These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1305 fasta sequence [AGAGGCTCCAACGGTCACATTATCCTCGCTGACTCCGCCGCGCGCCGCGTGCTCGCCTTCCTCCCCCTCGCGCCACCACCGCCGCCGCCGAGTCCTCGTCACCGGAGAGCGAGGGGGTCTCCGCCGTGGTCGCCTGCGCGCTACGCGGCGACGCTGCCGGCTTCCTTCCGCCGGAGTCAACCTTGGGGGTAAGGATTGCTGCAAACAACTCCAGTTTCTGAATAAAGACAGTGCCGATATTAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATTCTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGACGCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACATCACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAACACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGGATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTTCCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATTCTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACACGTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGGTTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGAAGGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTTTCGGTGATGATGTTGATGAACTGAACTTCAGAGTTAAAGGGGCAAACCAACGGGGACGCCGGTTATTGGGCAAATGATGCCATCAGGTTGTCGAACCACAGCAACTCTGTTTCTAGCAGTTTTCTCCATCCCATGGGATTCAGGACTTGTGAGTGCGATTAGCAGATGCGCCTACTTCATCTGGATATTCTGTCGTGTCTGAATTCTGAGCAAATATTCAGATTCCCGTGTTGTGTTGTTGTATGAGAAATCGTCATATACACTTGTTGTATGATAAGTTGATAGCTTCAATTACTTGGTGTAGGACATAACCACCATTCCCCTTTTCTCTTAGAATCTTGATGTAATCTGTACTCCTAAATATGCCAGAACGAGATGAGAAGAGAATTGAATCAAGCGATAGAA] [+] EMBL AK102778 [AGAGGCTCCAACGGTCACATTATCCTCGCTGACTCCGCCGCGCGCCGCGTGCTCGCCTTCCTCCCCCTCGCGCCACCACCGCCGCCGCCGAGTCCTCGTCACCGGAGAGCGAGGGGGTCTCCGCCGTGGTCGCCTGCGCGCTACGCGGCGACGCTGCCGGCTTCCTTCCGCCGGAGTCAACCTTGGGGGTAAGGATTGCTGCAAACAACTCCAGTTTCTGAATAAAGACAGTGCCGATATTAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATTCTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGACGCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACATCACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAACACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGGATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTTCCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATTCTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACACGTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGGTTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGAAGGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTTTCGGTGATGATGTTGATGAACTGAACTTCAGAGTTAAAGGGGCAAACCAACGGGGACGCCGGTTATTGGGCAAATGATGCCATCAGGTTGTCGAACCACAGCAACTCTGTTTCTAGCAGTTTTCTCCATCCCATGGGATTCAGGACTTGTGAGTGCGATTAGCAGATGCGCCTACTTCATCTGGATATTCTGTCGTGTCTGAATTCTGAGCAAATATTCAGATTCCCGTGTTGTGTTGTTGTATGAGAAATCGTCATATACACTTGTTGTATGATAAGTTGATAGCTTCAATTACTTGGTGTAGGACATAACCACCATTCCCCTTTTCTCTTAGAATCTTGATGTAATCTGTACTCCTAAATATGCCAGAACGAGATGAGAAGAGAATTGAATCAAGCGATA ] [+] EMBL AK064327 [ GAGGCTCCAACGGTCACATTATCCTCGCTGACTCCGCCGCGCGCCGCGTGCTCGCCTTCCTCCCCCTCGCGCCACCACCGCCGCCGCCGAGTCCTCGTCACCGGAGAGCGAGGGGGTCTCCGCCGTGGTCGCCTGCGCGCTACGCGGCGACGCTGCCGGCTTCCTTCCGCCGGAGTCAACCTTGGGGGTAAGGATTGCTGCAAACAACTCCAGTTTCTGAATAAAGACAGTGCCGATATTAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATTCTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGACGCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACATCACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAACACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGGATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTTCCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATTCTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACACGTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGGTTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGAAGGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGTAAAATAAATCACTGGATGCTTTCGGTGATGATGTTGATGAACTGAACTTCAGAGTTAAAGGGGCAAACCAACGGGGACGCCGGTTATTGGGCAAATGATGCCATCAGGTTGTCGAACCACAGCAACTCTGTTTCTAGCAGTTTTCTCCATCCCATGGGATTCAGGACTTGTGAGTGCGATTAGCAGATGCGCCTACTTCATCTGGATATTCTGTCGTGTCTGAATTCTGAGCAAATATTCAGATTCCCGTGTTGTGTTGTTGTATGAGAAATCGTCATATACACTTGTTGTATGATAAGTTGATAGCTTCAATTACTTGGTGTAGGACATAACCACCATTCCCCTTTTCTCTTAGAATCTTGATGTAATCTGTACTCCTAAATATGCCAGAACGAGATGAGAAGAGAATTGAATCAAGCGATAGAA] consensusID : consensus_5250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [CCCTTGTGTGCTAGGGTTGATGCGCGCGTGCGATGGCTTTGGTTGGTGCGGATTTAGGTATCCTTAGTTTGATACCAACAACTTGATAGATTGCCGCAAACAACTCCAGTTTCTGAATAAAGATAGTGCCGATATTAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATTCTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGACGCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACCTCACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAACACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGGATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTTCCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATTCTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACACGTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGGTTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGAANGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTTT] [+] EMBL