|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1019 fasta sequence
[ACGCTAACCTCCGCCATCCCCACGCCGCGCCGCCCGCCTGACCTCAGCCACGCACACGCTGCCCTCCCCACGCCGCCGCGCCGCCCGCCGTCCCCATGCCACCGCGCTGCCCGCCGTCTACCGCCACCGCCCCGCGCGCGCACCTGCCGGAGCCGCTCGCTCTACCCCACCACTTCCTCACACGCGGCCGTCGCCGCCTCGGATCTGTGTGTCGCCGCTGTCTACTCCCCAGCCCCGCGACTACTCCGCCGTCCACGGTTCGTCGCTGTCGCCCGTCGTCCGTGGCCACATAGCCGTGTGATCCCCCATCCCTATATCCCCGTCGCGCCGCCTCGCCATATCCAGATCACCACGACGATTCCTCCAGAACGAAGAGCTGCTCTCCTTTCTCGGCTCCTCCGTTGGGATCGAGAAGCTATTCGGACAACCTCCACTCCAACCAAGCACCGCCAGAGAGGACAGAGCTGGGGCTGAGGTGGGGAGAAGAGGAGCCAGCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCTGCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAAGCAGTAGGAGGCA-CCGATGAAGGTGATGAGGACTTGAGATGAGGCAGTATGCAGGCTTGCAGAGATGCAAATTAGGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCTACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCTGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAACTTTGCATATCAAAAA]
[+] EMBL AK109759 [ACGCTAACCTCCGCCATCCCCACGCCGCGCCGCCCGCCTGACCTCAGCCACGCACACGCTGCCCTCCCCACGCCGCCGCGCCGCCCGCCGTCCCCATGCCACCGCGCTGCCCGCCGTCTACCGCCACCGCCCCGCGCGCGCACCTGCCGGAGCCGCTCGCTCTACCCCACCACTTCCTCACACGCGGCCGTCGCCGCCTCGGATCTGTGTGTCGCCGCTGTCTACTCCCCAGCCCCGCGACTACTCCGCCGTCCACGGTTCGTCGCTGTCGCCCGTCGTCCGTGGCCACATAGCCGTGTGATCCCCCATCCCTATATCCCCGTCGCGCCGCCTCGCCATATCCAGATCACCACGACGATTCCTCCAGAACGAAGAGCTGCTCTCCTTTCTCGGCTCCTCCGTTGGGATCGAGAAGCTATTCGGACAACCTCCACTCCAACCAAGCACCGCCAGAGAGGACAGAGCTGGGGCTGAGGTGGGGAGAAGAGGAGCCAGCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCTGCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAAGCAGTAGGAGGCA CCGATGAAGGTGATGAGGACTTGAGATGAGGCAGTATGCAGGCTTGCAGAGATGCAAATTAGGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCTACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCTGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAAC ]
[+] EMBL BI803363 [ ACAGAGCT GGGCTGAGGTGGGGAGAAGAGGACCCACCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCTGCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAA CAGTAGGAGGCACCCGATGAAGGTGATGAGGACTTGAGATGAGCCAGTATGCAGGCTTGCAGAGATGCAAATTAGGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCTACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCTGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAACTTTGCATATCAAAAA]
consensusID : consensus_5191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[AGCGCCCGCTCGAACCCTTCCTACACCTGCCCGTGTGCCCCCTGTTCCAGCGGCGGTTACCAAGATATCAACTTTGCCGGCGGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCCAAGTTATGGCCCGTAGATGATAAAACCTTGTTGTGAGGCTGTGTTTAGTTCACCCTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCCCGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAA]
[-] EMBL BU673301 [AGCGCCCGCTCGAACCCTTCCTACACCTGCCCGTGTGCCCCCTGTTCCAGCGGCGGTTACCAAGATATCAACTTTGCCGGCGGTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAAGCCAAGTTATGGCCCGTAGATGATAAAACCTTGTTGTGAGGCTGTGTTTAGTTCACCCTGAAGTTTGGAAGTTTGATTGAAAGTTTTCTATCCCGATGTGATAGAAAAGTTGTGTGTGTATGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5191#0 ACGCTAACCTCCGCCATCCCCACGCCGCGCCGCCCGCCTGACCTCAGCCACGCACACGCT 60
