These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 869 fasta sequence [TCAAAATTCGGAGGGAGGAATCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGATATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGG-CGGCTTTCTCGGTGAGGCCTTCGCCGGCGGCGGCGAGGCCGTGCGTCGCGGCGTCCGCGTCGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGGAGGCGGAGGCGGAGGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGACGCGCAGCCGGCGGCGCGGGAGGAGGCGCGGCCGAATCCGATGGCGGCGGCGGAGCAGCGTGGCGGCGGCGGGAAGAGGTTCGGCGTGCTGACGGAGGAGAAGGCGCGGCAGCTGCGCGCACGGATGATGGAGACGGAGAGCTTCCACGACTGCATGTACCACTCCGCCATCGCCTCCCGCCTCGCCTCCGCCGCCCCCGCCGACGACGGCAAGCACTGAGCCGCCGCCGCCATCCATGGCTCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTGTGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATTAGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTTCATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGTTGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACAATCACTCTGGAATTTTCAGAAATTTCAGTG] [+] EMBL AK071289 [TCAAAATTCGGAGGGAGGAATCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGATATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGG CGGCTTTCTCGGTGAGGCCTTCGCCGGCGGCGGCGAGGCCGTGCGTCGCGGCGTCCGCGTCGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGGAGGCGGAGGCGGAGGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGACGCGCAGCCGGCGGCGCGGGAGGAGGCGCGGCCGAATCCGATGGCGGCGGCGGAGCAGCGTGGCGGCGGCGGGAAGAGGTTCGGCGTGCTGACGGAGGAGAAGGCGCGGCAGCTGCGCGCACGGATGATGGAGACGGAGAGCTTCCACGACTGCATGTACCACTCCGCCATCGCCTCCCGCCTCGCCTCCGCCGCCCCCGCCGACGACGGCAAGCACTGAGCCGCCGCCGCCATCCATGGCTCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTGTGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATTAGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTTCATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGTTGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACAATCACTCTGGAATTTTCAGAAATTTCAGTG] [+] EMBL AU173097 [ GAGGGAGGAATCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGATATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGGCCGGCTTTCTCGGTGAGGCCTTCGCCGGCGGCGGCGAGGCCGTGCGTCGCGGCGTCCGCGTCGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGGAGGCGGAGGCGGAGGCGGCGGNAAGTGGTGGGCCCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGACGCGCAGCC ] consensusID : consensus_5239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [GAATCCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGATATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGCGGCTTTCTCGGTGAGGCCTTCGCCGGCGNCGGCGAGGCCGTGCGTCGCGGCGTCCGCGTCGGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGNAGGCGGAGGCGGAGGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGACGCGCAGCCGGCGGCGCGGGAGGAGGCGCCGCCATCCATGGCTCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTGTGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATTAGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTTCATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGTTGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACAATCACTCTGAAATTTTCAGAAATTTCAGTGTTCATTTTTTATCTCTGAAAGTTTCGAGAATTCAAAAAA] [+] EMBL AU101612 [GAATCCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGATATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGCGGCTTTCTCGGTGAGGCCTTCGCCGGCGNCGGCGAGGCCGTGCGTCGCGGCGTCCGCGTCGGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGNAGGCGGAGGCGGAGGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGACGCGCAGCCGGCGGCGCGGGAGGAGGCGCCGCCATCCATGGCTCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTGTGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATTAGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTTCATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGTTGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACAATCACTCTGAAATTTTCAGAAATTTCAGTGTTCATTTTTTATCTCTGAAAGTTTCGAGAATTCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5239#0 TCAAAATTCGGAGGGAGGAATCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGA 60 consensus_5239#1 ----------------GAATCCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGA 44 * * *************************************** consensus_5239#0 TATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGG 120 consensus_5239#1 TATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGG- 103 *********************************************************** consensus_5239#0 CGGCTTTCTCGGTGAGGCCTTCGCCGGCGGCGGCGAGGCCGTGCGTCGCGGCGTCCGCGT 180 consensus_5239#1 CGGCTTTCTCGGTGAGGCCTTCGCCGGCGNCGGCGAGGCCGTGCGTCGCGGCGTCCGCGT 163 ***************************** ****************************** consensus_5239#0 CGG-CCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGGAGGCGGAGGCGGA 239 consensus_5239#1 CGGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGNAGGCGGAGGCGGA 223 *** ****************************************** ************* consensus_5239#0 GGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGAC 299 consensus_5239#1 GGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGAC 283 ************************************************************ consensus_5239#0 GCGCAGCCGGCGGCGCGGGAGGAGGCGCGGCCGAATCCGATGGCGGCGGCGGAGCAGCGT 359 consensus_5239#1 GCGCAGCCGGCGGCGCGGGAGGAGGCGC-------------------------------- 311 **************************** consensus_5239#0 GGCGGCGGCGGGAAGAGGTTCGGCGTGCTGACGGAGGAGAAGGCGCGGCAGCTGCGCGCA 419 consensus_5239#1 ------------------------------------------------------------ consensus_5239#0 CGGATGATGGAGACGGAGAGCTTCCACGACTGCATGTACCACTCCGCCATCGCCTCCCGC 479 consensus_5239#1 ------------------------------------------------------------ consensus_5239#0 CTCGCCTCCGCCGCCCCCGCCGACGACGGCAAGCACTGAGCCGCCGCCGCCATCCATGGC 539 consensus_5239#1 -----------------------------------------------CGCCATCCATGGC 324 ************* consensus_5239#0 TCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTG 599 consensus_5239#1 TCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTG 384 ************************************************************ consensus_5239#0 TGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATT 659 consensus_5239#1 TGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATT 444 ************************************************************ consensus_5239#0 AGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTT 719 consensus_5239#1 AGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTT 504 ************************************************************ consensus_5239#0 CATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGT 779 consensus_5239#1 CATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGT 564 ************************************************************ consensus_5239#0 TGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACA 839 consensus_5239#1 TGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACA 624 ************************************************************ consensus_5239#0 ATCACTCTGGAATTTTCAGAAATTTCAGTG------------------------------ 869 consensus_5239#1 ATCACTCTGAAATTTTCAGAAATTTCAGTGTTCATTTTTTATCTCTGAAAGTTTCGAGAA 684 ********* ******************** consensus_5239#0 --------- consensus_5239#1 TTCAAAAAA 693 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||