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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 815 fasta sequence
[CGGCGGCGCTACGAAGACACAGACGCGACGGCGGGGGCGGAGCACGGCGCGACCTAGAGGCGACGGCTACGGCGACGGCGACGACACAGCTCTCTTCTCCGGCCGCCACCTTCTCTCCAATGAGCACGCTTCCCTTCCCCCTCTCCCTTCCTCTTCAAAGTTAGGGTAGGGTTTCCTTCTCTTCTCTCTTTCCGGCTTTCCCGTCGTCGCACGCACCGTGCCGTAGGGGCCGGCCGTCTGGTCGTGCTCCGGCGCCAATGCCGACCGCGTGTTCAGCTTCAGCTCTGGCTTGGGGCTTGGGCTTGGGTGGCTTCGGCTTCGGCAGCGCTTTGTCCTTGTTCGGCTCTGGCGGTGGCATTGCCGGGACACGGGAGGGTTCTTGGACGCCAGAGAGGAGAGGAGAGGAGGAGAAGGAGGAGGAGAGGGTTCTTGGTTCTTGGCCCGTAGCCTTCAAAGTGTCGGCACCCTCCACGTCGGAATCTGAGTCATGTAGTTGCAGTTGCAGGTTTGCGAAATCTGAAGGAATTCAGAGTCATCTAGNTGCAGGTTCCATGAAATCGACTGGTAGGGAAATTCCAGATAATTTATTTGATGGTAGCAATTTTCTGAAGTTCCTGAAGATTTATTGCTTCAGACAGCATGACGAAAGTCAGGGCATCATTATAGCGTCTCCTGCTGCTCAGCTCATTNCACTCATAAGCCTGCTTAGTTTGGGATGGATCTGAGGTACAAAAAANGNGTTAAACTGAGNGCTCCACACAGGGAANGGGGGAATTTGANACTGGCGAAAAAAAAAAAAAAAAAAAAAAAACGGC]
[+] EMBL CA764538 [CGGCGGCGCTACGAAGACACAGACGCGACGGCGGGGGCGGAGCACGGCGCGACCTAGAGGCGACGGCTACGGCGACGGCGACGACACAGCTCTCTTCTCCGGCCGCCACCTTCTCTCCAATGAGCACGCTTCCCTTCCCCCTCTCCCTTCCTCTTCAAAGTTAGGGTAGGGTTTCCTTCTCTTCTCTCTTTCCGGCTTTCCCGTCGTCGCACGCACCGTGCCGTAGGGGCCGGCCGTCTGGTCGTGCTCCGGCGCCAATGCCGACCGCGTGTTCAGCTTCAGCTCTGGCTTGGGGCTTGGGCTTGGGTGGCTTCGGCTTCGGCAGCGCTTTGTCCTTGTTCGGCTCTGGCGGTGGCATTGCCGGGACACGGGAGGGTTCTTGGACGCCAGAGAGGAGAGGAGAGGAGGAGAAGGAGGAGGAGAGGGTTCTTGGTTCTTGGCCCGTAGCCTTCAAAGTGTCGGCACCCTCCACGTCGGAATCTGAGTCATGTAGTTGCAGTTGCAGGTTTGCGAAATCTGAAGGAATTCAGAGTCATCTAGNTGCAGGTTCCATGAAATCGACTGGTAGGGAAATTCCAGATAATTTATTTGATGGTAGCAATTTTCTGAAGTTCCTGAAGATTTATTGCTTCAGACAGCATGACGAAAGTCAGGGCATCATTATAGCGTCTCCTGCTGCTCAGCTCATTNCACTCATAAGCCTGCTTAGTTTGGGATGGATCTGAGGTACAAAAAANGNGTTAAACTGAGNGCTCCACACAGGGAANGGGGGAATTTGANACTGGCGAAAAAAAAAAAAAAAAAAAAAAAACGGC]
consensusID : consensus_521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[GACGCGACGCGGGGCAGCGCGCGGCGCGTGGCACGACCCGGAGGCGACGGCGATGGCACGGCTCTCTCCTCCGGCCGCCACCTTCTCTCCGGTTCCTTGAAATCGACTGGTAGGGATATTCCAGATAATTTATTTGATGGTAGCAATTTTCTGAGGTTCCTGAAGATTTATTGCTTCAGACAGCATGATGAAAGTCAGGGCATCATTATAGTGTCTCCTGCTGCTCAGCTCATTCCACTCATAAACCTGTTTAGTTTGTGATTTATCTGAGTTACTAAGAATGTGTTTAAACTGAGTTCTCCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCTTTTTTTTCTTTGTACCCATCACTGTTTTCCTGTACTTCTAATCTGCAATACTGTCCCGGCAAGCGTTGAAGCGTCGCTGCTCAGATTAAAAAAAAAA]
[+] EMBL BI801444 [GACGCGACGCGGGGCAGCGCGCGGCGCGTGGCACGACCCGGAGGCGACGGCGATGGCACGGCTCTCTCCTCCGGCCGCCACCTTCTCTCCGGTTCCTTGAAATCGACTGGTAGGGATATTCCAGATAATTTATTTGATGGTAGCAATTTTCTGAGGTTCCTGAAGATTTATTGCTTCAGACAGCATGATGAAAGTCAGGGCATCATTATAGTGTCTCCTGCTGCTCAGCTCATTCCACTCATAAACCTGTTTAGTTTGTGATTTATCTGAGTTACTAAGAATGTGTTTAAACTGAGTTCTCCCACACAGTGAAATGTGTGATATTTGATACTGTGGACATCTTTTTTTTCTTTGTACCCATCACTGTTTTCCTGTACTTCTAATCTGCAATACTGTCCCGGCAAGCGTTGAAGCGTCGCTGCTCAGATTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_521#0 CGGCGGCGCTACGAAGACACAGACGCGACGGCGGGGGCGGAGCACGGCGCGACCTAGAGG 60
