cluster # 524

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Oryza sativa
cluster # 524 cluster # 524 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_524#0 length = 813 sequences # 1

consensus_524#1 length = 433 sequences # 1

consensusID : consensus_524#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 813
fasta sequence

                              [GAACTTCAGACACAGGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCAAATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCGGCTCCNCGGCCNGCGCGGNACGCCCCCCGCCCAGGGCGAGGCTCCATGGTGGTACGCGCGCGCGCCTACGACGACCAGCTCATCACCAGCGTCGTAGCTACCCAATAATCTTGGCTCCACTCTTGAATTGCTCTGGTGCTAGGGAGAAACGCCCAATGGTGGTCCGGGTAGCTCCATGAAGCGGCGGGCTAGACAATCTTGGGACGAAGCTTCGCGACACATAATTACTGCAGAAGATATTATGAGCTTTCCTAATATCCGGGAGGCTGTGGTCGACGGCTTGAGATCACCTGACGGACCGAGTCGCTGCGGATCAATGGACAGGCGCGGTGCTCCGGGGATGGCGAACGACTGATGGGCGAGTCGACGCGCGTGCGGGTGGAGCCGACGTGACGGATAGGCCTGAGGAGTGACGCTGGTGAGCCGATGCCTGGTGGGCATTGGGCGCGGAGTCTCCGAGGGGCGTACGGCGGGAGTATGCGGTCAGGAGAGGTGTCGAGGAGCCTGGCAGGGGCGAGAGGGCGCGTGCAAGTGGAGGGGGCGGCACGACCAGTGATGGAGTCGCGATAGCGGGGATGGCGCGCTGGGGGTGGCTGAGACGGGAGGTAGGAGCTGAGGGGATCGGACGTATGGGGCTGCGTGTGCGGCGAGGAGGGGGAGGAGGGGCGTGCGGATAGTGACGGGTGAGTCGAGGCGTGCACGCG]

[+] EMBL AW155130             [GAACTTCAGACACAGGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCAAATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCGGCTCCNCGGCCNGCGCGGNACGCCCCCCGCCCAGGGCGAGGCTCCATGGTGGTACGCGCGCGCGCCTACGACGACCAGCTCATCACCAGCGTCGTAGCTACCCAATAATCTTGGCTCCACTCTTGAATTGCTCTGGTGCTAGGGAGAAACGCCCAATGGTGGTCCGGGTAGCTCCATGAAGCGGCGGGCTAGACAATCTTGGGACGAAGCTTCGCGACACATAATTACTGCAGAAGATATTATGAGCTTTCCTAATATCCGGGAGGCTGTGGTCGACGGCTTGAGATCACCTGACGGACCGAGTCGCTGCGGATCAATGGACAGGCGCGGTGCTCCGGGGATGGCGAACGACTGATGGGCGAGTCGACGCGCGTGCGGGTGGAGCCGACGTGACGGATAGGCCTGAGGAGTGACGCTGGTGAGCCGATGCCTGGTGGGCATTGGGCGCGGAGTCTCCGAGGGGCGTACGGCGGGAGTATGCGGTCAGGAGAGGTGTCGAGGAGCCTGGCAGGGGCGAGAGGGCGCGTGCAAGTGGAGGGGGCGGCACGACCAGTGATGGAGTCGCGATAGCGGGGATGGCGCGCTGGGGGTGGCTGAGACGGGAGGTAGGAGCTGAGGGGATCGGACGTATGGGGCTGCGTGTGCGGCGAGGAGGGGGAGGAGGGGCGTGCGGATAGTGACGGGTGAGTCGAGGCGTGCACGCG]




