cluster # 5248

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5248 cluster # 5248 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5248#0 length = 749 sequences # 1

consensus_5248#1 length = 454 sequences # 1
consensus_5248#2 length = 385 sequences # 1

consensusID : consensus_5248#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 749
fasta sequence

                              [ATGTTCGCGGCGGCGCGGCGGGGTGGTTCGTCTGCGAGATCAGTACAATCTCCTTCACTCCTGCGATCCGATCGCAAGACGCGATCGGATGTGGATATAATTTGACAGGGATTCAGAGAATTAAGATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGTTGATGCTCGTTATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTCCATTTCCTGCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGGTGGAATTTTCAGAGTCTGTTGGACAGCCGATCCATCAGCTGGATCAGCTCTGTGGGCAATGCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCATCTGGTCCACCCACACCCCCAGGGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATGGCTGGTTGGTCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAGAGGACGGGCGTCACATGCTTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCATGATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTCAATGGAAATGCTGTGTGTTGCTGCATGAGGTGCTTCCATTTACTGTGAGGATACCAAGTGGATGTGATTAAATAAGTTTAAGAAATACCCCTG]

[+] EMBL AK074024             [ATGTTCGCGGCGGCGCGGCGGGGTGGTTCGTCTGCGAGATCAGTACAATCTCCTTCACTCCTGCGATCCGATCGCAAGACGCGATCGGATGTGGATATAATTTGACAGGGATTCAGAGAATTAAGATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGTTGATGCTCGTTATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTCCATTTCCTGCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGGTGGAATTTTCAGAGTCTGTTGGACAGCCGATCCATCAGCTGGATCAGCTCTGTGGGCAATGCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCATCTGGTCCACCCACACCCCCAGGGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATGGCTGGTTGGTCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAGAGGACGGGCGTCACATGCTTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCATGATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTCAATGGAAATGCTGTGTGTTGCTGCATGAGGTGCTTCCATTTACTGTGAGGATACCAAGTGGATGTGATTAAATAAGTTTAAGAAATACCCCTG]




>consensus_5248#0
ATGTTCGCGGCGGCGCGGCGGGGTGGTTCGTCTGCGAGATCAGTACAATCTCCTTCACTC
CTGCGATCCGATCGCAAGACGCGATCGGATGTGGATATAATTTGACAGGGATTCAGAGAA
TTAAGATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGTTGATGCTCGTT
ATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTCCA
TTTCCTGCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGG
TGGAATTTTCAGAGTCTGTTGGACAGCCGATCCATCAGCTGGATCAGCTCTGTGGGCAAT
GCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCATCTGGTCCACCCACACCCCCAGG
GTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATGGCTGGTTGGTCA
TAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAGAGG
ACGGGCGTCACATGCTTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCATGATG
GATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTCAATG
GAAATGCTGTGTGTTGCTGCATGAGGTGCTTCCATTTACTGTGAGGATACCAAGTGGATG
TGATTAAATAAGTTTAAGAAATACCCCTG

consensusID : consensus_5248#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [GCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGGTGGAATTTTCAGAGTCTGTTGGACAGCTGATCCATCAGCTGGATCAGCTCTGTGGGCAATGCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCTTTTGGTCCACCCACCACCCCCAGGGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATGGCTGGTTGGTCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAGAGGACGGGCGTCACATGCTTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCATGATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTCAATGGAAATGCTGTGTGTTGCTGCAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF319875             [GCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGGTGGAATTTTCAGAGTCTGTTGGACAGCTGATCCATCAGCTGGATCAGCTCTGTGGGCAATGCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCTTTTGGTCCACCCACCACCCCCAGGGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATGGCTGGTTGGTCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAGAGGACGGGCGTCACATGCTTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCATGATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTCAATGGAAATGCTGTGTGTTGCTGCAAAAAAAAAAAAAAAAAAA]




>consensus_5248#1
GCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGGTGGAAT
TTTCAGAGTCTGTTGGACAGCTGATCCATCAGCTGGATCAGCTCTGTGGGCAATGCCTCC
GGTCCTTTTGTGGTGTTTCCTGTCCGAACCTTTTGGTCCACCCACCACCCCCAGGGTAAT
CATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATGGCTGGTTGGTCATAGAC
CAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAGAGGACGGG
CGTCACATGCTTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCATGATGGATTA
GTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTCAATGGAAAT
GCTGTGTGTTGCTGCAAAAAAAAAAAAAAAAAAA

consensusID : consensus_5248#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [TTTTAAGAGTAATGCTGTGTTATGCGTTCTTAAGTCCTTGATCCCTAATCCTTGTTGTTTTTGCAGCAGTAGTCTTCCAGGCTACTAGGCAGTGCCCTCAATTTTGGTGATTTTATTTCCTGTTAGCTCTAACATTCCTGTTTATTCACTTCTTATTGACAGTTCTTGACCTTTTCTATGTACAGATCAGTACAATCTCCTTCACTCCTGCGATCCGATCGCAAGACGCGATCGGATGTGGATATAATTTGACAGGGATTCAGAGAATTAAGATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGTTGATGCTCGTTATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTC]

