cluster # 5225

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Oryza sativa
cluster # 5225 cluster # 5225 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5225#0 length = 749 sequences # 1

consensus_5225#1 length = 743 sequences # 2

consensusID : consensus_5225#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 749
fasta sequence

                              [ATTTCTCCTTCGTCTGGGCAAGCCGGCGGGCGGGGCGAGGTGGGAGAAGAGGTCGGGCGGCCGGCGACCGGCGACGGGCGATGCGGCAGCGGCGGCCGCGGCGGCGGTGGCGATGACGACGACGTGGGAATAGGAGGGCCGCCCCCTATGCCGCCAGCCTCCGTCGCCTCTCCACCAGCTCCCATGGATGATGACGGCGGCCTCCTCGCTCTCCCCGTTGCGCTCCCCATCGGCTCCTCATCCTTCGTGCTCCGTGAGGACGGCGTCTCGCGCGCCGCTGACGAGGCTGCCGCCCCGCGCTGCTTGCCGCTGCTGTTCGATCTGAACCTGCCGGCCTCGTCCCCGTCGGCTGCTGCCGCCGCCGAAGTCGACGAGATGGATTGGTGTTGCGACACGCTGCTCCACCTCTAGCCTGCACATCACCAAACAATGGCAGCAATCGCCGGCGAACTCTAGCCTACGACGACGACGACGACGACCAACCAGCAAGCAACAAGAATTGGAAATTTGTTACTGGGTTGCTGCGCTCCAATCCAACCATCACCATTGTTGCTGCTGCTACTGCGAAGAAGCTCTACCATCTCCTCCATAGACACGGATAATTTTCTTTTTATTTTCGTTTTCCTCCATCTCTTTTTCACCACTCAAGATTTCGTTTCCGCCGCCTCTCTTGTGCATCTCTGTATCCAAAGGGGATGCTGCTGCTTTCAGCTGTACCAATAGCTAGAAAATGGTAGAGAAGATGATAA]

[+] EMBL AK108006             [ATTTCTCCTTCGTCTGGGCAAGCCGGCGGGCGGGGCGAGGTGGGAGAAGAGGTCGGGCGGCCGGCGACCGGCGACGGGCGATGCGGCAGCGGCGGCCGCGGCGGCGGTGGCGATGACGACGACGTGGGAATAGGAGGGCCGCCCCCTATGCCGCCAGCCTCCGTCGCCTCTCCACCAGCTCCCATGGATGATGACGGCGGCCTCCTCGCTCTCCCCGTTGCGCTCCCCATCGGCTCCTCATCCTTCGTGCTCCGTGAGGACGGCGTCTCGCGCGCCGCTGACGAGGCTGCCGCCCCGCGCTGCTTGCCGCTGCTGTTCGATCTGAACCTGCCGGCCTCGTCCCCGTCGGCTGCTGCCGCCGCCGAAGTCGACGAGATGGATTGGTGTTGCGACACGCTGCTCCACCTCTAGCCTGCACATCACCAAACAATGGCAGCAATCGCCGGCGAACTCTAGCCTACGACGACGACGACGACGACCAACCAGCAAGCAACAAGAATTGGAAATTTGTTACTGGGTTGCTGCGCTCCAATCCAACCATCACCATTGTTGCTGCTGCTACTGCGAAGAAGCTCTACCATCTCCTCCATAGACACGGATAATTTTCTTTTTATTTTCGTTTTCCTCCATCTCTTTTTCACCACTCAAGATTTCGTTTCCGCCGCCTCTCTTGTGCATCTCTGTATCCAAAGGGGATGCTGCTGCTTTCAGCTGTACCAATAGCTAGAAAATGGTAGAGAAGATGATAA]




