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Oryza sativa
cluster # 5224 cluster # 5224       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5224#0 length = 948 sequences # 3  

consensusID : consensus_5224#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 948
fasta sequence
                              [GCAGAACTGGCGATGAGGGATGAACCTAACGTTGAGTTAAGGCGCTCAAATGTACGCTCATCAGATACCATAAAAGGTGTTGATTCATAAAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATGAATTAGCCCTGAAAATTGATGGCGCTGAAGCGTACTGCCGATACTCAACCATTAGTGCAAATCGTATGAGGCACTAATGAGTAAGACTCCTCCCTCGTCACGCAATCCCCAAATCCACTCCTCCCTGCCGGCTCTCCCCTCCTCCCTTCGCTGACGCCGACTCCCCTCCTCCCTCCGCCGGCGCCGGCTCTCCTCTCCTCCGGGCGGTGGCTCCCCTCCTCCCTCCGCCAGCGCCAGTGCCGGCTCTCCTCTCCTCCGGGCGTCGTCCTCGAAGAAGCGACGGCAGCGTCCTCTGAGCCGTGCGGTGGCGTCGTCCTCGGGGCCGAGCTACGACGGCGCCCTCGAAGACGGCGGTGGCGGCGCGGATCTGGAGCGCGGAGGACGGTGCAAGCGCGGGACGGCGGCGGCGGCGCGGATCTGGGCTCCTCCTCTCTCGGCCGGCGACGAGGAGACGAAGCCGCTCGTGGTCGTTGTCCTCCTCGCTTTGTCTCCACTTTCCGCCGCCGGCGGCGAGGAGAGAAGGACGGCGGCGGCGCCCTCGGCGACGGTCCTCGGCGACGTCTCATCTCCTCGCAAAGTGGGCCCCGCGCCTGACTTTTTAAGCGAGGTTGCTCGTTCCTCTCCTGGGATGCGAAGAACCCAGTGTAGCTATGGGCCCTACCAACTTTTTTCGCCACATAGACTAGGTAACACACCA-CGTAGGAC-TAGGTAACTCC-CACTGTGAAAG-GCCTAAGCACTACAACATTTTGACATGGACTCCACCGTTTCTACATAAATAAACATTCCCAA]