[+] EMBL CF319874             [TTTTAAGAGTAATGCTGTGTTATGCGTTCTTAAGTCCTTGATCCCTAATCCTTGTTGTTTTTGCAGCAGTAGTCTTCCAGGCTACTAGGCAGTGCCCTCAATTTTGGTGATTTTATTTCCTGTTAGCTCTAACATTCCTGTTTATTCACTTCTTATTGACAGTTCTTGACCTTTTCTATGTACAGATCAGTACAATCTCCTTCACTCCTGCGATCCGATCGCAAGACGCGATCGGATGTGGATATAATTTGACAGGGATTCAGAGAATTAAGATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGTTGATGCTCGTTATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTC]




>consensus_5248#2
TTTTAAGAGTAATGCTGTGTTATGCGTTCTTAAGTCCTTGATCCCTAATCCTTGTTGTTT
TTGCAGCAGTAGTCTTCCAGGCTACTAGGCAGTGCCCTCAATTTTGGTGATTTTATTTCC
TGTTAGCTCTAACATTCCTGTTTATTCACTTCTTATTGACAGTTCTTGACCTTTTCTATG
TACAGATCAGTACAATCTCCTTCACTCCTGCGATCCGATCGCAAGACGCGATCGGATGTG
GATATAATTTGACAGGGATTCAGAGAATTAAGATGAATGGTGCTTTATGGATTCCTATTC
TGCCCCCTCCAGTTGTTGATGCTCGTTATCAGGGACTGTGCCTACAGTGTGGCCGCCGCA
TTAAGGGCCGATCTAACCTCTGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5248#0      ATGTTCGCGGCGGCGCGGCGGGGTGGTTCGTCTGCGAGATCAGTACAATCTCCTTCACTC 60
consensus_5248#1      ------------------------------------------------------------
consensus_5248#2      ------------------------------------------------------------
                                                                                  

consensus_5248#0      CTGCGATCCGATCGCAAGACGCGATCGGATGTGGATATAATTTGACAGGGATTCAGAGAA 120
consensus_5248#1      ------------------------------------------------------------
consensus_5248#2      ------------------------------------------------------------
                                                                                  

consensus_5248#0      TTAAGATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGTTGATGCTCGTT 180
consensus_5248#1      ------------------------------------------------------------
consensus_5248#2      ------------------------------------------------------------
                                                                                  

consensus_5248#0      ATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTCCA 240
consensus_5248#1      ------------------------------------------------------------
consensus_5248#2      ------------------------------------------------------------
                                                                                  

consensus_5248#0      TTTCCTGCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGG 300
consensus_5248#1      ------GCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGG 54
consensus_5248#2      --------------TTTTAAGAGTAATGCTGTGTTATGCGTTCTTAAGTCCTTGATCC-- 44
                                    **    * * *   * * * ** ***   *   *  *   * *   

consensus_5248#0      TGGAATTTTCAGAGTCTGTTGGACAGCCGATCCATCAGCTGGATCAGCTCTGTGGGCAAT 360
consensus_5248#1      TGGAATTTTCAGAGTCTGTTGGACAGCTGATCCATCAGCTGGATCAGCTCTGTGGGCAAT 114
consensus_5248#2      -CTAATCCTTGTTGTTTTTGCAGCAG-TAGTCTTCCAGGCTACTAGGCAGTGCCCTCAAT 102
                         ***  *    ** * *    ***    **   ***     *  **  **    ****

consensus_5248#0      GCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCATCTGGTCCACCCAC-ACCCCCAG 419
consensus_5248#1      GCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCTTTTGGTCCACCCACCACCCCCAG 174
consensus_5248#2      ---TTTGGTGATTTTATT-TCCTGTTAGCTCTAACATTCCTGTTTATTCACTTCTTATTG 158
                         *  ***  **** *  *  *    *  * ***  *   **  *  ***  *     *

consensus_5248#0      GGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATG--GCTGGTTGG 477
consensus_5248#1      GGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATG--GCTGGTTGG 232
consensus_5248#2      ACAGTTCTTGACCTTTTCTATGTACAGATCAGTACAATCTCCTTCACTCCTGCGATCCGA 218
                           ** **          **     ** * **        ** * *   **     * 

consensus_5248#0      TCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAG 537
consensus_5248#1      TCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAG 292
consensus_5248#2      TCGCAAGACGCGATCGGATGTGGATATAATTTGAC--AGGGATTCAGAGAATTA----AG 272
                      **  *   *  ** * * *     *  ****** *  **  *****   ***      **

consensus_5248#0      AGGACGGGCGTCACATGC-TTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCAT 596
consensus_5248#1      AGGACGGGCGTCACATGC-TTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCAT 351
consensus_5248#2      ATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGT---TGATGCTCGTTAT 329
                      * **  ** *    ***  ********  ** **  ** * **    **  * * *  **

consensus_5248#0      GATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTC 656
consensus_5248#1      GATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTC 411
consensus_5248#2      CAGGGACTG---TGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTC-TGTTC 385
                       * *** *       * * * **    *   *   *   *   * * ***     *****

consensus_5248#0      AATGGAAATGCTGTGTGTTGCTGCATGAGGTGCTTCCATTTACTGTGAGGATACCAAGTG 716
consensus_5248#1      AATGGAAATGCTGTGTGTTGCTGCAAAAAAAAAAAAAAAAAAA----------------- 454
consensus_5248#2      ------------------------------------------------------------
                                                                                  

consensus_5248#0      GATGTGATTAAATAAGTTTAAGAAATACCCCTG 749
consensus_5248#1      ---------------------------------
consensus_5248#2      ---------------------------------