|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[TNGNCCNATTNAAGGANCCCAGNCCGGGGAACAATTAGGTGGGGAATTNCTTGNACCCCCAAATTTCTTTNCGGACTCCGGACTCCGGNAGGCCTCCACNAGGCCNGGAAGNTTGNATNCCAGTTTTGGAACCCCTTCAGATNCCCGACTCCATGCCTCTGAAATCCGGATTNACCGAAGACCATTNACNATTGAAATCTNTGGTGGATTCCTGGTGAAGACCGACCGTTGCCCATGGATGGTTCCAGAAGATGATGGTTGGTGAATGCTGCCCGAANCGTGGGATNAAGATGGAAGCGCAAGGCGAAGGGACGCCGACATGGAGATGGGCCAGTGAAGTCGGACAGCCGAAGACGAGAGGCAGCGGCGAAGGGAGAAAGCACTGGCCAAGTCTCGGTGTCCTAGTCATCCACAGGCCAAGGGTNNTGCGCACAAGAGGCAGCGAATTAACTAGTTCTCAGATAATGGAAGTTTAGCTTGTTCTTGTGGCACTTTATTATGCATCTGTCGCTTTTTACCTGTCGTTAGTTTCGGTGGTGAACTTTTGATATGTTCTTCTAGGTACTTTGCATAAGTACATTACTTTGTCAGCATAAGTGACTCGAAGAATGTTCAGTTTTCTATTATAGCAACATTATCTCGTTTTACTGCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU032662 [TNGNCCNATTNAAGGANCCCAGNCCGGGGAACAATTAGGTGGGGAATTNCTTGNACCCCCAAATTTCTTTNCGGACTCCGGACTCCGGNAGGCCTCCACNAGGCCNGGAAGNTTGNATNCCAGTTTTGGAACCCCTTCAGATNCCCGACTCCATGCCTCTGAAATCCGGATTNACCGAAGACCATTNACNATTGAAATCTNTGGTGGATTCCTGGTGAAGACCGACCGTTGCCCATGGATGGTTCCAGAAGATGATGGTTGGTGAATGCTGCCCGAANCGTGGGATNAAGATGGAAGCGCAAGGCGAAGGGACGCCGACATGGAGATGGGCCAGTGAAGTCGGACAGCCGAAGACGAGAGGCAGCGGCGAAGGGAGAAAGCACTGGCCAAGTCTCGGTGTCCTAGTCATCCACAGGCCAAGGGTNNTGCGCACAAGAGGCAGCGAATTAACTAGTTCTCAGATAATGGAAGTTTAGCTTGTTCTTGTGGCACTTTATTATGCATCTGTCGCTTTTTACCTGTCGTTAGTTTCGGTGGTGAACTTTTGATATGTTCTTCTAGGTACTTTGCATAAGTACATTACTTTGTCAGCATAAGTGACTCGAAGAATGTTCAGTTTTCTATTATAGCAACATTATCTCGTTTTACTGCAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_5231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 534 fasta sequence
[TCGGACTCGGAGAGCTCACAGACAGAAGATGATCAGTATGAACCATCAGATGCCGACTCATGCTCTGAATCGGATGACGAAGACAGTGACAGTGAATCTGTGGTGGATTCTGGTGAAGACGACGGTGCCATGGATGGTTCAGAAGATGATGGTGGTGATGCTGCCGAATCGTGGGATGAGATGGAGCGCAAGGCGAGGGACGCCGACATGGAGATGGGCAGTGAGTCGGACAGCGAAGACGAGAGGCAGCGGCGAAGGGAGAAAGCACTGGCCAAGTCTCGGTGTCCTAGTCATCCACAGGCCAAGGGTGCTGCGCACAAGAGGCAGCGAATTAACTAGTTCTCAGATAATGGAAGTTTAGCTTGTTCTTGTGGCACTTTATTATGCATCTGTCGCTTTTTACCTGTCGTTAGTTTCGGTGGTGAACTTTTGATATGTTCTTCTAGGTACTTTGCATAAGTACATTACTTTGTCAGCATAAGTGACTCGAAGAATGTTCAGTTTT-CTATTATAGCAACATTATCTCGTTTTACT]
[-] EMBL CB636922 [TCGGACTCGGAGAGCTCACAGACAGAAGATGATCAGTATGAACCATCAGATGCCGACTCATGCTCTGAATCGGATGACGAAGACAGTGACAGTGAATCTGTGGTGGATTCTGGTGAAGACGACGGTGCCATGGATGGTTCAGAAGATGATGGTGGTGATGCTGCCGAATCGTGGGATGAGATGGAGCGCAAGGCGAGGGACGCCGACATGGAGATGGGCAGTGAGTCGGACAGCGAAGACGAGAGGCAGCGGCGAAGGGAGAAAGCACTGGCCAAGTCTCGGTGTCCTAGTCATCCACAGGCCAAGGGTGCTGCGCACAAGAGGCAGCGAATTAACTAGTTCTCAGATAATGGAAGTTTAGCTTGTTCTTGTGGCACTTTATTATGCATCTGTCGCTTTTTACCTGTCGTTAGTTTCGGTGGTGAACTTTTGATATGTTCTTCTAGGTACTTTGCATAAGTACATTACTTTGTCAGCATAAGTGACTCGAAGAATGTTCAGTTTT CTATTATAGCAACATTATCTCGTTTTACT]
