These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1851 fasta sequence [CCTCTTCCCAGACTCCCATGGCAGCCACGCCCACCACGTCCGCCTCCGCGGCGGCCACCACTCGCCTCTTCCTACCTACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTTCGCGCACCATCGCCCGCCGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCGCCGCGGGCGAGCTTGGCGGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCATAGTCTCCATAGTAGGCGACGGGAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGGTTATGCGCCACACGGCTAATAGGATGAAGTGGGTTGACGAAGGATTTGAAATGCTTGTCTTCACAGACAAGTCAATTGGCCATGATGAACTTAGGAAAGAGCTGGCACAGTGTGATATGCTAGTCAATGTTGCAATAACGAGTCAGGAGACTGTTCAGTGGCTTATAAATAACAGTGAGGACATTCCCAATATAATCTGCTTTCAATCATCTCCAACCTTAGAAAACAAGTTAGGTGGCAGGTATGTTCAATACACTGGACGTCAGGACATGTTTTGCAAGCTAACAAATATTGGAGAAACAGGTGGCATGAAGGAATCTGCTGAAGTCCTTAAGGCTGTATCTAATGCCTGGGAAAGGCATAATTCAGATGACATTAGATTTTGCTTACTTGTTGTGGTTAATGCGTACATAAGACCTGTTGATATGCTGCAAAACCTTAGGGCAAAAGGTCTGTCTACCCTAAGCTGTATGATAAGAAATTGTGGTCCTCAGATACTGAATTGTCTGTTCGATCCCAACTGTAGGAAAGCCCTTCAGTGTTTAAATTCATGTTCTCCAACTGATCAAGTTTGCAACTATCGCTGCATTGCGTCGTATGAGAGTCCGCATCTGGAGGCCTTTTCTTTATGTGTTTTGCAGAAGAACAATTGTCTTGATCTCAATGCCGAGATCCCCAGTAAGCCCTCTGTACCCCCACTAACCATGTTCAGAGAACAAATGCTAAGCCATGAACTTGCAGAAGACATGTTTGTTGGATGGTTGGACAACTTGGAATGGAGTTGGAGAGTTGTAGCTGGACAAAATCCAGCATATGATCAATTCCCATGTCAGTATCAATTATTTTACAGGGGAAAAGCTAAAGGTTCATTTTGGTATGAGCCAATTTTTCAAGTCAGAACCCTGGAAGGGGAACTGGTTTGGAGGCGCAGAAAGTACCGAGTAAGAAGAGCTCTCATCCCTGGTACATTTTACTTCAGTGTGCTGGATAATGGTGTGGTTTCAAAGGAGTTTTGGACAATCGTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGAGCCGCTCAGGCCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTCCAGATTTGGATGACCCAAGACTGGCATCTGCTTTAGATAAGTGTGGGATCAAGAAGTGGGAGCTTTATATGGTTGATAACTGTTCCTGCACTGGTGCACCTTTGGGAACTCCTGGAGATGCAAAGCTGCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTTGCAGACAGGGTGATGTGTTCTAACGGCACAGAAGGTTCCCAGATGACTTGCACGGTTGCACCTCTAAGTCAGGCAGTGTGGACTGTGGTCTGTGGATACTGCGGACTTGATCCAGTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAAATATGTAAGAATAACATTCAGGTATCGCTGAAAAGAGTAATTATGTAAAATGAGCGGTTCTTTATCTTATATAGTTATCATCTAATGTCATGCCTT] [+] EMBL AK066768 [CCTCTTCCCAGACTCCCATGGCAGCCACGCCCACCACGTCCGCCTCCGCGGCGGCCACCACTCGCCTCTTCCTACCTACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTTCGCGCACCATCGCCCGCCGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCGCCGCGGGCGAGCTTGGCGGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCATAGTCTCCATAGTAGGCGACGGGAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGGTTATGCGCCACACGGCTAATAGGATGAAGTGGGTTGACGAAGGATTTGAAATGCTTGTCTTCACAGACAAGTCAATTGGCCATGATGAACTTAGGAAAGAGCTGGCACAGTGTGATATGCTAGTCAATGTTGCAATAACGAGTCAGGAGACTGTTCAGTGGCTTATAAATAACAGTGAGGACATTCCCAATATAATCTGCTTTCAATCATCTCCAACCTTAGAAAACAAGTTAGGTGGCAGGTATGTTCAATACACTGGACGTCAGGACATGTTTTGCAAGCTAACAAATATTGGAGAAACAGGTGGCATGAAGGAATCTGCTGAAGTCCTTAAGGCTGTATCTAATGCCTGGGAAAGGCATAATTCAGATGACATTAGATTTTGCTTACTTGTTGTGGTTAATGCGTACATAAGACCTGTTGATATGCTGCAAAACCTTAGGGCAAAAGGTCTGTCTACCCTAAGCTGTATGATAAGAAATTGTGGTCCTCAGATACTGAATTGTCTGTTCGATCCCAACTGTAGGAAAGCCCTTCAGTGTTTAAATTCATGTTCTCCAACTGATCAAGTTTGCAACTATCGCTGCATTGCGTCGTATGAGAGTCCGCATCTGGAGGCCTTTTCTTTATGTGTTTTGCAGAAGAACAATTGTCTTGATCTCAATGCCGAGATCCCCAGTAAGCCCTCTGTACCCCCACTAACCATGTTCAGAGAACAAATGCTAAGCCATGAACTTGCAGAAGACATGTTTGTTGGATGGTTGGACAACTTGGAATGGAGTTGGAGAGTTGTAGCTGGACAAAATCCAGCATATGATCAATTCCCATGTCAGTATCAATTATTTTACAGGGGAAAAGCTAAAGGTTCATTTTGGTATGAGCCAATTTTTCAAGTCAGAACCCTGGAAGGGGAACTGGTTTGGAGGCGCAGAAAGTACCGAGTAAGAAGAGCTCTCATCCCTGGTACATTTTACTTCAGTGTGCTGGATAATGGTGTGGTTTCAAAGGAGTTTTGGACAATCGTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGAGCCGCTCAGGCCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTCCAGATTTGGATGACCCAAGACTGGCATCTGCTTTAGATAAGTGTGGGATCAAGAAGTGGGAGCTTTATATGGTTGATAACTGTTCCTGCACTGGTGCACCTTTGGGAACTCCTGGAGATGCAAAGCTGCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTTGCAGACAGGGTGATGTGTTCTAACGGCACAGAAGGTTCCCAGATGACTTGCACGGTTGCACCTCTAAGTCAGGCAGTGTGGACTGTGGTCTGTGGATACTGCGGACTTGATCCAGTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAAATATGTAAGAATAACATTCAGGTATCGCTGAAAAGAGTAATTATGTAAAATGAGCGGTTCTTTATCTTATATAGTTATCATCTAATGTCATGCCTT] consensusID : consensus_5244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CCACCACTCGCCTCTTCCTACCTACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTTCGCGCACCATCGCCCGCCGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCGCCGCGGGCGAGCTTGGCGGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCATAGTCTCCATAGTAGGCGACGGGAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGGTTATGCGCCACACGGTATGCTTCCGCTCTGAGCTCTGAACCTAGCACCGATTCACCGCTATCAAATGCTAGTGCGGAGTCGCAGTGCAAAGGAGAACTCGACAGTATTGCAATAAGCCGATTCGGAATATGCTGATAACTGAAGAACTTCTATAGATAGAATGTTGTAACGGCAAAGCACATGCAAATACGCGATTGGTCAATTGCACACTCACACAGAACCATTTCGCACGCTCACTTGGAGAACTAGTTGTAGAAGTATTCAAGTATATGTGATTATATGGGCACGAACATTCTANATTTCTGGTACCCCNAAATGTGTTAGTACTTAGTACTTGATTATNATTTTGTATCGCTT] [+] EMBL CA754388 [CCACCACTCGCCTCTTCCTACCTACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTTCGCGCACCATCGCCCGCCGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCGCCGCGGGCGAGCTTGGCGGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCATAGTCTCCATAGTAGGCGACGGGAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGGTTATGCGCCACACGGTATGCTTCCGCTCTGAGCTCTGAACCTAGCACCGATTCACCGCTATCAAATGCTAGTGCGGAGTCGCAGTGCAAAGGAGAACTCGACAGTATTGCAATAAGCCGATTCGGAATATGCTGATAACTGAAGAACTTCTATAGATAGAATGTTGTAACGGCAAAGCACATGCAAATACGCGATTGGTCAATTGCACACTCACACAGAACCATTTCGCACGCTCACTTGGAGAACTAGTTGTAGAAGTATTCAAGTATATGTGATTATATGGGCACGAACATTCTANATTTCTGGTACCCCNAAATGTGTTAGTACTTAGTACTTGATTATNATTTTGTATCGCTT] consensusID : consensus_5244#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CACATCTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGAGCCGCTCAGCCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTCCAGATTTGGATGACCCAAGACTGGCATCTGCTTTAGATAAGTGTGGGATCAAGAAGTGGGAGCTTTATATGGTTGATAACTGTTCCTGCACTGGTGCACCTTTGGGAACTCCTGGAGATGCAAGCTGCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTTGCAGACAGGGTGATGTGTTCTAACGGCACAGAAGGTTCCCAGATGACTTGCACGGTTGCACCTCTAAGTCAGGCACGTGTGGACTGTGGTCTGTGGATACTGCGGACTTGATCCAGTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAATATGTAAGAATAACATTCAGGTATCGCTGAAAAGAGTAATTATGTAAAATGAGCGGTTCTAATGTCATGCCTTTTTTACTGTCAAAAAA] [+] EMBL BI801016 [CACATCTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGAGCCGCTCAGCCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTCCAGATTTGGATGACCCAAGACTGGCATCTGCTTTAGATAAGTGTGGGATCAAGAAGTGGGAGCTTTATATGGTTGATAACTGTTCCTGCACTGGTGCACCTTTGGGAACTCCTGGAGATGCAAGCTGCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTTGCAGACAGGGTGATGTGTTCTAACGGCACAGAAGGTTCCCAGATGACTTGCACGGTTGCACCTCTAAGTCAGGCACGTGTGGACTGTGGTCTGTGGATACTGCGGACTTGATCCAGTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAATATGTAAGAATAACATTCAGGTATCGCTGAAAAGAGTAATTATGTAAAATGAGCGGTTCTAATGTCATGCCTTTTTTACTGTCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5244#0 CCTCTTCCCAGACTCCCATGGCAGCCACGCCCACCACGTCCGCCTCCGCGGCGGCCACCA 60 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 CTCGCCTCTTCCTACCTACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTT 120 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 CGCGCACCATCGCCCGCCGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCG 180 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 CCGCGGGCGAGCTTGGCGGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCA 240 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 TAGTCTCCATAGTAGGCGACGGGAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGG 300 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 TTATGCGCCACACGGCTAATAGGATGAAGTGGGTTGACGAAGGATTTGAAATGCTTGTCT 360 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 TCACAGACAAGTCAATTGGCCATGATGAACTTAGGAAAGAGCTGGCACAGTGTGATATGC 420 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 TAGTCAATGTTGCAATAACGAGTCAGGAGACTGTTCAGTGGCTTATAAATAACAGTGAGG 480 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 ACATTCCCAATATAATCTGCTTTCAATCATCTCCAACCTTAGAAAACAAGTTAGGTGGCA 540 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 GGTATGTTCAATACACTGGACGTCAGGACATGTTTTGCAAGCTAACAAATATTGGAGAAA 600 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 CAGGTGGCATGAAGGAATCTGCTGAAGTCCTTAAGGCTGTATCTAATGCCTGGGAAAGGC 660 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 ATAATTCAGATGACATTAGATTTTGCTTACTTGTTGTGGTTAATGCGTACATAAGACCTG 720 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 TTGATATGCTGCAAAACCTTAGGGCAAAAGGTCTGTCTACCCTAAGCTGTATGATAAGAA 780 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 ATTGTGGTCCTCAGATACTGAATTGTCTGTTCGATCCCAACTGTAGGAAAGCCCTTCAGT 840 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 GTTTAAATTCATGTTCTCCAACTGATCAAGTTTGCAACTATCGCTGCATTGCGTCGTATG 900 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 AGAGTCCGCATCTGGAGGCCTTTTCTTTATGTGTTTTGCAGAAGAACAATTGTCTTGATC 960 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 TCAATGCCGAGATCCCCAGTAAGCCCTCTGTACCCCCACTAACCATGTTCAGAGAACAAA 1020 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 TGCTAAGCCATGAACTTGCAGAAGACATGTTTGTTGGATGGTTGGACAACTTGGAATGGA 1080 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 GTTGGAGAGTTGTAGCTGGACAAAATCCAGCATATGATCAATTCCCATGTCAGTATCAAT 1140 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 TATTTTACAGGGGAAAAGCTAAAGGTTCATTTTGGTATGAGCCAATTTTTCAAGTCAGAA 1200 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 CCCTGGAAGGGGAACTGGTTTGGAGGCGCAGAAAGTACCGAGTAAGAAGAGCTCTCATCC 1260 consensus_5244#2 ------------------------------------------------------------ consensus_5244#1 ------------------------------------------------------------ consensus_5244#0 CTGGTACATTTTACTTCAGTGTGCTGGATAATGGTGTGGTTTCAAAGGAGTTTTGGACAA 