>consensus_5225#0
ATTTCTCCTTCGTCTGGGCAAGCCGGCGGGCGGGGCGAGGTGGGAGAAGAGGTCGGGCGG
CCGGCGACCGGCGACGGGCGATGCGGCAGCGGCGGCCGCGGCGGCGGTGGCGATGACGAC
GACGTGGGAATAGGAGGGCCGCCCCCTATGCCGCCAGCCTCCGTCGCCTCTCCACCAGCT
CCCATGGATGATGACGGCGGCCTCCTCGCTCTCCCCGTTGCGCTCCCCATCGGCTCCTCA
TCCTTCGTGCTCCGTGAGGACGGCGTCTCGCGCGCCGCTGACGAGGCTGCCGCCCCGCGC
TGCTTGCCGCTGCTGTTCGATCTGAACCTGCCGGCCTCGTCCCCGTCGGCTGCTGCCGCC
GCCGAAGTCGACGAGATGGATTGGTGTTGCGACACGCTGCTCCACCTCTAGCCTGCACAT
CACCAAACAATGGCAGCAATCGCCGGCGAACTCTAGCCTACGACGACGACGACGACGACC
AACCAGCAAGCAACAAGAATTGGAAATTTGTTACTGGGTTGCTGCGCTCCAATCCAACCA
TCACCATTGTTGCTGCTGCTACTGCGAAGAAGCTCTACCATCTCCTCCATAGACACGGAT
AATTTTCTTTTTATTTTCGTTTTCCTCCATCTCTTTTTCACCACTCAAGATTTCGTTTCC
GCCGCCTCTCTTGTGCATCTCTGTATCCAAAGGGGATGCTGCTGCTTTCAGCTGTACCAA
TAGCTAGAAAATGGTAGAGAAGATGATAA

consensusID : consensus_5225#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 743
fasta sequence

                              [AGCTCTCGGGCTGCCGCCGCCGCGCAACGGCGGCAGCAACCCCGCCGCCGACGAGGACTGCCGCAGCTACTGCGGCTCCTCTTCCTCCGTGCTCTGCGAGGACGGCGCCTCGGGCGCCGGCGACGAGGCCGCCGCCCCGCGCTGCTCGCCGCTGCCGTTCGATCTGAACCTGCCGGCCTCGTCCCCATCCGCCGCCGCCGCCGCCGAAGCCGACGAGATGGATTGGCGCTGCGACACGCTGCTCCACCTCTAGCCTGCACACGACCAGCCGTCTCCAGCAATCTCCGGCGAACTCTAGCCTACGACGACCACGACCACGACCAACCAGCAAGCAGCAAGAACCGACGAACTGGTACTGGATTGCTGTGCTCCAATCCAACCATCGCCATTGCTGCTACTGCGAAGAAGCTCTCTACCATCTCCTCCATAGACACGGATAATTATTTCTTCTTTTTTTCTTTTTGTTTTCGTTTTCTTCTATCTCTTTTTCACCACTCAGGATTTGATACTCCTCTTATGTGATAATGTGAATAACTTTATCATGTAAACCGTGAGTAAAATTCGGTATTTCCGCCGGCTCTCTCGTGCATCTCTGTATCCAAAAGGGGGATGCTGNTTGCTGCTGCTGCTTTCAGTTGTACCAATAGATAGAAAATGGTAGAGAAGATGAAGAAAAATTTGGGTTCAAAATTTGTAACGTAAACGTTATCGGAATACACTGGGATTAGAAAGAAAAAAAAAAA]

