These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [ATTTCTCCTTCGTCTGGGCAAGCCGGCGGGCGGGGCGAGGTGGGAGAAGAGGTCGGGCGGCCGGCGACCGGCGACGGGCGATGCGGCAGCGGCGGCCGCGGCGGCGGTGGCGATGACGACGACGTGGGAATAGGAGGGCCGCCCCCTATGCCGCCAGCCTCCGTCGCCTCTCCACCAGCTCCCATGGATGATGACGGCGGCCTCCTCGCTCTCCCCGTTGCGCTCCCCATCGGCTCCTCATCCTTCGTGCTCCGTGAGGACGGCGTCTCGCGCGCCGCTGACGAGGCTGCCGCCCCGCGCTGCTTGCCGCTGCTGTTCGATCTGAACCTGCCGGCCTCGTCCCCGTCGGCTGCTGCCGCCGCCGAAGTCGACGAGATGGATTGGTGTTGCGACACGCTGCTCCACCTCTAGCCTGCACATCACCAAACAATGGCAGCAATCGCCGGCGAACTCTAGCCTACGACGACGACGACGACGACCAACCAGCAAGCAACAAGAATTGGAAATTTGTTACTGGGTTGCTGCGCTCCAATCCAACCATCACCATTGTTGCTGCTGCTACTGCGAAGAAGCTCTACCATCTCCTCCATAGACACGGATAATTTTCTTTTTATTTTCGTTTTCCTCCATCTCTTTTTCACCACTCAAGATTTCGTTTCCGCCGCCTCTCTTGTGCATCTCTGTATCCAAAGGGGATGCTGCTGCTTTCAGCTGTACCAATAGCTAGAAAATGGTAGAGAAGATGATAA] [+] EMBL AK108006 [ATTTCTCCTTCGTCTGGGCAAGCCGGCGGGCGGGGCGAGGTGGGAGAAGAGGTCGGGCGGCCGGCGACCGGCGACGGGCGATGCGGCAGCGGCGGCCGCGGCGGCGGTGGCGATGACGACGACGTGGGAATAGGAGGGCCGCCCCCTATGCCGCCAGCCTCCGTCGCCTCTCCACCAGCTCCCATGGATGATGACGGCGGCCTCCTCGCTCTCCCCGTTGCGCTCCCCATCGGCTCCTCATCCTTCGTGCTCCGTGAGGACGGCGTCTCGCGCGCCGCTGACGAGGCTGCCGCCCCGCGCTGCTTGCCGCTGCTGTTCGATCTGAACCTGCCGGCCTCGTCCCCGTCGGCTGCTGCCGCCGCCGAAGTCGACGAGATGGATTGGTGTTGCGACACGCTGCTCCACCTCTAGCCTGCACATCACCAAACAATGGCAGCAATCGCCGGCGAACTCTAGCCTACGACGACGACGACGACGACCAACCAGCAAGCAACAAGAATTGGAAATTTGTTACTGGGTTGCTGCGCTCCAATCCAACCATCACCATTGTTGCTGCTGCTACTGCGAAGAAGCTCTACCATCTCCTCCATAGACACGGATAATTTTCTTTTTATTTTCGTTTTCCTCCATCTCTTTTTCACCACTCAAGATTTCGTTTCCGCCGCCTCTCTTGTGCATCTCTGTATCCAAAGGGGATGCTGCTGCTTTCAGCTGTACCAATAGCTAGAAAATGGTAGAGAAGATGATAA] consensusID : consensus_5225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 743 fasta sequence [AGCTCTCGGGCTGCCGCCGCCGCGCAACGGCGGCAGCAACCCCGCCGCCGACGAGGACTGCCGCAGCTACTGCGGCTCCTCTTCCTCCGTGCTCTGCGAGGACGGCGCCTCGGGCGCCGGCGACGAGGCCGCCGCCCCGCGCTGCTCGCCGCTGCCGTTCGATCTGAACCTGCCGGCCTCGTCCCCATCCGCCGCCGCCGCCGCCGAAGCCGACGAGATGGATTGGCGCTGCGACACGCTGCTCCACCTCTAGCCTGCACACGACCAGCCGTCTCCAGCAATCTCCGGCGAACTCTAGCCTACGACGACCACGACCACGACCAACCAGCAAGCAGCAAGAACCGACGAACTGGTACTGGATTGCTGTGCTCCAATCCAACCATCGCCATTGCTGCTACTGCGAAGAAGCTCTCTACCATCTCCTCCATAGACACGGATAATTATTTCTTCTTTTTTTCTTTTTGTTTTCGTTTTCTTCTATCTCTTTTTCACCACTCAGGATTTGATACTCCTCTTATGTGATAATGTGAATAACTTTATCATGTAAACCGTGAGTAAAATTCGGTATTTCCGCCGGCTCTCTCGTGCATCTCTGTATCCAAAAGGGGGATGCTGNTTGCTGCTGCTGCTTTCAGTTGTACCAATAGATAGAAAATGGTAGAGAAGATGAAGAAAAATTTGGGTTCAAAATTTGTAACGTAAACGTTATCGGAATACACTGGGATTAGAAAGAAAAAAAAAAA] [+] EMBL