[+] EMBL AK108937             [GCAGAACTGGCGATGAGGGATGAACCTAACGTTGAGTTAAGGCGCTCAAATGTACGCTCATCAGATACCATAAAAGGTGTTGATTCATAAAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATGAATTAGCCCTGAAAATTGATGGCGCTGAAGCGTACTGCCGATACTCAACCATTAGTGCAAATCGTATGAGGCACTAATGAGTAAGACTCCTCCCTCGTCACGCAATCCCCAAATCCACTCCTCCCTGCCGGCTCTCCCCTCCTCCCTTCGCTGACGCCGACTCCCCTCCTCCCTCCGCCGGCGCCGGCTCTCCTCTCCTCCGGGCGGTGGCTCCCCTCCTCCCTCCGCCAGCGCCAGTGCCGGCTCTCCTCTCCTCCGGGCGTCGTCCTCGAAGAAGCGACGGCAGCGTCCTCTGAGCCGTGCGGTGGCGTCGTCCTCGGGGCCGAGCTACGACGGCGCCCTCGAAGACGGCGGTGGCGGCGCGGATCTGGAGCGCGGAGGACGGTGCAAGCGCGGGACGGCGGCGGCGGCGCGGATCTGGGCTCCTCCTCTCTCGGCCGGCGACGAGGAGACGAAGCCGCTCGTGGTCGTTGTCCTCCTCGCTTTGTCTCCACTTTCCGCCGCCGGCGGCGAGGAGAGAAGGACGGCGGCGGCGCCCTCGGCGACGGTCCTCGGCGACGTCTCATCTCCTCGCAAAGTGGGCCCCGCGCCTGACTTTTTAAGCGAGGTTGCTCGTTCCTCTCCTGGGATGCGAAGAACCCAGTGTAGCTATGGGCCCTACCAACTTTTTTCGCCACATAGACTAGGTAACACACCA CGTAGGAC TAGGTAACTCC CACTGTGAAAG GCCTAAGCACTACAACATTTTGACATGGACTCCACCGTTTCTACATAAATAAACATTCCCAA]
[+] EMBL CB663661             [                                                                                                                                                                                                                                                                             AAATCCACTCCTCCCTGCCGGCTCTCCCCTCCTCCCTTCGCTGACGCCGACTCCCCTCCTCCCTCCGCCGGCGCCGGCTCTCCTCTCCTCCGGGCGGTGGCTCCCCTCCTCCCTCCGCCAGCGCCAGTGCCGGCTCTCCTCTCCTCCGGGCGTCGTCCTCGAAGAAGCGACGGCAGCGTCCTCTGAGCCGTGCGGTGGCGTCGTCCTCGGGGCCGAGCTACGACGGCGCCCTCGAAGACGGCGGTGGCGGCGCGGATCTGGAGCGCGGAGGACGGTGCAAGCGCGGGACGGCGGCGGCGGCGCGGATCTGGGCTCCTCCTCTCTCGGCCGGCGACGAGGAGACGAAGCCGCTCGTGGTCGTTGTCCTCCTCGCTTTGTCTCCACTTTCCGCCGCCGGCGGCGAGGAGAGAAGGACGGCGGCGGCGCCCTCGGCGACGGTCCTCGGCGACGTCTCATCTCCTCGCAAAGTGGGCCCCGCGCCTGACTTTTTAAGCGAGGTTGCTCGTTCCTCTCCTGGGATGCGAAGAACCCAGTGTAGCTATGGGCCCTACCAACTTTTTTCGCCACATAGACTAGGTAACACACCA CGTAGGAC TAGGTAACTCC CACTGTGAAAG GCCTAAGCACTACAACATTTTGACATGGACTCCACCGTTTCTACATAAATAAACATTCCCAA]
[-] EMBL CB663662             [                                                                                                                                                                                                                                                                                                                                                   GCGCCGGCTCTCATCTCCTCCGGGCGGTGGCTCCCCTCCTCCCTCCGCCAGCGCCAGTGCCGGCTCTCCTCTCCTCCGGGTGTCGTCCTCGAAGAAGTGACGGCAGCGTCCTCTGAGCCGTGCGGTGGCGTCGTCCTCGGGGCCGAGCTACGACGGCGCCCTCGAAGACGGCGGTGGCGGCGCGGATCTGGAGCGCGGAGGACGGTGCAAGCGCGGGACGGCGGCGGCGGCGCGGATATGGGCTCCTCCTCTCTCGGCCGGCGACGAGGAGACGAAGCCGTTCGTGGTTGTTGTCCTCCTCGATTTGTATCCACTTTCCGCCCCCGGCGGCGAGGAGAGAAGGACGGCGGCGGCGCCCTCGGCGACGGTCCTCGGCGACGTCTCATCTCCTCGCAAAGTGGGCCCCGCGCCTGACTTTTTAAGCGAGGTTGCTCGTTCCTCTCGTGGGATGCGAAGAACCCAGTGTAGCTATGGGCCCTACCAACTTTTTTCGCCACATAGACTAGGTAACACACCAGCGTAGGACATAGGTAACTCCGCGCTGTGAAAGCGCCTAc                                                        ]


>consensus_5224#0 GCAGAACTGGCGATGAGGGATGAACCTAACGTTGAGTTAAGGCGCTCAAATGTACGCTCA TCAGATACCATAAAAGGTGTTGATTCATAAAGACAGCAGGACGGTGGCCATGGAAGTCGG AATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATGAATTAGCCCTGAAAATTGATG GCGCTGAAGCGTACTGCCGATACTCAACCATTAGTGCAAATCGTATGAGGCACTAATGAG TAAGACTCCTCCCTCGTCACGCAATCCCCAAATCCACTCCTCCCTGCCGGCTCTCCCCTC CTCCCTTCGCTGACGCCGACTCCCCTCCTCCCTCCGCCGGCGCCGGCTCTCCTCTCCTCC GGGCGGTGGCTCCCCTCCTCCCTCCGCCAGCGCCAGTGCCGGCTCTCCTCTCCTCCGGGC GTCGTCCTCGAAGAAGCGACGGCAGCGTCCTCTGAGCCGTGCGGTGGCGTCGTCCTCGGG GCCGAGCTACGACGGCGCCCTCGAAGACGGCGGTGGCGGCGCGGATCTGGAGCGCGGAGG ACGGTGCAAGCGCGGGACGGCGGCGGCGGCGCGGATCTGGGCTCCTCCTCTCTCGGCCGG CGACGAGGAGACGAAGCCGCTCGTGGTCGTTGTCCTCCTCGCTTTGTCTCCACTTTCCGC CGCCGGCGGCGAGGAGAGAAGGACGGCGGCGGCGCCCTCGGCGACGGTCCTCGGCGACGT CTCATCTCCTCGCAAAGTGGGCCCCGCGCCTGACTTTTTAAGCGAGGTTGCTCGTTCCTC TCCTGGGATGCGAAGAACCCAGTGTAGCTATGGGCCCTACCAACTTTTTTCGCCACATAG ACTAGGTAACACACCACGTAGGACTAGGTAACTCCCACTGTGAAAGGCCTAAGCACTACA ACATTTTGACATGGACTCCACCGTTTCTACATAAATAAACATTCCCAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)