>consensus_524#0
GAACTTCAGACACAGGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCA
AATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCGGCTCCNCGGCC
NGCGCGGNACGCCCCCCGCCCAGGGCGAGGCTCCATGGTGGTACGCGCGCGCGCCTACGA
CGACCAGCTCATCACCAGCGTCGTAGCTACCCAATAATCTTGGCTCCACTCTTGAATTGC
TCTGGTGCTAGGGAGAAACGCCCAATGGTGGTCCGGGTAGCTCCATGAAGCGGCGGGCTA
GACAATCTTGGGACGAAGCTTCGCGACACATAATTACTGCAGAAGATATTATGAGCTTTC
CTAATATCCGGGAGGCTGTGGTCGACGGCTTGAGATCACCTGACGGACCGAGTCGCTGCG
GATCAATGGACAGGCGCGGTGCTCCGGGGATGGCGAACGACTGATGGGCGAGTCGACGCG
CGTGCGGGTGGAGCCGACGTGACGGATAGGCCTGAGGAGTGACGCTGGTGAGCCGATGCC
TGGTGGGCATTGGGCGCGGAGTCTCCGAGGGGCGTACGGCGGGAGTATGCGGTCAGGAGA
GGTGTCGAGGAGCCTGGCAGGGGCGAGAGGGCGCGTGCAAGTGGAGGGGGCGGCACGACC
AGTGATGGAGTCGCGATAGCGGGGATGGCGCGCTGGGGGTGGCTGAGACGGGAGGTAGGA
GCTGAGGGGATCGGACGTATGGGGCTGCGTGTGCGGCGAGGAGGGGGAGGAGGGGCGTGC
GGATAGTGACGGGTGAGTCGAGGCGTGCACGCG

consensusID : consensus_524#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [GGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCAAATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCAGCTCCCCGCCCCCCGCCCCCCGCCCCCCGCCCGCCGTTCGTCTCCATGGTCGTCCGCGCCGGCGCCTACGACGACGAGCTCATCAAAACCGCCGTAAAAACCCAATAATCTTCAATCCAGTCTTGAATTGTTCTGGTGCTTGGGAGAAACGCCCAATGGTTTTCCGGCTAGCTCCATGAAGCGGTGGGCTAGACAATCTTGGTTCGAAGCTTCACCACTTCTAATTACTACATTTGATATTAGGTTCTTTCCTAATATTCGTGTTTTTTTTGCTCTTGTGCTTGGGATTTCATTAAAAACCGAGTCATTGTGGATTAATTTAAAACGGTGGCGTCCCC]

[+] EMBL CB636217             [GGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCAAATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCAGCTCCCCGCCCCCCGCCCCCCGCCCCCCGCCCGCCGTTCGTCTCCATGGTCGTCCGCGCCGGCGCCTACGACGACGAGCTCATCAAAACCGCCGTAAAAACCCAATAATCTTCAATCCAGTCTTGAATTGTTCTGGTGCTTGGGAGAAACGCCCAATGGTTTTCCGGCTAGCTCCATGAAGCGGTGGGCTAGACAATCTTGGTTCGAAGCTTCACCACTTCTAATTACTACATTTGATATTAGGTTCTTTCCTAATATTCGTGTTTTTTTTGCTCTTGTGCTTGGGATTTCATTAAAAACCGAGTCATTGTGGATTAATTTAAAACGGTGGCGTCCCC]




>consensus_524#1
GGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCAAATCCTCTGTCCTT
CCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCAGCTCCCCGCCCCCCGCCCCCCGCCC
CCCGCCCGCCGTTCGTCTCCATGGTCGTCCGCGCCGGCGCCTACGACGACGAGCTCATCA
AAACCGCCGTAAAAACCCAATAATCTTCAATCCAGTCTTGAATTGTTCTGGTGCTTGGGA
GAAACGCCCAATGGTTTTCCGGCTAGCTCCATGAAGCGGTGGGCTAGACAATCTTGGTTC
GAAGCTTCACCACTTCTAATTACTACATTTGATATTAGGTTCTTTCCTAATATTCGTGTT
TTTTTTGCTCTTGTGCTTGGGATTTCATTAAAAACCGAGTCATTGTGGATTAATTTAAAA
CGGTGGCGTCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_524#0      GAACTTCAGACACAGGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCA 60
consensus_524#1      --------------GGTTGAGAAAGAAAAGAAGCAGCAATGTCATCTGCAACTCTGCTCA 46
                                   **********************************************

