These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence [CCAAAACCCCCTTCCCCAAGCATCGCCGGCTCGCCGCCATCGCCGCCATGGCACGGCGGCTGCTCCGCCTCCGCGCCCACGCCGCCGGCTTGTCCCAGCGCCTCGCCCCCCGCCTCCTCCCCTCGCGCCCGTACATCTCCGACATGCGCCGCTCCGCCTTCTCCGACCGCCTCCTCCGCTCCCTCCGCTCCGAAATCTCCTCCCGCCGCGCGCCCTCGCCCCCGCCCTCCGCGGCGCCCTTCGCCGTCGACGACCGCCCGGGCGAGCAGTGGATCCGGCTGCGCCGCGCGTTCGGTGGTGATGATGATGATGAGAAGGAGGAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACGGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCGAGTGCTCGGCGTGGCCCGATGAAATGGAGGTGGAGAGGGTCTACCCCGTCCGCCGCGGCGGGCCGGCGGCGGCGCAGCAGTACATGGGCCGCCATTTCAGTGAGTTGGATGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCGAGGGGTGAACGATGAGCTTGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGAACTGGTCCGGTGGTTTAAGAATGTGGAGTGCTTCATAAAAAAGTAGGCGATATCTTCTAGACACTTATGAGACAACATTAGTTGATCTTGCTTTGCAACAATTACAACCAGTGATCATTTTGGCACCAAATGTTCCCAATGCCACAAGTATTTGTTGTTATTATTGTTGTGCTAGATACACGAAGGTTGTAGTTGTACACTCCCAGTTCAGGACGAATTGGTTCACTAGTTTATCAAATGGTTTATACTCTACTGTGCTTCTCATCTTGAATATGGTATACT] [+] EMBL AK110628 [CCAAAACCCCCTTCCCCAAGCATCGCCGGCTCGCCGCCATCGCCGCCATGGCACGGCGGCTGCTCCGCCTCCGCGCCCACGCCGCCGGCTTGTCCCAGCGCCTCGCCCCCCGCCTCCTCCCCTCGCGCCCGTACATCTCCGACATGCGCCGCTCCGCCTTCTCCGACCGCCTCCTCCGCTCCCTCCGCTCCGAAATCTCCTCCCGCCGCGCGCCCTCGCCCCCGCCCTCCGCGGCGCCCTTCGCCGTCGACGACCGCCCGGGCGAGCAGTGGATCCGGCTGCGCCGCGCGTTCGGTGGTGATGATGATGATGAGAAGGAGGAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACGGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCGAGTGCTCGGCGTGGCCCGATGAAATGGAGGTGGAGAGGGTCTACCCCGTCCGCCGCGGCGGGCCGGCGGCGGCGCAGCAGTACATGGGCCGCCATTTCAGTGAGTTGGATGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCGAGGGGTGAACGATGAGCTTGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGAACTGGTCCGGTGGTTTAAGAATGTGGAGTGCTTCATAAAAAAGTAGGCGATATCTTCTAGACACTTATGAGACAACATTAGTTGATCTTGCTTTGCAACAATTACAACCAGTGATCATTTTGGCACCAAATGTTCCCAATGCCACAAGTATTTGTTGTTATTATTGTTGTGCTAGATACACGAAGGTTGTAGTTGTACACTCCCAGTTCAGGACGAATTGGTTCACTAGTTTATCAAATGGTTTATACTCTACTGTGCTTCTCATCTTGAATATGGTATACT] consensusID : consensus_5202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 856 fasta sequence [GAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACGGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCGAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGCCTACCCCGTCCTGTCTGGCGGGCCTGCGGCGTGGCTCACTGACATGGGCCTTCAACTTCTCAGGACTGGATGTACCGGTGCTGATCACAGTTGATTATGATTTGTCACTTCGCAGGGTTAGCCAGGAGCTTGGCGCATTTACTATCTCCTACCTGAACGACATTGTGCATGACTAATCTGCCCGATGTACTGTAGTAAGCGATGCTTACTACCACTTTAAGTGACTCGTTTACACACTTATGACACAACACTCCGCCATCTTCCTTCGCTAATCTACGCCGACTGCATATTCTGCGCCGCACTATTCGCAATGCAAGCCGACTTCGTCTCTCTACTTGCCCAAGCCAACTCCGACGCCGTCGACCTACACACTGACGCCATCGCCGTCGTACCACAAGCCGACGCCGTCCTACACCCCCGGCCCGGCGCCGCCCTACTATTTTGGGGGCGACGATTTTAGGAGCCGTTTCAGCCGAAGGTGGTTACCACGCCGTCCAGGTTCCGTATTTAGTTGTCCGCATGGTTGCTATGGGGTAGTTGTCCCCCGTATCCGGCCGCCGTCTGTTCTTGCCGTGCCGCTCGGCGCTTCGCNCGTCCGCCACCTTCGTTGTAGGCTCGTATCCTCGCCTTCCCCGCTCATTTTTTAT] [+] EMBL CA758216 [GAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACGGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCGAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGCCTACCCCGTCCTGTCTGGCGGGCCTGCGGCGTGGCTCACTGACATGGGCCTTCAACTTCTCAGGACTGGATGTACCGGTGCTGATCACAGTTGATTATGATTTGTCACTTCGCAGGGTTAGCCAGGAGCTTGGCGCATTTACTATCTCCTACCTGAACGACATTGTGCATGACTAATCTGCCCGATGTACTGTAGTAAGCGATGCTTACTACCACTTTAAGTGACTCGTTTACACACTTATGACACAACACTCCGCCATCTTCCTTCGCTAATCTACGCCGACTGCATATTCTGCGCCGCACTATTCGCAATGCAAGCCGACTTCGTCTCTCTACTTGCCCAAGCCAACTCCGACGCCGTCGACCTACACACTGACGCCATCGCCGTCGTACCACAAGCCGACGCCGTCCTACACCCCCGGCCCGGCGCCGCCCTACTATTTTGGGGGCGACGATTTTAGGAGCCGTTTCAGCCGAAGGTGGTTACCACGCCGTCCAGGTTCCGTATTTAGTTGTCCGCATGGTTGCTATGGGGTAGTTGTCCCCCGTATCCGGCCGCCGTCTGTTCTTGCCGTGCCGCTCGGCGCTTCGCNCGTCCGCCACCTTCGTTGTAGGCTCGTATCCTCGCCTTCCCCGCTCATTTTTTAT] consensusID : consensus_5202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [GAGGTCATGGTGGACGCCACCATGGAGGACGGCGCCACGAGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCACCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCCAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGTCTACCCCGTCCGCCGCGGCGGGCCGGCGGCGGCGCACCAGTACATGGGCCGCCAGTTCAGTGAGTTGGATGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCTAGGGGTGAACGATGAGCTTGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGATCTGGTCCGGTGGTTTAAGAATGTGGAGTGCTTCCTAAAAAAGTACGCGATATCTTGTATACACTTATGAGACATCATTAGTTGATCTTGCTTTGCAACTATTACAACCAGTGATCATTCTGGTACCAAATTTTCCCAATGCCACAAGTATTTGTTGCTATTATTGCTGCGCTAGATCACGAAGGTTGTAGTTGTACACTCCCAGTTCTGGATTAAAAAAATG] [+] EMBL CA758211 [GAGGTCATGGTGGACGCCACCATGGAGGACGGCGCCACGAGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCACCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCCAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGTCTACCCCGTCCGCCGCGGCGGGCCGGCGGCGGCGCACCAGTACATGGGCCGCCAGTTCAGTGAGTTGGATGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCTAGGGGTGAACGATGAGCTTGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGATCTGGTCCGGTGGTTTAAGAATGTGGAGTGCTTCCTAAAAAAGTACGCGATATCTTGTATACACTTATGAGACATCATTAGTTGATCTTGCTTTGCAACTATTACAACCAGTGATCATTCTGGTACCAAATTTTCCCAATGCCACAAGTATTTGTTGCTATTATTGCTGCGCTAGATCACGAAGGTTGTAGTTGTACACTCCCAGTTCTGGATTAAAAAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5202#0 CCAAAACCCCCTTCCCCAAGCATCGCCGGCTCGCCGCCATCGCCGCCATGGCACGGCGGC 60 consensus_5202#2 ------------------------------------------------------------ consensus_5202#1 ------------------------------------------------------------ consensus_5202#0 TGCTCCGCCTCCGCGCCCACGCCGCCGGCTTGTCCCAGCGCCTCGCCCCCCGCCTCCTCC 120 consensus_5202#2 ------------------------------------------------------------ consensus_5202#1 ------------------------------------------------------------ consensus_5202#0 CCTCGCGCCCGTACATCTCCGACATGCGCCGCTCCGCCTTCTCCGACCGCCTCCTCCGCT 180 consensus_5202#2 ------------------------------------------------------------ consensus_5202#1 ------------------------------------------------------------ consensus_5202#0 CCCTCCGCTCCGAAATCTCCTCCCGCCGCGCGCCCTCGCCCCCGCCCTCCGCGGCGCCCT 240 consensus_5202#2 ------------------------------------------------------------ consensus_5202#1 ------------------------------------------------------------ consensus_5202#0 TCGCCGTCGACGACCGCCCGGGCGAGCAGTGGATCCGGCTGCGCCGCGCGTTCGGTGGTG 300 consensus_5202#2 ------------------------------------------------------------ consensus_5202#1 ------------------------------------------------------------ consensus_5202#0 ATGATGATGATGAGAAGGAGGAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACG- 359 consensus_5202#2 --------------------GAGGTCATGGTGGACGCCACCATGGAGGACGGCGCCACGA 40 consensus_5202#1 --------------------GAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACG- 39 ******* ***************** ************* consensus_5202#0 GCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAG 419 consensus_5202#2 GCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAG 100 consensus_5202#1 GCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAG 99 ************************************************************ consensus_5202#0 CTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCG 479 consensus_5202#2 CTCAGGATGCACATCACCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCG 160 consensus_5202#1 CTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCG 159 **************** ******************************************* consensus_5202#0 CTCACCTTCGAGTGCTCGGCGTGGCCCGATGAAATGGAGGTGGAGAGGGTCTACCCCGTC 539 consensus_5202#2 CTCACCTTCCAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGTCTACCCCGTC 220 consensus_5202#1 CTCACCTTCGAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGCCTACCCCGTC 219 ********* ********************** **************** ********** consensus_5202#0 CGCCGCGGCGGGCCGGCGGCGGCGCAGCAGTACATGGGCCGCCA-TTTCAGTGAGTTGGA 598 consensus_5202#2 CGCCGCGGCGGGCCGGCGGCGGCGCACCAGTACATGGGCCGCCA-GTTCAGTGAGTTGGA 279 consensus_5202#1 CTGTCTGGCGGGCCTGCGGCGTGGCTCACTGACATGGGCCTTCAACTTCTCAGGACTGGA 279 * ******** ****** ** ********* ** *** * **** consensus_5202#0 TGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCGAGGGGTGAACGATGAGCT 658 consensus_5202#2 TGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCTAGGGGTGAACGATGAGCT 339 consensus_5202#1 TGTACCGGTGCTGATCACAGTTGATTATGATTTGTCACTTCGCAGGGTTAGCCAGGAGCT 339 ** * *** * *** ** ** ** * *** * ** **** * * * ***** consensus_5202#0 TGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGAACTGGTCCGGTGGTT 718 consensus_5202#2 TGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGATCTGGTCCGGTGGTT 399 consensus_5202#1 TGGCGCATTTACTATCTCCTACCTGAACGACATTGTGCATGACTAATCTGCCCGATG-TA 398 ** ****** *** *** ** * *** * *** * * *** ** * consensus_5202#0 TAAGAATGTGGAGTGCTTCATAAAAAAGTAGGCGATATCTTCTAGACACTTATGAGACAA 778 consensus_5202#2 TAAGAATGTGGAGTGCTTCCTAAAAAAGTACGCGATATCTTGTATACACTTATGAGACAT 459 consensus_5202#1 CTGTAGTAAGCGATGCTTACTACCACTTTAAGTGAC-TCGTTTACACACTTATGACACAA 457 * * * ***** ** * ** * ** ** * ** ********** *** consensus_5202#0 CATTAGTTGATCTTGCTTTGCAACAATTACAACCAGTGATCATTTTGGCACCAAATGTTC 838 consensus_5202#2 CATTAGTTGATCTTGCTTTGCAACTATTACAACCAGTGATCATTCTGGTACCAAATTTTC 519 consensus_5202#1 CACTCCGCCATCTTCCTTCGCTA-ATCTACGCCGACTGCATATTCTGCGCCGCACTATTC 516 ** * ***** *** ** * *** * * ** *** ** * * * *** consensus_5202#0 CCAATGCCACAAGTATTTGTTGTTATTATTGTT-GTGCTAGATACACGAAGGTTGTAGTT 897 consensus_5202#2 CCAATGCCACAAGTATTTGTTGCTATTATTGCT-GCGCTAGAT-CACGAAGGTTGTAGTT 577 consensus_5202#1 GCAATGCAAGCCGACTTCGTCTCTCTACTTGCCCAAGCCAACT---CCGACGCCGTCGAC 573 ****** * * ** ** * * *** ** * * * * * ** * consensus_5202#0 GTACACTCCCAGTTCAGGACGAATTGGTTCACTAGTTTATCAAATGGTTTATACTCTACT 957 consensus_5202#2 GTACACTCCCAGTTCTGGATTAAAAAAATG------------------------------ 607 consensus_5202#1 CTACACACTGACGCCATCGCCG-TCGTACCACAAGCCGACGCCGTCCTACACCCCCGGCC 632 ***** * * * consensus_5202#0 --GTGCTTCTC----ATCTTGAATATGGTATACT-------------------------- 985 consensus_5202#2 ------------------------------------------------------------ consensus_5202#1 CGGCGCCGCCCTACTATTTTGGGGGCGACGATTTTAGGAGCCGTTTCAGCCGAAGGTGGT 692 consensus_5202#0 ------------------------------------------------------------ consensus_5202#2 ------------------------------------------------------------ consensus_5202#1 TACCACGCCGTCCAGGTTCCGTATTTAGTTGTCCGCATGGTTGCTATGGGGTAGTTGTCC 752 consensus_5202#0 ------------------------------------------------------------ consensus_5202#2 ------------------------------------------------------------ consensus_5202#1 CCCGTATCCGGCCGCCGTCTGTTCTTGCCGTGCCGCTCGGCGCTTCGCNCGTCCGCCACC 812 consensus_5202#0 -------------------------------------------- consensus_5202#2 -------------------------------------------- consensus_5202#1 TTCGTTGTAGGCTCGTATCCTCGCCTTCCCCGCTCATTTTTTAT 856 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||