[-] EMBL CB638477 [ CGGTGCCATGGATGGTTCAGAAGATGATGGTGGTGATGCTGCCGAATCGTGGGATGAGATGGAGCGCAAGGCGAGGGACGCCGACATGGAGATGGGCAGTGAGTCGGACAGCGAAGACGAGAGGCAGCGGCGAAGGGAGAAAGCACTGGCCAAGTCTCGGTGTCCTAGTCATCCACAGGCCAAGGGTGCTGCGCACAAGAGGCAGCGAATTAACTAGTTCTCAGATAATGGAAGTTTAGCTTGTTCTTGTGGCACTTTATTATGCATCTGTCGCTTTTTACCTGTCGTTAGTTTCGGTGGTGAACTTTTGATATGTTCTTCTAGGTACTTTGCATAAGTACATTACTTTGTCAGCATAAGTGACTCGAAGAATGTTCAGTTTTNCTATTATAGCAACA AATCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5231#0 TNGNCCNATTNAAGGANCCCAGNCCGGGGAACAATTAGGTGGGGAATTNCTTGNACCCCC 60
consensus_5231#1 ------------------------------------------------------------
consensus_5231#0 AAATTTCTTTNCGGACTCCGGACTCCGGNAGGCCTCCACNAGGCCNGGAAGNTTGNATNC 120
consensus_5231#1 ----------------------------TCGGACTCGGAGAGCTCACAGACAGAAGATGA 32
** *** ** * * **
consensus_5231#0 CAGTTTTGGAACCCCTTCAGATNCCCGACTCCATGCCTCTGAAATCCGGATTNACCGAAG 180
consensus_5231#1 TCAGTATGAA---CCATCAGATGCC-GACTC-ATGC-TCTGAA--TCGGATGA--CGAAG 82
* ** * ** ****** ** ***** **** ****** ***** *****
consensus_5231#0 ACCATTNACNATTGAAATCTNTGGTGGATTCCTGGTGAAGACCGACCGTTGCCCATGGAT 240
consensus_5231#1 AC-AGTGACAGT--GAATCTGTGGTGGATTC-TGGTGAAGAC-GACGGTG--CCATGGAT 135
** * * ** * ***** ********** ********** *** ** ********
consensus_5231#0 GGTTCCAGAAGATGATGGTTGGTGAATGCTGCCCGAANCGTGGGATNAAGATGGAAGCGC 300
consensus_5231#1 GGTTC-AGAAGATGATGGT-GGTGA-TGCTGCC-GAATCGTGGGATGA-GATGGA-GCGC 189
***** ************* ***** ******* *** ******** * ****** ****
consensus_5231#0 AAGGCGAAGGGACGCCGACATGGAGATGGGCCAGTGAAGTCGGACAGCCGAAGACGAGAG 360
consensus_5231#1 AAGGCGA-GGGACGCCGACATGGAGATGGGC-AGTGA-GTCGGACAGC-GAAGACGAGAG 245
******* *********************** ***** ********** ***********
consensus_5231#0 GCAGCGGCGAAGGGAGAAAGCACTGGCCAAGTCTCGGTGTCCTAGTCATCCACAGGCCAA 420
consensus_5231#1 GCAGCGGCGAAGGGAGAAAGCACTGGCCAAGTCTCGGTGTCCTAGTCATCCACAGGCCAA 305
************************************************************
consensus_5231#0 GGGTNNTGCGCACAAGAGGCAGCGAATTAACTAGTTCTCAGATAATGGAAGTTTAGCTTG 480
consensus_5231#1 GGGTGCTGCGCACAAGAGGCAGCGAATTAACTAGTTCTCAGATAATGGAAGTTTAGCTTG 365
**** ******************************************************
consensus_5231#0 TTCTTGTGGCACTTTATTATGCATCTGTCGCTTTTTACCTGTCGTTAGTTTCGGTGGTGA 540
consensus_5231#1 TTCTTGTGGCACTTTATTATGCATCTGTCGCTTTTTACCTGTCGTTAGTTTCGGTGGTGA 425
************************************************************
consensus_5231#0 ACTTTTGATATGTTCTTCTAGGTACTTTGCATAAGTACATTACTTTGTCAGCATAAGTGA 600
consensus_5231#1 ACTTTTGATATGTTCTTCTAGGTACTTTGCATAAGTACATTACTTTGTCAGCATAAGTGA 485
************************************************************
consensus_5231#0 CTCGAAGAATGTTCAGTTTTCTATTATAGCAACATTATCTCGTTTTACTGCAAAAAAAAA 660
consensus_5231#1 CTCGAAGAATGTTCAGTTTTCTATTATAGCAACATTATCTCGTTTTACT----------- 534
*************************************************
consensus_5231#0 AAAAAAAAAAAAAAAAA 677
consensus_5231#1 -----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||