1320 consensus_5244#2 ---------------------------------------------------------CAC 3 consensus_5244#1 -------------------------------CCACCACTCGCCTCTTCCTACCTACTCGC 29 * consensus_5244#0 TCGTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGA--GCCGCTCA 1378 consensus_5244#2 ATCTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGA--GCCGCTCA 61 consensus_5244#1 CGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTTCGCGCACCATCGCCCGCCGCT-A 88 * * * * *** * * * *** * ** * ****** * consensus_5244#0 GGCCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTC-CAG 1437 consensus_5244#2 G-CCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTC-CAG 119 consensus_5244#1 CTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCGCCGCGGGCGAGCTTGGCGGCGG 148 *** ** * * ** ** ** ** * * * * * * * * consensus_5244#0 ATTTGGATGACCCAAGACTGGCATCTGC----TTTAGATAAGTGTGGGATCAAGAAGTGG 1493 consensus_5244#2 ATTTGGATGACCCAAGACTGGCATCTGC----TTTAGATAAGTGTGGGATCAAGAAGTGG 175 consensus_5244#1 GGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCATAGTCTCCATAGTAGGCGACGG 208 ** ** *** ** ** * ** * *** * * * ** consensus_5244#0 GAGCTTTATATGGTTGATAACTGTTCCT------GCACTGGTGCACCTTTGGGAA--CTC 1545 consensus_5244#2 GAGCTTTATATGGTTGATAACTGTTCCT------GCACTGGTGCACCTTTGGGAA--CTC 227 consensus_5244#1 GAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGGTTATGCGCCACACGGTATGCTT 268 **** * * * *** ** * * *** ** ** * ** consensus_5244#0 CTG----GAGATGCAAAGCT-GCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTT 1600 consensus_5244#2 CTG----GAGATGCAA-GCT-GCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTT 281 consensus_5244#1 CCGCTCTGAGCTCTGAACCTAGCACCGATTCACCGCTATCAAATGCTAGTGCGGAGTCGC 328 * * *** * * ** *** * *** * * * ** * consensus_5244#0 GCAGACAGGGTGATGTGTTC--TAACGGCACAGAAGGTTCCCAGATGACTTGC--ACGGT 1656 consensus_5244#2 GCAGACAGGGTGATGTGTTC--TAACGGCACAGAAGGTTCCCAGATGACTTGC--ACGGT 337 consensus_5244#1 AGTGCAAAGGAGAACTCGACAGTATTGCAATAAGCCGATTCGGAATATGCTGATAACTGA 388 * * ** ** * * ** * * * * * * ** ** ** * consensus_5244#0 TGCACCTCTAAGTCAGGCA-GTGTGGACTGTGGTCTGTGGATAC-TGCGGACTTGATCCA 1714 consensus_5244#2 TGCACCTCTAAGTCAGGCACGTGTGGACTGTGGTCTGTGGATAC-TGCGGACTTGATCCA 396 consensus_5244#1 AGAACTTCTATAGATAGAATGTTGTAACGGCAAAGCACATGCAAATACGCGATTGGTCAA 448 * ** **** * * ** ** * * * ** *** ** * consensus_5244#0 GTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAAATAT-GTAAGAATAACATT 1773 consensus_5244#2 GTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAA-TAT-GTAAGAATAACATT 454 consensus_5244#1 TTGCACACTCACACAGAACCATTTCGCACGCTCACTTGGAGAACTAGTTGTAGAAGTATT 508 **** * ** ** * * * ** * * * ** * * *** consensus_5244#0 CAGGTAT---CGCTGAAAAGAGTA--ATTATGTAAAATGAGCGGTTCT-----TTATCTT 1823 consensus_5244#2 CAGGTAT---CGCTGAAAAGAGTA--ATTATGTAAAATGAGCGGTTCT-----A-ATGTC 503 consensus_5244#1 CAAGTATATGTGATTATATGGGCACGAACATTCTANATTTCTGGTACCCCNAAATGTGTT 568 ** **** * * * * * * * * ** * ** *** * * * consensus_5244#0 ATATAGTTATCATCTAATGTCATGCCTT------- 1851 consensus_5244#2 ATGCCTTT----TTTACTGTCAAAAAA-------- 526 consensus_5244#1 AGTACTTAGTACTTGATTATNATTTTGTATCGCTT 603 * * * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||