CA767252 [CCCTTGTGTGCTAGGGTTGATGCGCGCGTGCGATGGCTTTGGTTGGTGCGGATTTAGGTATCCTTAGTTTGATACCAACAACTTGATAGATTGCCGCAAACAACTCCAGTTTCTGAATAAAGATAGTGCCGATATTAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATTCTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGACGCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACCTCACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAACACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGGATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTTCCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATTCTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACACGTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGGTTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGAANGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5250#0 AGAGGCTCCAACGGTCACATTATCCTCGCTGACTCCGCCGCGCGCCGCGTGCTCGCCTTC 60 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 CTCCCCCTCGCGCCACCACCGCCGCCGCCGAGTCCTCGTCACCGGAGAGCGAGGGGGTCT 120 consensus_5250#1 -----------------------------------------CCCTTGTGTGCTAGGGTTG 19 ** * * * **** consensus_5250#0 CCGCCGTGGTCGCCTGCGCGCTACGCGGCGACGCTGCCGGCTTCCTTCCGCCGGAGTCAA 180 consensus_5250#1 ATGC-GCGCGTGCGATGGCTTTGGTTGGTGCGGATTTAGGTATCCTTAGTTTGATACCAA 78 ** * * ** ** * ** * * * ** ***** * *** consensus_5250#0 CCTTGGGGGTAAGGATTGCTGCAAACAACTCCAGTTTCTGAATAAAGACAGTGCCGATAT 240 consensus_5250#1 CAACTTG---ATAGATTGCCGCAAACAACTCCAGTTTCTGAATAAAGATAGTGCCGATAT 135 * * * ****** **************************** *********** consensus_5250#0 TAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATT 300 consensus_5250#1 TAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATT 195 ************************************************************ consensus_5250#0 CTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGAC 360 consensus_5250#1 CTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGAC 255 ************************************************************ consensus_5250#0 GCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACAT 420 consensus_5250#1 GCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACCT 315 ********************************************************** * consensus_5250#0 CACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAA 480 consensus_5250#1 CACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAA 375 ************************************************************ consensus_5250#0 CACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGG 540 consensus_5250#1 CACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGG 435 ************************************************************ consensus_5250#0 ATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTT 600 consensus_5250#1 ATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTT 495 ************************************************************ consensus_5250#0 CCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATT 660 consensus_5250#1 CCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATT 555 ************************************************************ consensus_5250#0 CTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACAC 720 consensus_5250#1 CTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACAC 615 ************************************************************ consensus_5250#0 GTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGG 780 consensus_5250#1 GTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGG 675 ************************************************************ consensus_5250#0 TTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGA 840 consensus_5250#1 TTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGA 735 ************************************************************ consensus_5250#0 AGGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTT 900 consensus_5250#1 ANGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTT 795 * ********************************************************** consensus_5250#0 TCGGTGATGATGTTGATGAACTGAACTTCAGAGTTAAAGGGGCAAACCAACGGGGACGCC 960 consensus_5250#1 T----------------------------------------------------------- 796 * consensus_5250#0 GGTTATTGGGCAAATGATGCCATCAGGTTGTCGAACCACAGCAACTCTGTTTCTAGCAGT 1020 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 TTTCTCCATCCCATGGGATTCAGGACTTGTGAGTGCGATTAGCAGATGCGCCTACTTCAT 1080 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 CTGGATATTCTGTCGTGTCTGAATTCTGAGCAAATATTCAGATTCCCGTGTTGTGTTGTT 1140 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 GTATGAGAAATCGTCATATACACTTGTTGTATGATAAGTTGATAGCTTCAATTACTTGGT 1200 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 GTAGGACATAACCACCATTCCCCTTTTCTCTTAGAATCTTGATGTAATCTGTACTCCTAA 1260 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 ATATGCCAGAACGAGATGAGAAGAGAATTGAATCAAGCGATAGAA 1305 consensus_5250#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||