cluster # 5192

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Oryza sativa
cluster # 5192 cluster # 5192 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5192#0 length = 388 sequences # 2

consensus_5192#1 length = 264 sequences # 1

consensusID : consensus_5192#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 388
fasta sequence

                              [TGTGTTGCTAAGGAGCTTCAAANAAATGGATTGGGTTATGCCCTGGTTGACAAGTCTAANAAACTGGCTCGTGAATGGGGTATAACTGATCTGTATGTCCATGTTGCCATCANCAATGAGGCAGCACANAAGCTGTGCAACAAATGTGGATTTGTCTATGAGAGTGAGGAGCCTGCATGGAAGGCTAGATTTCTTGGCCGGCCTCGAAGGCTGCTTCTTTGGCTCGATCTNAAGAAAGACGCTTTGTGATTATACGTGTAAATGCCTTTGTTTATAGTTACGTTCTTCCTATAGGATATTAATTAATGTATTTCTCTCNCTGCCTGATGCCNAAAGTTTTTAAATATAGTGATCTGTCTCGCTTTCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU182351             [TGTGTTGCTAAGGAGCTTCAAANAAATGGATTGGGTTATGCCCTGGTTGACAAGTCTAANAAACTGGCTCGTGAATGGGGTATAACTGATCTGTATGTCCATGTTGCCATCANCAATGAGGCAGCACANAAGCTGTGCAACAAATGTGGATTTGTCTATGAGAGTGAGGAGCCTGCATGGAAGGCTAGATTTCTTGGCCGGCCTCGAAGGCTGCTTCTTTGGCTCGATCTNAAGAAAGACGCTTTGTGATTATACGTGTAAATGCCTTTGTTTATAGTTACGTTCTTCCTATAGGATATTAATTAATGTATTTCTCTCNCTGCCTGATGCCNAAAGTTTTTAAATATAGTGATCTGTCTCGCTTTCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU089803             [                                                                    TCGTGAATGGGGTATAACTGATCTGTATGTCCATGTTGCCATCAACAATGAGGCAGCACAGAAGCTGTACAACAAATGTGGATTTGTCTATGAGAGTGAGGAGCCTGCATGGAAGGCTAGATTTCTTGGCCGGCCTCGAAGGCTGCTTCTTTGGCTCGATCTGAAGAAAGACGCTTTGTGATTATACGTGTAAATGCCTTTGTTTATAGTTACGTTCTTCCTATAGGATATTAATTAATGTATTTCTCTCACTGCCTGATGCCAAAAGTTTTTAAATATAGTGATCTGTCTCGC                          ]




>consensus_5192#0
TGTGTTGCTAAGGAGCTTCAAANAAATGGATTGGGTTATGCCCTGGTTGACAAGTCTAAN
AAACTGGCTCGTGAATGGGGTATAACTGATCTGTATGTCCATGTTGCCATCANCAATGAG
GCAGCACANAAGCTGTGCAACAAATGTGGATTTGTCTATGAGAGTGAGGAGCCTGCATGG
AAGGCTAGATTTCTTGGCCGGCCTCGAAGGCTGCTTCTTTGGCTCGATCTNAAGAAAGAC
GCTTTGTGATTATACGTGTAAATGCCTTTGTTTATAGTTACGTTCTTCCTATAGGATATT
AATTAATGTATTTCTCTCNCTGCCTGATGCCNAAAGTTTTTAAATATAGTGATCTGTCTC
GCTTTCAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_5192#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [TGAGGAGCCTGCATGGAAGGCTAGATTTCTTGGCCNGGCCTCGAAGGCTGCTTCTTTGGCCCCNANCNCGCACACGAACACGCACCGCTTTGTGATTATACGTGTAAATGCCTTTGTTTATAGTTACGTTCTTCCTATAGGATATTAATTAATGTATTTCTCTCACTGCCTGATGCCAAAAGTTTTTAAATATAGTGATNTNTCTCGCTTTCCTCCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU089804             [TGAGGAGCCTGCATGGAAGGCTAGATTTCTTGGCCNGGCCTCGAAGGCTGCTTCTTTGGCCCCNANCNCGCACACGAACACGCACCGCTTTGTGATTATACGTGTAAATGCCTTTGTTTATAGTTACGTTCTTCCTATAGGATATTAATTAATGTATTTCTCTCACTGCCTGATGCCAAAAGTTTTTAAATATAGTGATNTNTCTCGCTTTCCTCCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5192#1
TGAGGAGCCTGCATGGAAGGCTAGATTTCTTGGCCNGGCCTCGAAGGCTGCTTCTTTGGC
CCCNANCNCGCACACGAACACGCACCGCTTTGTGATTATACGTGTAAATGCCTTTGTTTA
TAGTTACGTTCTTCCTATAGGATATTAATTAATGTATTTCTCTCACTGCCTGATGCCAAA
AGTTTTTAAATATAGTGATNTNTCTCGCTTTCCTCCGTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5192#0      TGTGTTGCTAAGGAGCTTCAAANAAATGGATTGGGTTATGCCCTGGTTGACAAGTCTAAN 60
consensus_5192#1      ------------------------------------------------------------
                                                                                  

consensus_5192#0      AAACTGGCTCGTGAATGGGGTATAACTGATCTGTATGTCCATGTTGCCATCANCAATGAG 120
consensus_5192#1      ------------------------------------------------------------
                                                                                  

consensus_5192#0      GCAGCACANAAGCTGTGCAACAAATGTGGATTTGTCTATGAGAGTGAGGAGCCTGCATGG 180
consensus_5192#1      --------------------------------------------TGAGGAGCCTGCATGG 16
                                                                  ****************

consensus_5192#0      AAGGCTAGATTTCTTGGCCGG-CCTCGAAGGCTGCTTCTTTGGCTC-GATCTNAAGAAAG 238
consensus_5192#1      AAGGCTAGATTTCTTGGCCNGGCCTCGAAGGCTGCTTCTTTGGCCCCNANCNCGCACACG 76
                      ******************* * ********************** *  * *      * *

consensus_5192#0      A--------CGCTTTGTGATTATACGTGTAAATGCCTTTGTTTATAGTTACGTTCTTCCT 290
consensus_5192#1      AACACGCACCGCTTTGTGATTATACGTGTAAATGCCTTTGTTTATAGTTACGTTCTTCCT 136
                      *        ***************************************************

consensus_5192#0      ATAGGATATTAATTAATGTATTTCTCTCNCTGCCTGATGCCNAAAGTTTTTAAATATAGT 350
consensus_5192#1      ATAGGATATTAATTAATGTATTTCTCTCACTGCCTGATGCCAAAAGTTTTTAAATATAGT 196
                      **************************** ************ ******************

consensus_5192#0      GATCTGTCTCGCTTTC------AAAAAAAAAAAAAAAAAAAAAA---------------- 388
consensus_5192#1      GATNTNTCTCGCTTTCCTCCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 256
                      *** * **********      **********************                

consensus_5192#0      --------
consensus_5192#1      AAAAAAAA 264