consensus_524#0      AATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCGGCTCCNCGGCC 120
consensus_524#1      AATCCTCTGTCCTTCCCAAGAAGGCCGCCGAGTGGGGCGGCACGCGTCAGCTCCCCGCCC 106
                     ************************************************ ***** ** **

consensus_524#0      NGCGCGGNACGCCCCCCGCCCAGGGCGAGGCTCCATGGTGGTACGCGCGCGCGCCTACGA 180
consensus_524#1      CCCGCCCCCCGCCCCCCGCCCGCCGTTCGTCTCCATGGTCGTCCGCGCCGGCGCCTACGA 166
                       ***    ************   *   * ********* ** *****  **********

consensus_524#0      CGACCAGCTCATCACCAGCGTCGTAGCTACCCAATAATCTTGGCTCCACTCTTGAATTGC 240
consensus_524#1      CGACGAGCTCATCAAAACCGCCGTAAAAACCCAATAATCTTCAATCCAGTCTTGAATTGT 226
                     **** *********  * ** ****   *************   **** ********** 

consensus_524#0      TCTGGTGCTAGGGAGAAACGCCCAATGGTGGTCCGGGTAGCTCCATGAAGCGGCGGGCTA 300
consensus_524#1      TCTGGTGCTTGGGAGAAACGCCCAATGGTTTTCCGGCTAGCTCCATGAAGCGGTGGGCTA 286
                     ********* *******************  ***** **************** ******

consensus_524#0      GACAATCTTGGGACGAAGCTTCGCGACACATAATTACTGCAGAAGATATTATGAGCTTTC 360
consensus_524#1      GACAATCTTGGTTCGAAGCTTCACCACTTCTAATTACTACATTTGATATTAGGTTCTTTC 346
                     ***********  ********* * **   ******** **   ******* *  *****

consensus_524#0      CTAATATCCGGGAGGCTGTGGTCGACG-GCTTGAGATCACCTGACGGACCGAGTCGCTGC 419
consensus_524#1      CTAATATTCGTGTTTTTTTTGCTCTTGTGCTTGGGATTTCATTAAAAACCGAGTCATTGT 406
                     ******* ** *    * * *     * ***** ***  * * *   ********  ** 

consensus_524#0      GGATCAATGGACAGGCGCGGTGCTCCGGGGATGGCGAACGACTGATGGGCGAGTCGACGC 479
consensus_524#1      GGATTAATTTAAAACGGTGGCGTCCCC--------------------------------- 433
                     **** ***  * *   * ** *  **                                  

consensus_524#0      GCGTGCGGGTGGAGCCGACGTGACGGATAGGCCTGAGGAGTGACGCTGGTGAGCCGATGC 539
consensus_524#1      ------------------------------------------------------------
                                                                                 

consensus_524#0      CTGGTGGGCATTGGGCGCGGAGTCTCCGAGGGGCGTACGGCGGGAGTATGCGGTCAGGAG 599
consensus_524#1      ------------------------------------------------------------
                                                                                 

consensus_524#0      AGGTGTCGAGGAGCCTGGCAGGGGCGAGAGGGCGCGTGCAAGTGGAGGGGGCGGCACGAC 659
consensus_524#1      ------------------------------------------------------------
                                                                                 

consensus_524#0      CAGTGATGGAGTCGCGATAGCGGGGATGGCGCGCTGGGGGTGGCTGAGACGGGAGGTAGG 719
consensus_524#1      ------------------------------------------------------------
                                                                                 

consensus_524#0      AGCTGAGGGGATCGGACGTATGGGGCTGCGTGTGCGGCGAGGAGGGGGAGGAGGGGCGTG 779
consensus_524#1      ------------------------------------------------------------
                                                                                 

consensus_524#0      CGGATAGTGACGGGTGAGTCGAGGCGTGCACGCG 813
consensus_524#1      ----------------------------------