[+] EMBL AU090555             [AGCTCTCGGGCTGCCGCCGCCGCGCAACGGCGGCAGCAACCCCGCCGCCGACGAGGACTGCCGCAGCTACTGCGGCTCCTCTTCCTCCGTGCTCTGCGAGGACGGCGCCTCGGGCGCCGGCGACGAGGCCGCCGCCCCGCGCTGCTCGCCGCTGCCGTTCGATCTGAACCTGCCGGCCTCGTCCCCATCCGCCGCCGCCGCCGCCGAAGCCGACGAGATGGATTGGCGCTGCGACACGCTGCTCCACCTCTAGCCTGCACACGACCAGCCGTCTCCAGCAATCTCCGGCGAACTCTAGCCTACGACGACCACGACCACGACCAACCAGCAAGCAGCAAGAACCGACGAACTGGTACTGGATTGCTGTGCTCCAATCCAACCATCGCCATTGCTGCTACTGCGAAGAAGCTCTCTACCATCTCCTCCATAGACACGGATAATTATTTCTTCTTTTTTTCTTTTTGTTTTCGTTTTCTTCTATCTCTTTTTCACCACTCAGGATTTGATACTCCTCTTATGTGATAATGTGAATAACTTTATCATGTAAACCGTGAGTAAAATTCGGTATTTCCGCCGGCTCTCTCGTGCATCTCTGTATCCAAAAGGGGGATGCTGNTTGCTGCTGCTGCTTTCAGTTGTACCAATAGATAGAAAATGGTAGAGAAGATGAAGAAAAATTTGGGTTCAAAATTT                                                  ]
[+] EMBL AU090554             [                                                                                                                                                                                                                                           ACGCTGCTCCACCTCTAGCCTGCACACGACCAGCCGTCTCCAGCAATCTCCGGCGAACTCTAGCCTACGACGACCACGACCACGACCAACCAGCAAGCAGCAAGAACCGACGAACTGGTACTGGATTGCTGTGCTCCAATCCAACCATCGCCATTGCTGCTACTGCGAAGAAGCTCTCTACCATCTCCTCCATAGACACGGATAATTATTTCTTCTTTTTTTCTTTTTGTTTTCGTTTTCTTCTATCTCTTTTTCACCACTCAGGATTTGATACTCCTCTTATGTGATAATGTGAATAACTTTATCATGTAAACCGTGAGTAAAATTCGGTATTTCCGCCGCCTCTCTCGTGCATCTCTGTATCCAAAAGGGGGATGCTG CTGCTGCTGCTGCTTTCAGTTGTACCAATAGATAGAAAATGGTAGAGAAGATG AG AAAATTT GGTTCAAAATTTGTAACGTAAACGTTATCGGAATACACTGGGATTAGAAAGAAAAAAAAAAA]




>consensus_5225#1
AGCTCTCGGGCTGCCGCCGCCGCGCAACGGCGGCAGCAACCCCGCCGCCGACGAGGACTG
CCGCAGCTACTGCGGCTCCTCTTCCTCCGTGCTCTGCGAGGACGGCGCCTCGGGCGCCGG
CGACGAGGCCGCCGCCCCGCGCTGCTCGCCGCTGCCGTTCGATCTGAACCTGCCGGCCTC
GTCCCCATCCGCCGCCGCCGCCGCCGAAGCCGACGAGATGGATTGGCGCTGCGACACGCT
GCTCCACCTCTAGCCTGCACACGACCAGCCGTCTCCAGCAATCTCCGGCGAACTCTAGCC
TACGACGACCACGACCACGACCAACCAGCAAGCAGCAAGAACCGACGAACTGGTACTGGA
TTGCTGTGCTCCAATCCAACCATCGCCATTGCTGCTACTGCGAAGAAGCTCTCTACCATC
TCCTCCATAGACACGGATAATTATTTCTTCTTTTTTTCTTTTTGTTTTCGTTTTCTTCTA
TCTCTTTTTCACCACTCAGGATTTGATACTCCTCTTATGTGATAATGTGAATAACTTTAT
CATGTAAACCGTGAGTAAAATTCGGTATTTCCGCCGGCTCTCTCGTGCATCTCTGTATCC
AAAAGGGGGATGCTGNTTGCTGCTGCTGCTTTCAGTTGTACCAATAGATAGAAAATGGTA
GAGAAGATGAAGAAAAATTTGGGTTCAAAATTTGTAACGTAAACGTTATCGGAATACACT
GGGATTAGAAAGAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5225#0      ATTTCTCCTTCGTCTGGGCAAGCCGGCGGGCGGGGCGAGGTGGGAGAAGAGGTCGGGCGG 60
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      CCGGCGACCGGCGACGGGCGATGCGGCAGCGGCGGCCGCGGCGGCGGTGGCGATGACGAC 120
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      GACGTGGGAATAGGAGGGCCGCCCCCTATGCCGCCAGCCTCCGTCGCCTCTCCACCAGCT 180
consensus_5225#1      --------------------------------------AGCTCTCGGGCTGCCGCCGCCG 22
                                                              *  ***     ** **  * 