consensus_521#1 ------------------------------------------------------------
consensus_521#0 CGACGGCTACGGCGACGGCGACGACACAGCTCTCTTCTCCGGCCGCCACCTTCTCTCCAA 120
consensus_521#1 ------------------------------------------------------------
consensus_521#0 TGAGCACGCTTCCCTTCCCCCTCTCCCTTCCTCTTCAAAGTTAGGGTAGGGTTTCCTTCT 180
consensus_521#1 ------------------------------------------------------------
consensus_521#0 CTTCTCTCTTTCCGGCTTTCCCGTCGTCGCACGCACCGTGCCGTAGGGGCCGGCCGTCTG 240
consensus_521#1 ------------------------------------------------------------
consensus_521#0 GTCGTGCTCCGGCGCCAATGCCGACCGCGTGTTCAGCTTCAGCTCTGGCTTGGGGCTTGG 300
consensus_521#1 ------------------------------------------------------------
consensus_521#0 GCTTGGGTGGCTTCGGCTTCGGCAGCGCTTTGTCCTTGTTCGGCTCTGGCGGTGGCATTG 360
consensus_521#1 ------------------------------------------------------------
consensus_521#0 CCGGGACACGGGAGGGTTCTTGGACGCCAGAGAGGAGAGGAGAGGAGGAGAAGGAGGAGG 420
consensus_521#1 ------------------------------------------------------------
consensus_521#0 AGAGGGTTCTTGGTTCTTGGCCCGTAGCCTTCAAAGTGTCGGCACCCTCCACGTCGGAAT 480
consensus_521#1 -----------------------------------GACGCGACGCGGGGCAGCGCGCGGC 25
* ** * * ** **
consensus_521#0 CTGAGTCATGTAGTTGCAGTTGCAGGTTTGCGAAATCTGAAGGAATTCAGAGTCATCTAG 540
consensus_521#1 GCGTGGCACGACCCGGAGGCGACGGCGATGGCACGGCTCTCTCCTCCGGCCGCCACCTTC 85
* * ** * * * * * ** * ** * ** **
consensus_521#0 NTGCAGGTTCCATGAAATCGACTGGTAGGGAAATTCCAGATAATTTATTTGATGGTAGCA 600
consensus_521#1 TCTCCGGTTCCTTGAAATCGACTGGTAGGGATATTCCAGATAATTTATTTGATGGTAGCA 145
* ****** ******************* ****************************
consensus_521#0 ATTTTCTGAAGTTCCTGAAGATTTATTGCTTCAGACAGCATGACGAAAGTCAGGGCATCA 660
consensus_521#1 ATTTTCTGAGGTTCCTGAAGATTTATTGCTTCAGACAGCATGATGAAAGTCAGGGCATCA 205
********* ********************************* ****************
consensus_521#0 TTATAGCGTCTCCTGCTGCTCAGCTCATTNCACTCATAAGCCTGCTTAGTTTGGGATGGA 720
consensus_521#1 TTATAGTGTCTCCTGCTGCTCAGCTCATTCCACTCATAAACCTGTTTAGTTTGTGATTTA 265
****** ********************** ********* **** ******** *** *
consensus_521#0 TCTGAGGTACAAAAAANGNGTT-AAACTGAGNGCTCC-ACACAG-GGAANGGGGGA-ATT 776
consensus_521#1 TCTGAGTTACTAAGAATGTGTTTAAACTGAGTTCTCCCACACAGTGAAATGTGTGATATT 325
****** *** ** ** * *** ******** **** ****** * ** * * ** ***
consensus_521#0 TGANACTGGCGAAAAAAAAAAAAAAAAAAAAAAAACGGC--------------------- 815
consensus_521#1 TGATACTGTGGACATCTTTTTTTTCTTTGTACCCATCACTGTTTTCCTGTACTTCTAATC 385
*** **** ** * * * *
consensus_521#0 ------------------------------------------------------
consensus_521#1 TGCAATACTGTCCCGGCAAGCGTTGAAGCGTCGCTGCTCAGATTAAAAAAAAAA 439
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||