consensus_5191#1 ------------------------------------------------------------
consensus_5191#0 GCCCTCCCCACGCCGCCGCGCCGCCCGCCGTCCCCATGCCACCGCGCTGCCCGCCGTCTA 120
consensus_5191#1 ------------------------------------------------------------
consensus_5191#0 CCGCCACCGCCCCGCGCGCGCACCTGCCGGAGCCGCTCGCTCTACCCCACCACTTCCTCA 180
consensus_5191#1 ------------------------------------------------------------
consensus_5191#0 CACGCGGCCGTCGCCGCCTCGGATCTGTGTGTCGCCGCTGTCTACTCCCCAGCCCCGCGA 240
consensus_5191#1 ------------------------------------------------------------
consensus_5191#0 CTACTCCGCCGTCCACGGTTCGTCGCTGTCGCCCGTCGTCCGTGGCCACATAGCCGTGTG 300
consensus_5191#1 ------------------------------------------------------------
consensus_5191#0 ATCCCCCATCCCTATATCCCCGTCGCGCCGCCTCGCCATATCCAGATCACCACGACGATT 360
consensus_5191#1 ------------------------------------------------------------
consensus_5191#0 CCTCCAGAACGAAGAGCTGCTCTCCTTTCTCGGCTCCTCCGTTGGGATCGAGAAGCTATT 420
consensus_5191#1 ------------------------------------------------------------
consensus_5191#0 CGGACAACCTCCACTCCAACCAAGCACCGCCAGAGAGGACAGAGCTGGGGCTGAGGTGGG 480
consensus_5191#1 ------------------------------------------------------------
consensus_5191#0 GAGAAGAGGAGCCAGCCGCCGGTCGGCCCGTCCGTCGCTGCCCCCGTGCTCCCACCTCCT 540
consensus_5191#1 ------------------------------------------------------------
consensus_5191#0 GCTTTCACGCCGACTGCCACTGCTCTTCCGGACTGGCAGAGCCCAAGCAGTAGGAGGCAC 600
consensus_5191#1 ------------------------------------------------------------
consensus_5191#0 CGATGAAGGTGATGAGGACTTGAGATGAGGCAGTATGCAGGCTTGCAGAGATGCAAATTA 660
consensus_5191#1 ------------------------------------------------------------
consensus_5191#0 GGCGTTAATTTCTTCAGGTCCCTTCTTGCAGCAGGAATTGCTCAAATCAGGTACCTTCCT 720
consensus_5191#1 --------------------------------AGCGCCCGCTCGAACC------CTTCCT 22
** **** ** * ******
consensus_5191#0 ACACCTGACAGTGTGCCCCCTGTTCCAGCGGCGGTTACAAAGATATCAACTTTGCCGGCT 780
consensus_5191#1 ACACCTGCCCGTGTGCCCCCTGTTCCAGCGGCGGTTACCAAGATATCAACTTTGCCGGCG 82
******* * **************************** ********************
consensus_5191#0 GTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAA 840
consensus_5191#1 GTATCCTTCCAGATCTCAGGTCCTGACATTTTCAGAAAATGAACATGTGTATCATATAAA 142
************************************************************
consensus_5191#0 GCAAAGTTATGGACAGTAGATGATAAAACATTGTTGTGAGGCTGTGTTTAGTTCACACTG 900
consensus_5191#1 GCCAAGTTATGGCCCGTAGATGATAAAACCTTGTTGTGAGGCTGTGTTTAGTTCACCCTG 202
** ********* * ************** ************************** ***
consensus_5191#0 AAGTTTGGAAGTTTGATTGAAAGTTTTCTATCACGATGTGATAGAAAAGTTGTGTGTGTA 960
consensus_5191#1 AAGTTTGGAAGTTTGATTGAAAGTTTTCTATCCCGATGTGATAGAAAAGTTGTGTGTGTA 262
******************************** ***************************
consensus_5191#0 TGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAAACTTTGCATATCAAAAA 1019
consensus_5191#1 TGAAAGGTTTGATGTGATGGAAAGTTGGAAGTTTGGAAAAAA----------------- 304
******************************************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||