consensus_5225#0      CCCATGGATGATGACGGCGGCCTCCTCGCTCTCC----CCGTTGCGCTCCCCATCGGCTC 236
consensus_5225#1      CGCA---ACGGCGGCAGCAACCCCGCCGCCGACGAGGACTGCCGCAGCTACTG-CGGCTC 78
                      * **   * *  * * **  ** *  ***   *     * *  **     *   ******

consensus_5225#0      CTCATCCTTCGTGCTCCGTGAGGACGGCGTCTCGCGCGCCGCTGACGAGGCTGCCGCCCC 296
consensus_5225#1      CTCTTCCTCCGTGCTCTGCGAGGACGGCGCCTCGGGCGCCGGCGACGAGGCCGCCGCCCC 138
                      *** **** ******* * ********** **** ******  ******** ********

consensus_5225#0      GCGCTGCTTGCCGCTGCTGTTCGATCTGAACCTGCCGGCCTCGTCCCCGTCGGCTGCTGC 356
consensus_5225#1      GCGCTGCTCGCCGCTGCCGTTCGATCTGAACCTGCCGGCCTCGTCCCCATCCGCCGCCGC 198
                      ******** ******** ****************************** ** ** ** **

consensus_5225#0      CGCCGCCGAAGTCGACGAGATGGATTGGTGTTGCGACACGCTGCTCCACCTCTAGCCTGC 416
consensus_5225#1      CGCCGCCGAAGCCGACGAGATGGATTGGCGCTGCGACACGCTGCTCCACCTCTAGCCTGC 258
                      *********** **************** * *****************************

consensus_5225#0      ACATCACCAAACAATGGCAGCAATCGCCGGCGAACTCTAGCCTACGACGACGACGACGAC 476
consensus_5225#1      ACACGACCAGCCGTCTCCAGCAATCTCCGGCGAACTCTAGCCTACGACGACCACGACCAC 318
                      ***  ****  *     ******** ************************* ***** **

consensus_5225#0      GACCAACCAGCAAGCAACAAGAATTGGAAATTTGTTACTGGGTTGCTGCGCTCCAATCCA 536
consensus_5225#1      GACCAACCAGCAAGCAGCAAGAACCGACGAACTGGTACTGGATTGCTGTGCTCCAATCCA 378
                      **************** ******  *   *  ** ****** ****** ***********

consensus_5225#0      ACCATCACCATTGTTGCTGCTGCTACTGCGAAGAAGCTCT--ACCATCTCCTCCATAGAC 594
consensus_5225#1      ACCATCGCCATTG------CTGCTACTGCGAAGAAGCTCTCTACCATCTCCTCCATAGAC 432
                      ****** ******      *********************  ******************

consensus_5225#0      ACGGATAATT-------------TTCTTTTTATTTTCGTTTTCCTCCATCTCTTTTTCAC 641
consensus_5225#1      ACGGATAATTATTTCTTCTTTTTTTCTTTTTGTTTTCGTTTTCTTCTATCTCTTTTTCAC 492
                      **********             ******** *********** ** *************

consensus_5225#0      CACTCAAGATTT------------------------------------------------ 653
consensus_5225#1      CACTCAGGATTTGATACTCCTCTTATGTGATAATGTGAATAACTTTATCATGTAAACCGT 552
                      ****** *****                                                

consensus_5225#0      -------------CGTTTCCGCCGCCTCTCTTGTGCATCTCTGTATCCAAAGGGGA---- 696
consensus_5225#1      GAGTAAAATTCGGTATTTCCGCCGGCTCTCTCGTGCATCTCTGTATCCAAAAGGGGGATG 612
                                     ********* ****** ******************* ***     

consensus_5225#0      --------TGCTGCTGCTTTCAGCTGTACCAATAGCTAGAAAATGGTAGAGAAGATGATA 748
consensus_5225#1      CTGNTTGCTGCTGCTGCTTTCAGTTGTACCAATAGATAGAAAATGGTAGAGAAGATGAAG 672
                              *************** *********** **********************  

consensus_5225#0      A----------------------------------------------------------- 749
consensus_5225#1      AAAAATTTGGGTTCAAAATTTGTAACGTAAACGTTATCGGAATACACTGGGATTAGAAAG 732
                      *                                                           

consensus_5225#0      -----------
consensus_5225#1      AAAAAAAAAAA 743