consensus_5190#0      CCCTAAATGTATTTTACTGCTNTTTACANGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 599
consensus_5190#1      CCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTC----------------- 577
consensus_5190#2      CCCTAAATGTATTTTACTGCTATTTACAAGTAATCGAGTTCTTTGTTACTGCTCAAAAAA 461
                      ********************* ****** ****   *                       

consensus_5190#0      AAAN- 603
consensus_5190#1      -----
consensus_5190#2      AAAAA 466