AU090555 [AGCTCTCGGGCTGCCGCCGCCGCGCAACGGCGGCAGCAACCCCGCCGCCGACGAGGACTGCCGCAGCTACTGCGGCTCCTCTTCCTCCGTGCTCTGCGAGGACGGCGCCTCGGGCGCCGGCGACGAGGCCGCCGCCCCGCGCTGCTCGCCGCTGCCGTTCGATCTGAACCTGCCGGCCTCGTCCCCATCCGCCGCCGCCGCCGCCGAAGCCGACGAGATGGATTGGCGCTGCGACACGCTGCTCCACCTCTAGCCTGCACACGACCAGCCGTCTCCAGCAATCTCCGGCGAACTCTAGCCTACGACGACCACGACCACGACCAACCAGCAAGCAGCAAGAACCGACGAACTGGTACTGGATTGCTGTGCTCCAATCCAACCATCGCCATTGCTGCTACTGCGAAGAAGCTCTCTACCATCTCCTCCATAGACACGGATAATTATTTCTTCTTTTTTTCTTTTTGTTTTCGTTTTCTTCTATCTCTTTTTCACCACTCAGGATTTGATACTCCTCTTATGTGATAATGTGAATAACTTTATCATGTAAACCGTGAGTAAAATTCGGTATTTCCGCCGGCTCTCTCGTGCATCTCTGTATCCAAAAGGGGGATGCTGNTTGCTGCTGCTGCTTTCAGTTGTACCAATAGATAGAAAATGGTAGAGAAGATGAAGAAAAATTTGGGTTCAAAATTT ] [+] EMBL AU090554 [ ACGCTGCTCCACCTCTAGCCTGCACACGACCAGCCGTCTCCAGCAATCTCCGGCGAACTCTAGCCTACGACGACCACGACCACGACCAACCAGCAAGCAGCAAGAACCGACGAACTGGTACTGGATTGCTGTGCTCCAATCCAACCATCGCCATTGCTGCTACTGCGAAGAAGCTCTCTACCATCTCCTCCATAGACACGGATAATTATTTCTTCTTTTTTTCTTTTTGTTTTCGTTTTCTTCTATCTCTTTTTCACCACTCAGGATTTGATACTCCTCTTATGTGATAATGTGAATAACTTTATCATGTAAACCGTGAGTAAAATTCGGTATTTCCGCCGCCTCTCTCGTGCATCTCTGTATCCAAAAGGGGGATGCTG CTGCTGCTGCTGCTTTCAGTTGTACCAATAGATAGAAAATGGTAGAGAAGATG AG AAAATTT GGTTCAAAATTTGTAACGTAAACGTTATCGGAATACACTGGGATTAGAAAGAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5225#0 ATTTCTCCTTCGTCTGGGCAAGCCGGCGGGCGGGGCGAGGTGGGAGAAGAGGTCGGGCGG 60 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 CCGGCGACCGGCGACGGGCGATGCGGCAGCGGCGGCCGCGGCGGCGGTGGCGATGACGAC 120 consensus_5225#1 ------------------------------------------------------------ consensus_5225#0 GACGTGGGAATAGGAGGGCCGCCCCCTATGCCGCCAGCCTCCGTCGCCTCTCCACCAGCT 180 consensus_5225#1 --------------------------------------AGCTCTCGGGCTGCCGCCGCCG 22 * *** ** ** * consensus_5225#0 CCCATGGATGATGACGGCGGCCTCCTCGCTCTCC----CCGTTGCGCTCCCCATCGGCTC 236 consensus_5225#1 CGCA---ACGGCGGCAGCAACCCCGCCGCCGACGAGGACTGCCGCAGCTACTG-CGGCTC 78 * ** * * * * ** ** * *** * * * ** * ****** consensus_5225#0 CTCATCCTTCGTGCTCCGTGAGGACGGCGTCTCGCGCGCCGCTGACGAGGCTGCCGCCCC 296 consensus_5225#1 CTCTTCCTCCGTGCTCTGCGAGGACGGCGCCTCGGGCGCCGGCGACGAGGCCGCCGCCCC 138 *** **** ******* * ********** **** ****** ******** ******** consensus_5225#0 GCGCTGCTTGCCGCTGCTGTTCGATCTGAACCTGCCGGCCTCGTCCCCGTCGGCTGCTGC 356 consensus_5225#1 GCGCTGCTCGCCGCTGCCGTTCGATCTGAACCTGCCGGCCTCGTCCCCATCCGCCGCCGC 198 ******** ******** ****************************** ** ** ** ** consensus_5225#0 CGCCGCCGAAGTCGACGAGATGGATTGGTGTTGCGACACGCTGCTCCACCTCTAGCCTGC 416 consensus_5225#1 CGCCGCCGAAGCCGACGAGATGGATTGGCGCTGCGACACGCTGCTCCACCTCTAGCCTGC 258 *********** **************** * ***************************** consensus_5225#0 ACATCACCAAACAATGGCAGCAATCGCCGGCGAACTCTAGCCTACGACGACGACGACGAC 476 consensus_5225#1 ACACGACCAGCCGTCTCCAGCAATCTCCGGCGAACTCTAGCCTACGACGACCACGACCAC 318 *** **** * ******** ************************* ***** ** consensus_5225#0 GACCAACCAGCAAGCAACAAGAATTGGAAATTTGTTACTGGGTTGCTGCGCTCCAATCCA 536 consensus_5225#1 GACCAACCAGCAAGCAGCAAGAACCGACGAACTGGTACTGGATTGCTGTGCTCCAATCCA 378 **************** ****** * * ** ****** ****** *********** consensus_5225#0 ACCATCACCATTGTTGCTGCTGCTACTGCGAAGAAGCTCT--ACCATCTCCTCCATAGAC 594 consensus_5225#1 ACCATCGCCATTG------CTGCTACTGCGAAGAAGCTCTCTACCATCTCCTCCATAGAC 432 ****** ****** ********************* ****************** consensus_5225#0 ACGGATAATT-------------TTCTTTTTATTTTCGTTTTCCTCCATCTCTTTTTCAC 641 consensus_5225#1 ACGGATAATTATTTCTTCTTTTTTTCTTTTTGTTTTCGTTTTCTTCTATCTCTTTTTCAC 492 ********** ******** *********** ** ************* consensus_5225#0 CACTCAAGATTT------------------------------------------------ 653 consensus_5225#1 CACTCAGGATTTGATACTCCTCTTATGTGATAATGTGAATAACTTTATCATGTAAACCGT 552 ****** ***** consensus_5225#0 -------------CGTTTCCGCCGCCTCTCTTGTGCATCTCTGTATCCAAAGGGGA---- 696 consensus_5225#1 GAGTAAAATTCGGTATTTCCGCCGGCTCTCTCGTGCATCTCTGTATCCAAAAGGGGGATG 612 ********* ****** ******************* *** consensus_5225#0 --------TGCTGCTGCTTTCAGCTGTACCAATAGCTAGAAAATGGTAGAGAAGATGATA 748 consensus_5225#1 CTGNTTGCTGCTGCTGCTTTCAGTTGTACCAATAGATAGAAAATGGTAGAGAAGATGAAG 672 *************** *********** ********************** consensus_5225#0 A----------------------------------------------------------- 749 consensus_5225#1 AAAAATTTGGGTTCAAAATTTGTAACGTAAACGTTATCGGAATACACTGGGATTAGAAAG 732 * consensus_5225#0 ----------- consensus_5225#1 AAAAAAAAAAA 743 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||